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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 190 |
| AccI | GTMKAC | 1 cut(s) | 284 |
| AciI | CCGC | 3 cut(s) | 27, 32, 427 |
| AcsI | RAATTY | 1 cut(s) | 52 |
| AgsI | TTSAA | 2 cut(s) | 97, 273 |
| AjiI | CACGTC | 1 cut(s) | 282 |
| AjnI | CCWGG | 3 cut(s) | 212, 229, 444 |
| AluBI | AGCT | 5 cut(s) | 122, 140, 158, 305, 404 |
| AluI | AGCT | 5 cut(s) | 122, 140, 158, 305, 404 |
| Alw26I | GTCTC | 2 cut(s) | 101, 394 |
| AoxI | GGCC | 1 cut(s) | 428 |
| ApeKI | GCWGC | 2 cut(s) | 155, 302 |
| ApoI | RAATTY | 1 cut(s) | 52 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 266, 298, 331, 363 |
| AspLEI | GCGC | 1 cut(s) | 385 |
| AsuII | TTCGAA | 1 cut(s) | 399 |
| BanI | GGYRCC | 1 cut(s) | 190 |
| BbvI | GCAGC | 2 cut(s) | 167, 314 |
| BccI | CCATC | 2 cut(s) | 319, 410 |
| BceAI | ACGGC | 1 cut(s) | 168 |
| BciT130I | CCWGG | 3 cut(s) | 214, 231, 446 |
| BcoDI | GTCTC | 2 cut(s) | 101, 394 |
| BfoI | RGCGCY | 1 cut(s) | 386 |
| BisI | GCNGC | 3 cut(s) | 156, 303, 428 |
| BlsI | GCNGC | 3 cut(s) | 157, 304, 429 |
| Bme1390I | CCNGG | 3 cut(s) | 214, 231, 446 |
| BmgBI | CACGTC | 1 cut(s) | 282 |
| BmiI | GGNNCC | 2 cut(s) | 192, 249 |
| BmrFI | CCNGG | 3 cut(s) | 214, 231, 446 |
| BmrI | ACTGGG | 1 cut(s) | 362 |
| BmuI | ACTGGG | 1 cut(s) | 362 |
| BpmI | CTGGAG | 4 cut(s) | 126, 144, 248, 273 |
| Bpu14I | TTCGAA | 1 cut(s) | 399 |
| BpuEI | CTTGAG | 1 cut(s) | 116 |
| Bsa29I | ATCGAT | 1 cut(s) | 314 |
| BsaAI | YACGTR | 1 cut(s) | 240 |
| BsaBI | GATNNNNATC | 1 cut(s) | 333 |
| BsaJI | CCNNGG | 1 cut(s) | 213 |
| BsaWI | WCCGGW | 1 cut(s) | 250 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 106, 136, 142, 172, 271, 301 |
| Bse1I | ACTGG | 4 cut(s) | 143, 161, 290, 357 |
| Bse8I | GATNNNNATC | 1 cut(s) | 333 |
| BseBI | CCWGG | 3 cut(s) | 214, 231, 446 |
| BseCI | ATCGAT | 1 cut(s) | 314 |
| BseDI | CCNNGG | 1 cut(s) | 213 |
| BseGI | GGATG | 1 cut(s) | 421 |
| BseJI | GATNNNNATC | 1 cut(s) | 333 |
| BseMII | CTCAG | 1 cut(s) | 357 |
| BseNI | ACTGG | 4 cut(s) | 143, 161, 290, 357 |
| BseRI | GAGGAG | 1 cut(s) | 297 |
| BseXI | GCAGC | 2 cut(s) | 167, 314 |
| BsgI | GTGCAG | 1 cut(s) | 180 |
| BshFI | GGCC | 1 cut(s) | 430 |
| BshNI | GGYRCC | 1 cut(s) | 190 |
| BshVI | ATCGAT | 1 cut(s) | 314 |
| BsiSI | CCGG | 1 cut(s) | 251 |
| BslFI | GGGAC | 2 cut(s) | 209, 230 |
| BsmAI | GTCTC | 2 cut(s) | 101, 394 |
| BsmFI | GGGAC | 2 cut(s) | 209, 230 |
| BsnI | GGCC | 1 cut(s) | 430 |
| Bsp119I | TTCGAA | 1 cut(s) | 399 |
| BspACI | CCGC | 3 cut(s) | 27, 32, 427 |
| BspANI | GGCC | 1 cut(s) | 430 |
| BspCNI | CTCAG | 1 cut(s) | 358 |
| BspDI | ATCGAT | 1 cut(s) | 314 |
| BspLI | GGNNCC | 2 cut(s) | 192, 249 |
| BspT104I | TTCGAA | 1 cut(s) | 399 |
| BspT107I | GGYRCC | 1 cut(s) | 190 |
| BsrI | ACTGG | 4 cut(s) | 143, 161, 290, 357 |
| BssECI | CCNNGG | 1 cut(s) | 213 |
| Bst2UI | CCWGG | 3 cut(s) | 214, 231, 446 |
| Bst4CI | ACNGT | 1 cut(s) | 190 |
| BstBAI | YACGTR | 1 cut(s) | 240 |
| BstBI | TTCGAA | 1 cut(s) | 399 |
| BstC8I | GCNNGC | 1 cut(s) | 195 |
| BstDEI | CTNAG | 1 cut(s) | 366 |
| BstF5I | GGATG | 1 cut(s) | 421 |
| BstH2I | RGCGCY | 1 cut(s) | 386 |
| BstHHI | GCGC | 1 cut(s) | 385 |
| BstMAI | GTCTC | 2 cut(s) | 101, 394 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 199 |
| BstNI | CCWGG | 3 cut(s) | 214, 231, 446 |
| BstSCI | CCNGG | 3 cut(s) | 212, 229, 444 |
| BstV1I | GCAGC | 2 cut(s) | 167, 314 |
| Bsu15I | ATCGAT | 1 cut(s) | 314 |
| BsuRI | GGCC | 1 cut(s) | 430 |
| BsuTUI | ATCGAT | 1 cut(s) | 314 |
| BtrI | CACGTC | 1 cut(s) | 282 |
| BtsCI | GGATG | 1 cut(s) | 421 |
| BtsIMutI | CAGTG | 1 cut(s) | 297 |
| Cac8I | GCNNGC | 1 cut(s) | 195 |
| CfoI | GCGC | 1 cut(s) | 385 |
| ClaI | ATCGAT | 1 cut(s) | 314 |
| CsiI | ACCWGGT | 1 cut(s) | 229 |
| CviJI | RGCY | 8 cut(s) | 13, 122, 140, 158, 185, 305, 404, 430 |
| CviKI_1 | RGCY | 8 cut(s) | 13, 122, 140, 158, 185, 305, 404, 430 |
| DdeI | CTNAG | 1 cut(s) | 366 |
| EcoRII | CCWGG | 3 cut(s) | 212, 229, 444 |
| FaiI | YATR | 2 cut(s) | 77, 167 |
| FaqI | GGGAC | 2 cut(s) | 209, 230 |
| FblI | GTMKAC | 1 cut(s) | 284 |
| Fnu4HI | GCNGC | 3 cut(s) | 156, 303, 428 |
| FokI | GGATG | 1 cut(s) | 428 |
| Fsp4HI | GCNGC | 3 cut(s) | 156, 303, 428 |
| GlaI | GCGC | 1 cut(s) | 384 |
| GluI | GCNGC | 3 cut(s) | 156, 303, 428 |
| GsuI | CTGGAG | 4 cut(s) | 126, 144, 248, 273 |
| HaeII | RGCGCY | 1 cut(s) | 386 |
| HaeIII | GGCC | 1 cut(s) | 430 |
| HapII | CCGG | 1 cut(s) | 251 |
| HhaI | GCGC | 1 cut(s) | 385 |
| Hin6I | GCGC | 1 cut(s) | 383 |
| HinP1I | GCGC | 1 cut(s) | 383 |
| HincII | GTYRAC | 2 cut(s) | 285, 350 |
| HindII | GTYRAC | 2 cut(s) | 285, 350 |
| HinfI | GANTC | 3 cut(s) | 109, 209, 286 |
| HpaII | CCGG | 1 cut(s) | 251 |
| Hpy166II | GTNNAC | 3 cut(s) | 285, 350, 442 |
| Hpy188I | TCNGA | 2 cut(s) | 8, 208 |
| Hpy188III | TCNNGA | 2 cut(s) | 106, 265 |
| Hpy8I | GTNNAC | 3 cut(s) | 285, 350, 442 |
| Hpy99I | CGWCG | 1 cut(s) | 286 |
| HpyCH4III | ACNGT | 1 cut(s) | 190 |
| HpyCH4IV | ACGT | 3 cut(s) | 222, 239, 281 |
| HpyCH4V | TGCA | 1 cut(s) | 197 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 199 |
| HpyF3I | CTNAG | 1 cut(s) | 366 |
| HpySE526I | ACGT | 3 cut(s) | 222, 239, 281 |
| HspAI | GCGC | 1 cut(s) | 383 |
| LmnI | GCTCC | 4 cut(s) | 127, 145, 163, 310 |
| Lsp1109I | GCAGC | 2 cut(s) | 167, 314 |
| MabI | ACCWGGT | 1 cut(s) | 229 |
| MaeII | ACGT | 3 cut(s) | 222, 239, 281 |
| MaeIII | GTNAC | 1 cut(s) | 22 |
| MluCI | AATT | 2 cut(s) | 52, 126 |
| MlyI | GAGTC | 2 cut(s) | 103, 280 |
| MmeI | TCCRAC | 1 cut(s) | 225 |
| MnlI | CCTC | 7 cut(s) | 58, 72, 175, 318, 361, 370, 406 |
| MseI | TTAA | 1 cut(s) | 56 |
| MspA1I | CMGCKG | 1 cut(s) | 34 |
| MspI | CCGG | 1 cut(s) | 251 |
| MspR9I | CCNGG | 3 cut(s) | 214, 231, 446 |
| MvaI | CCWGG | 3 cut(s) | 214, 231, 446 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 199 |
| NlaIV | GGNNCC | 2 cut(s) | 192, 249 |
| NspV | TTCGAA | 1 cut(s) | 399 |
| PfeI | GAWTC | 1 cut(s) | 209 |
| PflFI | GACNNNGTC | 1 cut(s) | 221 |
| PkrI | GCNGC | 3 cut(s) | 157, 304, 429 |
| PleI | GAGTC | 2 cut(s) | 103, 280 |
| PpsI | GAGTC | 2 cut(s) | 103, 280 |
| Ppu21I | YACGTR | 1 cut(s) | 240 |
| Psp6I | CCWGG | 3 cut(s) | 212, 229, 444 |
| PspGI | CCWGG | 3 cut(s) | 212, 229, 444 |
| PspN4I | GGNNCC | 2 cut(s) | 192, 249 |
| PsyI | GACNNNGTC | 1 cut(s) | 221 |
| SalI | GTCGAC | 1 cut(s) | 283 |
| SaqAI | TTAA | 1 cut(s) | 56 |
| SatI | GCNGC | 3 cut(s) | 156, 303, 428 |
| SchI | GAGTC | 2 cut(s) | 103, 280 |
| ScrFI | CCNGG | 3 cut(s) | 214, 231, 446 |
| SexAI | ACCWGGT | 1 cut(s) | 229 |
| SfuI | TTCGAA | 1 cut(s) | 399 |
| SmlI | CTYRAG | 1 cut(s) | 131 |
| SmoI | CTYRAG | 1 cut(s) | 131 |
| Sse9I | AATT | 2 cut(s) | 52, 126 |
| SsiI | CCGC | 3 cut(s) | 27, 32, 427 |
| StyD4I | CCNGG | 3 cut(s) | 212, 229, 444 |
| TaaI | ACNGT | 1 cut(s) | 190 |
| TaiI | ACGT | 3 cut(s) | 225, 242, 284 |
| TaqI | TCGA | 4 cut(s) | 105, 284, 314, 399 |
| TasI | AATT | 2 cut(s) | 52, 126 |
| TauI | GCSGC | 1 cut(s) | 430 |
| TfiI | GAWTC | 1 cut(s) | 209 |
| Tru1I | TTAA | 1 cut(s) | 56 |
| Tru9I | TTAA | 1 cut(s) | 56 |
| TscAI | CASTG | 1 cut(s) | 297 |
| TseI | GCWGC | 2 cut(s) | 155, 302 |
| TspDTI | ATGAA | 1 cut(s) | 273 |
| TspRI | CASTG | 1 cut(s) | 297 |
| Tth111I | GACNNNGTC | 1 cut(s) | 221 |
| XapI | RAATTY | 1 cut(s) | 52 |
| XmiI | GTMKAC | 1 cut(s) | 284 |