Rh5BG323500

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000044
Physical Location & Seq
Reverse (-)
43532539 .. 43535167
2629 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG323500.1

Sequence Viewer

Length: 1221 bp
ATGTCTACTTCCCCTTCCCGGCAGGCCTCCGCCGTCGCTGCCGGTGAAGAGCCTCCTCTCACCAACACTAAACTTAAACCTACTTTTGCTTCTTTGCTTTCTTCTGATGTCCCGCTTGGGTTTGCAATTGATGACTTGCCTGTGCCATCTGTTGTTGATGGAGTCGTCACGATCCAAATCTCCGATGAGCCTTTCCAGCGCGGGCTCGATCGTTGCAAGACTATCCTTGTCGGGAAATTGCTCTCACCCCCGAATGGGGTCATGCCCAAGGCCAATGAACTGGCTCAAAGGTTGCGTTCGTTCTGGCCTAAACTCTCCAATTGGGTTGCTCATACACATGGGGACGCAGTTACTGCCAGAATTGAATATGAGTCGCTGCCAGTTCTCTGTCAAGTTTGTGGCGTTGTTGGCCACTCTGCAAACAAAAGCAGAAGCAAGTCGGAAGCAGTGATGCGCGGAGGACCCTCTGAACGCATTGTTGATGGTGCTACTGCGAGTGCTGAACGAGTTGCCACTAGTGCTGCTGAACGCGGCCGCTCCACGACTCGAGGTCGGCGTCGAACCCACCGTCGTTCAAAGAAGGCTAGTACACCCCCGCCCCGTGTACCTGCGGCCCAGACACCATTAACTGCAGCAATCCATATGCCAAGCTGCAGCCAACTTGATCAAGGGCTAAGCATATCCCCAGTACGGGCCACGGGTGGTGTTGCTCAAGCGGTTGATCATACCGCTTCACATGACAATGCAGCTCAAACTCATGCAGTGCAGGAAGCTGTTGTTGTCGCTCAGGATTGTCTACTTCAAATTGTGGACCCTGCTATTTTGGCTTGCAGTGATGTTGGAGTGACGAGCTCCTCCACTGCTTCTGCTCCTCCGGGTTTCTCACATGTTCATAATCAAGTGATGCTTTTGAGGTCACATCAAATGTCTGAGATCTCAGTTATGGGTCCTTCTGAGGATAGATTTATACGGGAAGATGCTGCTCACTCACGGTTCCTTTCTGACCTTTCCATCCAAGCTACTTTCCTCAGAGACCAGTCTAGGATAAGATGGCTGAAAGATGGCGACAGGAATACTTCTTTTTTGCAGAATATGGTCAAGTTGTGGCGCATAAACAAGTCCATCTGTGCTTTGAATGTTAACCAAGTGACTATTACAGACATGCCCGCCATAGAAGCTCATGTGGTGCAACACTTTGAGAAGGCTTTCCAAATATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

406

Amino Acids

43.77

Weight (kDa)

9.02

Isoelectric Point (pI)

54.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000044)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07760 AT5G28823
fragaria_vesca FvH4_1g13572 FvH4_2g03281 FvH4_2g04691 FvH4_2g08332 FvH4_2g08333 FvH4_2g15313 FvH4_2g26101 FvH4_2g29541 FvH4_3g06911 FvH4_3g34351 FvH4_3g43733 FvH4_4g02432 FvH4_4g05601 FvH4_4g08213 FvH4_4g09961 FvH4_4g10131 FvH4_4g20001 FvH4_4g20002 FvH4_5g01051 FvH4_5g01401 FvH4_5g27943 FvH4_6g09220 FvH4_6g17383 FvH4_6g35491 FvH4_6g46421 FvH4_7g04151 FvH4_7g13962 FvH4_7g18611 FvH4_7g19491 FvH4_7g19511 FvH4_7g26562
malus_domestica MD06G1221600.v1.1
pyrus_communis pycom10g21150
rosa_chinensis RchiOBHm_Chr1g0337571 RchiOBHm_Chr2g0168771 RchiOBHm_Chr3g0453631 RchiOBHm_Chr6g0278581
rosa_laevigata RLG00000001899 RLG00000001925 RLG00000002026 RLG00000003410 RLG00000003767 RLG00000004304 RLG00000004473 RLG00000004677 RLG00000006856 RLG00000007994 RLG00000009888 RLG00000011627 RLG00000012174 RLG00000012217 RLG00000013118 RLG00000013736 RLG00000014194 RLG00000014251 RLG00000015011 RLG00000015057 RLG00000015235 RLG00000017416 RLG00000018052 RLG00000018537 RLG00000019968 RLG00000020096 RLG00000020263 RLG00000022606 RLG00000023119 RLG00000028111 RLG00000029686 RLG00000030126 RLG00000031124 RLG00000031236 RLG00000032766 RLG00000033171 RLG00000033548 RLG00000033987 RLG00000034062 RLG00000035115 RLG00000035863
rosa_multiflora Rmu_co8036712.1_g000001 Rmu_co8080248.1_g000001 Rmu_co8208334.1_g000001 Rmu_co8253451.1_g000001 Rmu_co8393241.1_g000001 Rmu_co8522225.1_g000005 Rmu_sc0000060.1_g000030 Rmu_sc0000060.1_g000031 Rmu_sc0000060.1_g000032 Rmu_sc0000090.1_g000008 Rmu_sc0000149.1_g000051 Rmu_sc0000149.1_g000058 Rmu_sc0000309.1_g000050 Rmu_sc0000370.1_g000022 Rmu_sc0000370.1_g000023 Rmu_sc0000370.1_g000024 Rmu_sc0000418.1_g000018 Rmu_sc0000427.1_g000014 Rmu_sc0000427.1_g000015 Rmu_sc0000434.1_g000008 Rmu_sc0000487.1_g000038 Rmu_sc0000487.1_g000039 Rmu_sc0000569.1_g000029 Rmu_sc0000580.1_g000097 Rmu_sc0000595.1_g000068 Rmu_sc0000607.1_g000027 Rmu_sc0000738.1_g000004 Rmu_sc0000758.1_g000001 Rmu_sc0000758.1_g000002 Rmu_sc0000870.1_g000019 Rmu_sc0000924.1_g000040 Rmu_sc0000924.1_g000041 Rmu_sc0000999.1_g000037 Rmu_sc0001001.1_g000001 Rmu_sc0001010.1_g000080 Rmu_sc0001075.1_g000041 Rmu_sc0001097.1_g000016 Rmu_sc0001173.1_g000020 Rmu_sc0001258.1_g000010 Rmu_sc0001425.1_g000031 Rmu_sc0001493.1_g000020 Rmu_sc0001493.1_g000021 Rmu_sc0001644.1_g000024 Rmu_sc0001648.1_g000039 Rmu_sc0001662.1_g000002 Rmu_sc0001849.1_g000046 Rmu_sc0001851.1_g000038 Rmu_sc0001861.1_g000006 Rmu_sc0001899.1_g000008 Rmu_sc0002231.1_g000023 Rmu_sc0002393.1_g000012 Rmu_sc0002515.1_g000010 Rmu_sc0002551.1_g000013 Rmu_sc0002680.1_g000029 Rmu_sc0002700.1_g000030 Rmu_sc0002700.1_g000031 Rmu_sc0002709.1_g000035 Rmu_sc0002779.1_g000017 Rmu_sc0003267.1_g000040 Rmu_sc0003306.1_g000009 Rmu_sc0003338.1_g000014 Rmu_sc0003522.1_g000038 Rmu_sc0003522.1_g000039 Rmu_sc0003653.1_g000031 Rmu_sc0003901.1_g000003 Rmu_sc0003920.1_g000009 Rmu_sc0004014.1_g000009 Rmu_sc0004016.1_g000013 Rmu_sc0004031.1_g000002 Rmu_sc0004106.1_g000001 Rmu_sc0004432.1_g000004 Rmu_sc0004481.1_g000020 Rmu_sc0004874.1_g000005 Rmu_sc0004928.1_g000005 Rmu_sc0005065.1_g000053 Rmu_sc0005091.1_g000005 Rmu_sc0005217.1_g000015 Rmu_sc0005242.1_g000002 Rmu_sc0005300.1_g000011 Rmu_sc0005400.1_g000004 Rmu_sc0005486.1_g000007 Rmu_sc0005527.1_g000015 Rmu_sc0006059.1_g000021 Rmu_sc0006087.1_g000004 Rmu_sc0006184.1_g000006 Rmu_sc0006184.1_g000007 Rmu_sc0006578.1_g000006 Rmu_sc0006730.1_g000010 Rmu_sc0006736.1_g000030 Rmu_sc0006736.1_g000033 Rmu_sc0007333.1_g000018 Rmu_sc0007856.1_g000010 Rmu_sc0008231.1_g000003 Rmu_sc0009862.1_g000012 Rmu_sc0010547.1_g000001 Rmu_sc0010547.1_g000003 Rmu_sc0010632.1_g000012 Rmu_sc0010747.1_g000008 Rmu_sc0011075.1_g000009 Rmu_sc0011565.1_g000004 Rmu_sc0011641.1_g000003 Rmu_sc0013102.1_g000013 Rmu_sc0013160.1_g000006 Rmu_sc0014846.1_g000004 Rmu_sc0017037.1_g000003 Rmu_sc0018203.1_g000001 Rmu_sc0018204.1_g000001 Rmu_sc0018348.1_g000001 Rmu_sc0019354.1_g000002 Rmu_sc0021630.1_g000002 Rmu_sc0022987.1_g000002 Rmu_sc0024469.1_g000005 Rmu_sc0033519.1_g000001 Rmu_sc0033519.1_g000002 Rmu_sc0033519.1_g000003 Rmu_sc0042775.1_g000001 Rmu_ssc0000110.1_g000003 Rmu_ssc0000110.1_g000004 Rmu_ssc0000126.1_g000068 Rmu_ssc0000200.1_g000007 Rmu_ssc0000295.1_g000003 Rmu_ssc0000295.1_g000004 Rmu_ssc0000299.1_g000010 Rmu_ssc0000308.1_g000024 Rmu_ssc0000339.1_g000006 Rmu_ssc0000385.1_g000012 Rmu_ssc0000409.1_g000004 Rmu_ssc0000421.1_g000004
rosa_roxburghii Rroxscaffold_156G00440360 Rroxscaffold_166G00440800 Rroxscaffold_1G00039040 Rroxscaffold_1G00039050 Rroxscaffold_1G00073950 Rroxscaffold_2G00091710 Rroxscaffold_2G00120050 Rroxscaffold_2G00122590 Rroxscaffold_3G00219700 Rroxscaffold_3G00264140 Rroxscaffold_4G00290600 Rroxscaffold_4G00323610 Rroxscaffold_4G00328460 Rroxscaffold_5G00343440 Rroxscaffold_5G00343570 Rroxscaffold_5G00378540 Rroxscaffold_5G00385090 Rroxscaffold_7G00169130 Rroxscaffold_7G00216420
rosa_rugosa Rorug01G0065800 Rorug01G0073500 Rorug01G0091700 Rorug01G0096500 Rorug01G0204700.1 Rorug01G0249100 Rorug01G0333800 Rorug01G0333900 Rorug01G0339500 Rorug01G0431300 Rorug02G0085400 Rorug02G0117500 Rorug02G0130900 Rorug02G0178800 Rorug02G0226700 Rorug02G0336300 Rorug02G0338700 Rorug02G0351400 Rorug02G0459900 Rorug03G0187000 Rorug03G0223700 Rorug03G0291300 Rorug03G0291300 Rorug03G0311100 Rorug03G0316900 Rorug03G0346000 Rorug04G0014500 Rorug04G0014600 Rorug04G0124100 Rorug04G0136500 Rorug04G0302000 Rorug04G0338100 Rorug04G0338200 Rorug04G0413100 Rorug05G0182200 Rorug05G0226500 Rorug05G0273300 Rorug05G0292200 Rorug05G0292200 Rorug05G0392500 Rorug05G0394500 Rorug05G0394600 Rorug05G0505600.1 Rorug06G0351400 Rorug06G0393400 Rorug06G0393600 Rorug06G0470000 Rorug07G0063100 Rorug07G0086800 Rorug07G0109200 Rorug07G0236100
rosa_samantha Rh1AG010800 Rh1AG011100 Rh1AG064900 Rh1AG088000 Rh1AG207100 Rh1AG262000 Rh1AG300800 Rh1BG043000 Rh1BG144600 Rh1BG180700 Rh1BG180800 Rh1BG328800 Rh1BG399400 Rh1CG041400 Rh1CG047300 Rh1CG379700 Rh1DG036500 Rh1DG083000 Rh1DG210700 Rh1DG210800 Rh1DG231100 Rh2AG007900 Rh2AG055500 Rh2AG339100 Rh2AG368100 Rh2BG243300 Rh2BG258900 Rh2BG292000 Rh2BG333500 Rh2BG387300 Rh2BG612800 Rh2BG619100 Rh2CG026500 Rh2CG163600 Rh2CG535700 Rh2DG186400 Rh2DG235000 Rh2DG314500 Rh2DG388500 Rh2DG391400 Rh2DG496900 Rh2DG526700 Rh2DG570700 Rh3AG330700 Rh3BG266900 Rh3CG236000 Rh3CG340400 Rh3DG090000 Rh3DG278400 Rh3DG297600 Rh3DG362600 Rh4AG001300 Rh4AG023300 Rh4AG097100 Rh4AG427000 Rh4BG029400 Rh4BG032400 Rh4BG086000 Rh4BG249200 Rh4CG001900 Rh4CG040600 Rh4CG093000 Rh4CG106300 Rh4CG113200 Rh4CG113900 Rh4DG002300 Rh4DG144400 Rh4DG234200 Rh5AG043700 Rh5AG084900 Rh5AG161500 Rh5AG409000 Rh5AG457200 Rh5AG457900 Rh5AG473700 Rh5AG520600 Rh5BG042100 Rh5BG124100 Rh5BG323500 Rh5BG417200 Rh5BG443700 Rh5BG451500 Rh5BG464900 Rh5BG470400 Rh5BG522500 Rh5CG068800 Rh5CG178300 Rh5CG231000 Rh5CG258600 Rh5CG394500 Rh5CG473700 Rh5DG164700 Rh5DG235400 Rh5DG261300 Rh5DG304900 Rh5DG334500 Rh5DG424300 Rh5DG458400 Rh5DG478600 Rh5DG552300 Rh5DG552700 Rh6AG037000 Rh6AG042100 Rh6AG255500 Rh6AG283400 Rh6AG291800 Rh6BG049600 Rh6BG080700 Rh6BG114600 Rh6BG128900 Rh6BG352500 Rh6CG052400 Rh6CG112900 Rh6CG113000 Rh6CG131300 Rh6CG157700 Rh6CG243200 Rh6CG254100 Rh6CG275700 Rh6CG299700 Rh6CG309100 Rh6CG317600 Rh6CG342600 Rh6CG471900 Rh6DG038200 Rh6DG102300 Rh6DG114400 Rh6DG225900 Rh6DG292900 Rh6DG320700 Rh6DG512800 Rh7AG217700 Rh7AG313900 Rh7AG446000 Rh7AG472600 Rh7BG223100 Rh7BG349900 Rh7BG352000 Rh7CG160200 Rh7CG233900 Rh7CG242700 Rh7CG273900 Rh7CG306400 Rh7CG322200 Rh7DG053800 Rh7DG077800 Rh7DG227700 Rh7DG404800
rosa_wichuraiana Rw0G003990 Rw2G022110 Rw2G024890 Rw6G005700 Rw7G008770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 616
AccBSI CCGCTC 1 cut(s) 537
AccI GTMKAC 2 cut(s) 5, 796
AccII CGCG 3 cut(s) 201, 456, 531
AclWI GGATC 1 cut(s) 166
AcoI YGGCCR 2 cut(s) 409, 532
AcyI GRCGYC 1 cut(s) 556
AfaI GTAC 3 cut(s) 589, 606, 690
AfiI CCNNNNNNNGG 6 cut(s) 18, 254, 255, 256, 690, 691
AflIII ACRYGT 1 cut(s) 886
AgsI TTSAA 4 cut(s) 365, 576, 803, 1135
AhdI GACNNNNNGTC 1 cut(s) 549
AhlI ACTAGT 1 cut(s) 515
AluBI AGCT 6 cut(s) 651, 749, 773, 852, 1019, 1178
AluI AGCT 6 cut(s) 651, 749, 773, 852, 1019, 1178
Alw21I GWGCWC 1 cut(s) 854
Alw26I GTCTC 1 cut(s) 1026
AlwI GGATC 1 cut(s) 166
AlwNI CAGNNNCTG 1 cut(s) 353
Ama87I CYCGRG 1 cut(s) 546
AoxI GGCC 7 cut(s) 24, 270, 305, 409, 532, 612, 693
ApeKI GCWGC 8 cut(s) 38, 376, 521, 632, 651, 654, 746, 980
ArsI GACNNNNNNTTYG 2 cut(s) 553, 585
Asp700I GAANNNNTTC 1 cut(s) 1205
AspLEI GCGC 3 cut(s) 201, 456, 1110
AspS9I GGNCC 5 cut(s) 461, 613, 693, 811, 947
AsuC2I CCSGG 2 cut(s) 19, 876
AsuHPI GGTGA 3 cut(s) 52, 56, 237
AvaI CYCGRG 1 cut(s) 546
AvaII GGWCC 3 cut(s) 461, 811, 947
BalI TGGCCA 1 cut(s) 411
BanII GRGCYC 2 cut(s) 207, 854
Bbv12I GWGCWC 1 cut(s) 854
BbvI GCAGC 8 cut(s) 25, 363, 508, 638, 644, 666, 758, 967
BccI CCATC 7 cut(s) 152, 154, 476, 1019, 1044, 1055, 1130
BceAI ACGGC 1 cut(s) 17
BclI TGATCA 2 cut(s) 664, 721
BcnI CCSGG 2 cut(s) 19, 876
BcoDI GTCTC 1 cut(s) 1026
BcuI ACTAGT 1 cut(s) 515
BfaI CTAG 3 cut(s) 516, 585, 1041
BfmI CTRYAG 2 cut(s) 630, 652
BfuAI ACCTGC 1 cut(s) 616
BglII AGATCT 1 cut(s) 933
BlpI GCTNAGC 1 cut(s) 674
Bme1390I CCNGG 2 cut(s) 19, 876
Bme18I GGWCC 3 cut(s) 461, 811, 947
BmeRI GACNNNNNGTC 1 cut(s) 549
BmeT110I CYCGRG 1 cut(s) 546
BmgT120I GGNCC 5 cut(s) 461, 613, 693, 811, 947
BmiI GGNNCC 4 cut(s) 463, 813, 948, 995
BmrFI CCNGG 2 cut(s) 19, 876
BmrI ACTGGG 1 cut(s) 680
BmsI GCATC 3 cut(s) 441, 894, 967
BmuI ACTGGG 1 cut(s) 680
Bpu10I CCTNAGC 1 cut(s) 786
Bpu1102I GCTNAGC 1 cut(s) 674
BpuEI CTTGAG 1 cut(s) 696
BpuMI CCSGG 2 cut(s) 19, 876
BsaBI GATNNNNATC 1 cut(s) 176
BsaHI GRCGYC 1 cut(s) 556
BsaI GGTCTC 1 cut(s) 1026
BsaJI CCNNGG 2 cut(s) 267, 696
Bsc4I CCNNNNNNNGG 6 cut(s) 18, 254, 255, 256, 690, 691
Bse118I RCCGGY 1 cut(s) 41
Bse1I ACTGG 4 cut(s) 285, 380, 686, 1036
Bse8I GATNNNNATC 1 cut(s) 176
BseDI CCNNGG 2 cut(s) 267, 696
BseGI GGATG 1 cut(s) 1011
BseJI GATNNNNATC 1 cut(s) 176
BseLI CCNNNNNNNGG 6 cut(s) 18, 254, 255, 256, 690, 691
BseMII CTCAG 5 cut(s) 800, 921, 945, 951, 1042
BseNI ACTGG 4 cut(s) 285, 380, 686, 1036
BseRI GAGGAG 3 cut(s) 45, 844, 861
BseX3I CGGCCG 1 cut(s) 532
BseXI GCAGC 8 cut(s) 25, 363, 508, 638, 644, 666, 758, 967
BsgI GTGCAG 1 cut(s) 785
Bsh1236I CGCG 3 cut(s) 201, 456, 531
Bsh1285I CGRYCG 2 cut(s) 211, 535
BshFI GGCC 7 cut(s) 26, 272, 307, 411, 534, 614, 695
BsiEI CGRYCG 2 cut(s) 211, 535
BsiHKAI GWGCWC 1 cut(s) 854
BsiHKCI CYCGRG 1 cut(s) 546
BsiSI CCGG 3 cut(s) 19, 42, 875
BslFI GGGAC 2 cut(s) 95, 356
BslI CCNNNNNNNGG 6 cut(s) 18, 254, 255, 256, 690, 691
BsmAI GTCTC 1 cut(s) 1026
BsmFI GGGAC 2 cut(s) 95, 356
BsnI GGCC 7 cut(s) 26, 272, 307, 411, 534, 614, 695
Bso31I GGTCTC 1 cut(s) 1026
BsoBI CYCGRG 1 cut(s) 546
Bsp1286I GDGCHC 2 cut(s) 207, 854
Bsp143I GATC 5 cut(s) 171, 208, 664, 721, 933
Bsp1720I GCTNAGC 1 cut(s) 674
BspANI GGCC 7 cut(s) 26, 272, 307, 411, 534, 614, 695
BspCNI CTCAG 5 cut(s) 799, 922, 946, 950, 1041
BspFNI CGCG 3 cut(s) 201, 456, 531
BspLI GGNNCC 4 cut(s) 463, 813, 948, 995
BspMAI CTGCAG 2 cut(s) 634, 656
BspMI ACCTGC 1 cut(s) 616
BspPI GGATC 1 cut(s) 166
BspQI GCTCTTC 1 cut(s) 42
BspTNI GGTCTC 1 cut(s) 1026
BsrBI CCGCTC 1 cut(s) 537
BsrFI RCCGGY 1 cut(s) 41
BsrI ACTGG 4 cut(s) 285, 380, 686, 1036
BssAI RCCGGY 1 cut(s) 41
BssECI CCNNGG 2 cut(s) 267, 696
BssMI GATC 5 cut(s) 171, 208, 664, 721, 933
BssNI GRCGYC 1 cut(s) 556
BssT1I CCWWGG 1 cut(s) 267
Bst4CI ACNGT 2 cut(s) 569, 993
Bst6I CTCTTC 1 cut(s) 42
BstACI GRCGYC 1 cut(s) 556
BstAPI GCANNNNNTGC 1 cut(s) 353
BstC8I GCNNGC 4 cut(s) 24, 203, 829, 1167
BstDEI CTNAG 6 cut(s) 674, 786, 930, 937, 954, 1028
BstDSI CCRYGG 1 cut(s) 696
BstF5I GGATG 1 cut(s) 1011
BstFNI CGCG 3 cut(s) 201, 456, 531
BstHHI GCGC 3 cut(s) 201, 456, 1110
BstKTI GATC 5 cut(s) 174, 211, 667, 724, 936
BstMAI GTCTC 1 cut(s) 1026
BstMBI GATC 5 cut(s) 171, 208, 664, 721, 933
BstMCI CGRYCG 2 cut(s) 211, 535
BstMWI GCNNNNNNNGC 7 cut(s) 38, 196, 353, 408, 518, 824, 1175
BstNSI RCATGY 2 cut(s) 890, 1165
BstSCI CCNGG 2 cut(s) 17, 874
BstSFI CTRYAG 2 cut(s) 630, 652
BstUI CGCG 3 cut(s) 201, 456, 531
BstV1I GCAGC 8 cut(s) 25, 363, 508, 638, 644, 666, 758, 967
BstX2I RGATCY 1 cut(s) 933
BstXI CCANNNNNNTGG 1 cut(s) 280
BstYI RGATCY 1 cut(s) 933
BstZI CGGCCG 1 cut(s) 532
BsuRI GGCC 7 cut(s) 26, 272, 307, 411, 534, 614, 695
BtgI CCRYGG 1 cut(s) 696
BtsCI GGATG 1 cut(s) 1011
BtsI GCAGTG 4 cut(s) 453, 768, 838, 858
BtsIMutI CAGTG 4 cut(s) 453, 768, 838, 858
BveI ACCTGC 1 cut(s) 616
Cac8I GCNNGC 4 cut(s) 24, 203, 829, 1167
CaiI CAGNNNCTG 1 cut(s) 353
CciNI GCGGCCGC 1 cut(s) 532
CfoI GCGC 3 cut(s) 201, 456, 1110
Cfr10I RCCGGY 1 cut(s) 41
Cfr13I GGNCC 5 cut(s) 461, 613, 693, 811, 947
CseI GACGC 2 cut(s) 353, 545
Csp6I GTAC 3 cut(s) 588, 605, 689
CviAII CATG 7 cut(s) 262, 338, 737, 758, 887, 1162, 1181
CviQI GTAC 3 cut(s) 588, 605, 689
DdeI CTNAG 6 cut(s) 674, 786, 930, 937, 954, 1028
DpnI GATC 5 cut(s) 173, 210, 666, 723, 935
DpnII GATC 5 cut(s) 171, 208, 664, 721, 933
DriI GACNNNNNGTC 1 cut(s) 549
EaeI YGGCCR 2 cut(s) 409, 532
EagI CGGCCG 1 cut(s) 532
Eam1104I CTCTTC 1 cut(s) 42
Eam1105I GACNNNNNGTC 1 cut(s) 549
EarI CTCTTC 1 cut(s) 42
EciI GGCGGA 1 cut(s) 19
Ecl136II GAGCTC 1 cut(s) 852
EclXI CGGCCG 1 cut(s) 532
Eco130I CCWWGG 1 cut(s) 267
Eco147I AGGCCT 1 cut(s) 26
Eco24I GRGCYC 2 cut(s) 207, 854
Eco31I GGTCTC 1 cut(s) 1026
Eco47I GGWCC 3 cut(s) 461, 811, 947
Eco52I CGGCCG 1 cut(s) 532
Eco53kI GAGCTC 1 cut(s) 852
Eco88I CYCGRG 1 cut(s) 546
EcoICRI GAGCTC 1 cut(s) 852
EcoO109I RGGNCCY 2 cut(s) 461, 947
EcoT14I CCWWGG 1 cut(s) 267
EcoT38I GRGCYC 2 cut(s) 207, 854
ErhI CCWWGG 1 cut(s) 267
FaeI CATG 7 cut(s) 265, 341, 740, 761, 890, 1165, 1184
FalI AAGNNNNNCTT 2 cut(s) 891, 923
FaqI GGGAC 2 cut(s) 95, 356
FatI CATG 7 cut(s) 261, 337, 736, 757, 886, 1161, 1180
FauI CCCGC 4 cut(s) 120, 194, 603, 1174
FauNDI CATATG 1 cut(s) 642
FbaI TGATCA 2 cut(s) 664, 721
FblI GTMKAC 2 cut(s) 5, 796
FokI GGATG 1 cut(s) 998
FriOI GRGCYC 2 cut(s) 207, 854
FspBI CTAG 3 cut(s) 516, 585, 1041
GlaI GCGC 3 cut(s) 200, 455, 1109
HaeIII GGCC 7 cut(s) 26, 272, 307, 411, 534, 614, 695
HapII CCGG 3 cut(s) 19, 42, 875
HgaI GACGC 2 cut(s) 353, 545
HhaI GCGC 3 cut(s) 201, 456, 1110
Hin1I GRCGYC 1 cut(s) 556
Hin1II CATG 7 cut(s) 265, 341, 740, 761, 890, 1165, 1184
Hin6I GCGC 3 cut(s) 199, 454, 1108
HinP1I GCGC 3 cut(s) 199, 454, 1108
HincII GTYRAC 1 cut(s) 1141
HindII GTYRAC 1 cut(s) 1141
HinfI GANTC 3 cut(s) 162, 371, 544
HpaI GTTAAC 1 cut(s) 1141
HpaII CCGG 3 cut(s) 19, 42, 875
HphI GGTGA 3 cut(s) 52, 56, 237
Hpy166II GTNNAC 6 cut(s) 6, 590, 605, 797, 811, 1141
Hpy188I TCNGA 8 cut(s) 106, 184, 442, 469, 931, 955, 1003, 1031
Hpy188III TCNNGA 3 cut(s) 169, 232, 788
Hpy8I GTNNAC 6 cut(s) 6, 590, 605, 797, 811, 1141
Hpy99I CGWCG 3 cut(s) 38, 561, 573
HpyAV CCTTC 4 cut(s) 24, 574, 960, 1195
HpyCH4III ACNGT 2 cut(s) 569, 993
HpyF10VI GCNNNNNNNGC 7 cut(s) 38, 196, 353, 408, 518, 824, 1175
HpyF3I CTNAG 6 cut(s) 674, 786, 930, 937, 954, 1028
Hsp92I GRCGYC 1 cut(s) 556
Hsp92II CATG 7 cut(s) 265, 341, 740, 761, 890, 1165, 1184
HspAI GCGC 3 cut(s) 199, 454, 1108
Ksp22I TGATCA 2 cut(s) 664, 721
KspAI GTTAAC 1 cut(s) 1141
Kzo9I GATC 5 cut(s) 171, 208, 664, 721, 933
LguI GCTCTTC 1 cut(s) 42
LmnI GCTCC 3 cut(s) 542, 857, 874
Lsp1109I GCAGC 8 cut(s) 25, 363, 508, 638, 644, 666, 758, 967
LweI GCATC 3 cut(s) 441, 894, 967
MaeI CTAG 3 cut(s) 516, 585, 1041
MaeIII GTNAC 5 cut(s) 166, 349, 844, 915, 1147
MalI GATC 5 cut(s) 173, 210, 666, 723, 935
MbiI CCGCTC 1 cut(s) 537
MboI GATC 5 cut(s) 171, 208, 664, 721, 933
MboII GAAGA 3 cut(s) 59, 93, 986
MfeI CAATTG 2 cut(s) 126, 319
MflI RGATCY 1 cut(s) 933
MhlI GDGCHC 2 cut(s) 207, 854
MlsI TGGCCA 1 cut(s) 411
MluCI AATT 5 cut(s) 126, 236, 319, 360, 804
MluNI TGGCCA 1 cut(s) 411
MlyI GAGTC 3 cut(s) 171, 380, 538
MmeI TCCRAC 2 cut(s) 420, 820
Mox20I TGGCCA 1 cut(s) 411
MroXI GAANNNNTTC 1 cut(s) 1205
MscI TGGCCA 1 cut(s) 411
MseI TTAA 3 cut(s) 75, 626, 1140
MslI CAYNNNNRTG 2 cut(s) 336, 741
Msp20I TGGCCA 1 cut(s) 411
MspI CCGG 3 cut(s) 19, 42, 875
MspR9I CCNGG 2 cut(s) 19, 876
MunI CAATTG 2 cut(s) 126, 319
MvnI CGCG 3 cut(s) 201, 456, 531
MwoI GCNNNNNNNGC 7 cut(s) 38, 196, 353, 408, 518, 824, 1175
NciI CCSGG 2 cut(s) 19, 876
NdeI CATATG 1 cut(s) 642
NdeII GATC 5 cut(s) 171, 208, 664, 721, 933
NlaIII CATG 7 cut(s) 265, 341, 740, 761, 890, 1165, 1184
NlaIV GGNNCC 4 cut(s) 463, 813, 948, 995
NmuCI GTSAC 4 cut(s) 166, 844, 915, 1147
NotI GCGGCCGC 1 cut(s) 532
NspI RCATGY 2 cut(s) 890, 1165
PaeR7I CTCGAG 1 cut(s) 546
PceI AGGCCT 1 cut(s) 26
PciI ACATGT 1 cut(s) 886
PciSI GCTCTTC 1 cut(s) 42
PcsI WCGNNNNNNNCGW 2 cut(s) 553, 565
PdmI GAANNNNTTC 1 cut(s) 1205
Ple19I CGATCG 1 cut(s) 211
PleI GAGTC 3 cut(s) 170, 379, 538
PpsI GAGTC 3 cut(s) 170, 379, 538
PpuMI RGGWCCY 2 cut(s) 461, 947
PscI ACATGT 1 cut(s) 886
Psp124BI GAGCTC 1 cut(s) 854
Psp5II RGGWCCY 2 cut(s) 461, 947
PspN4I GGNNCC 4 cut(s) 463, 813, 948, 995
PspPI GGNCC 5 cut(s) 461, 613, 693, 811, 947
PspPPI RGGWCCY 2 cut(s) 461, 947
PspXI VCTCGAGB 1 cut(s) 546
PstI CTGCAG 2 cut(s) 634, 656
PstNI CAGNNNCTG 1 cut(s) 353
PsuI RGATCY 1 cut(s) 933
PvuI CGATCG 1 cut(s) 211
RsaI GTAC 3 cut(s) 589, 606, 690
RsaNI GTAC 3 cut(s) 588, 605, 689
RseI CAYNNNNRTG 2 cut(s) 336, 741
SacI GAGCTC 1 cut(s) 854
SapI GCTCTTC 1 cut(s) 42
SaqAI TTAA 3 cut(s) 75, 626, 1140
Sau3AI GATC 5 cut(s) 171, 208, 664, 721, 933
Sau96I GGNCC 5 cut(s) 461, 613, 693, 811, 947
SchI GAGTC 3 cut(s) 171, 380, 538
ScrFI CCNGG 2 cut(s) 19, 876
SduI GDGCHC 2 cut(s) 207, 854
SfaNI GCATC 3 cut(s) 441, 894, 967
SfcI CTRYAG 2 cut(s) 630, 652
Sfr274I CTCGAG 1 cut(s) 546
SinI GGWCC 3 cut(s) 461, 811, 947
SlaI CTCGAG 1 cut(s) 546
SmiMI CAYNNNNRTG 2 cut(s) 336, 741
SmlI CTYRAG 2 cut(s) 546, 711
SmoI CTYRAG 2 cut(s) 546, 711
SpeI ACTAGT 1 cut(s) 515
Sse9I AATT 5 cut(s) 126, 236, 319, 360, 804
SseBI AGGCCT 1 cut(s) 26
SspI AATATT 1 cut(s) 1215
SspMI CTAG 3 cut(s) 516, 585, 1041
SstI GAGCTC 1 cut(s) 854
StuI AGGCCT 1 cut(s) 26
StyD4I CCNGG 2 cut(s) 17, 874
StyI CCWWGG 1 cut(s) 267
TaaI ACNGT 2 cut(s) 569, 993
TaqI TCGA 3 cut(s) 207, 547, 559
TasI AATT 5 cut(s) 126, 236, 319, 360, 804
TatI WGTACW 1 cut(s) 587
TauI GCSGC 3 cut(s) 534, 537, 614
Tru1I TTAA 3 cut(s) 75, 626, 1140
Tru9I TTAA 3 cut(s) 75, 626, 1140
TscAI CASTG 4 cut(s) 453, 768, 838, 865
TseFI GTSAC 4 cut(s) 166, 844, 915, 1147
TseI GCWGC 8 cut(s) 38, 376, 521, 632, 651, 654, 746, 980
Tsp45I GTSAC 4 cut(s) 166, 844, 915, 1147
TspDTI ATGAA 2 cut(s) 291, 881
TspRI CASTG 4 cut(s) 453, 768, 838, 865
VpaK11BI GGWCC 3 cut(s) 461, 811, 947
XceI RCATGY 2 cut(s) 890, 1165
XhoI CTCGAG 1 cut(s) 546
XmiI GTMKAC 2 cut(s) 5, 796
XmnI GAANNNNTTC 1 cut(s) 1205
XspI CTAG 3 cut(s) 516, 585, 1041
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.