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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 349 |
| AccBSI | CCGCTC | 1 cut(s) | 60 |
| AccII | CGCG | 3 cut(s) | 6, 54, 65 |
| AcoI | YGGCCR | 1 cut(s) | 55 |
| AcsI | RAATTY | 2 cut(s) | 494, 631 |
| AfaI | GTAC | 4 cut(s) | 216, 600, 617, 644 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 194, 216, 217, 538, 595 |
| AgsI | TTSAA | 1 cut(s) | 99 |
| AhlI | ACTAGT | 1 cut(s) | 38 |
| AjnI | CCWGG | 1 cut(s) | 400 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 621, 653 |
| AluBI | AGCT | 4 cut(s) | 177, 275, 299, 378 |
| AluI | AGCT | 4 cut(s) | 177, 275, 299, 378 |
| Alw21I | GWGCWC | 1 cut(s) | 115 |
| Alw44I | GTGCAC | 1 cut(s) | 111 |
| Ama87I | CYCGRG | 1 cut(s) | 69 |
| AoxI | GGCC | 3 cut(s) | 55, 73, 219 |
| ApaLI | GTGCAC | 1 cut(s) | 111 |
| ApeKI | GCWGC | 3 cut(s) | 158, 177, 272 |
| ApoI | RAATTY | 2 cut(s) | 494, 631 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 76, 108 |
| AspLEI | GCGC | 1 cut(s) | 6 |
| AspS9I | GGNCC | 1 cut(s) | 219 |
| AsuHPI | GGTGA | 5 cut(s) | 59, 371, 442, 481, 488 |
| AsuNHI | GCTAGC | 1 cut(s) | 353 |
| AvaI | CYCGRG | 1 cut(s) | 69 |
| BaeGI | GKGCMC | 1 cut(s) | 115 |
| BanII | GRGCYC | 1 cut(s) | 24 |
| Bbv12I | GWGCWC | 1 cut(s) | 115 |
| BbvI | GCAGC | 3 cut(s) | 164, 170, 284 |
| BccI | CCATC | 2 cut(s) | 163, 733 |
| BceAI | ACGGC | 2 cut(s) | 63, 75 |
| BciT130I | CCWGG | 1 cut(s) | 402 |
| BclI | TGATCA | 2 cut(s) | 190, 247 |
| BcuI | ACTAGT | 1 cut(s) | 38 |
| BfaI | CTAG | 3 cut(s) | 39, 108, 354 |
| BfmI | CTRYAG | 1 cut(s) | 156 |
| BfuAI | ACCTGC | 1 cut(s) | 349 |
| BisI | GCNGC | 7 cut(s) | 55, 58, 76, 159, 178, 243, 273 |
| BlsI | GCNGC | 7 cut(s) | 56, 59, 77, 160, 179, 244, 274 |
| Bme1390I | CCNGG | 1 cut(s) | 402 |
| BmeT110I | CYCGRG | 1 cut(s) | 69 |
| BmgT120I | GGNCC | 1 cut(s) | 219 |
| BmiI | GGNNCC | 1 cut(s) | 339 |
| BmrFI | CCNGG | 1 cut(s) | 402 |
| BmrI | ACTGGG | 1 cut(s) | 206 |
| BmsI | GCATC | 3 cut(s) | 118, 266, 430 |
| BmtI | GCTAGC | 1 cut(s) | 357 |
| BmuI | ACTGGG | 1 cut(s) | 206 |
| BpmI | CTGGAG | 1 cut(s) | 486 |
| BpuEI | CTTGAG | 2 cut(s) | 222, 297 |
| BsaJI | CCNNGG | 1 cut(s) | 222 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 194, 216, 217, 538, 595 |
| Bse1I | ACTGG | 3 cut(s) | 212, 503, 705 |
| BseBI | CCWGG | 1 cut(s) | 402 |
| BseDI | CCNNGG | 1 cut(s) | 222 |
| BseGI | GGATG | 1 cut(s) | 744 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 194, 216, 217, 538, 595 |
| BseMII | CTCAG | 1 cut(s) | 9 |
| BseNI | ACTGG | 3 cut(s) | 212, 503, 705 |
| BseRI | GAGGAG | 1 cut(s) | 370 |
| BseSI | GKGCMC | 1 cut(s) | 115 |
| BseX3I | CGGCCG | 1 cut(s) | 55 |
| BseXI | GCAGC | 3 cut(s) | 164, 170, 284 |
| BsgI | GTGCAG | 1 cut(s) | 311 |
| Bsh1236I | CGCG | 3 cut(s) | 6, 54, 65 |
| Bsh1285I | CGRYCG | 1 cut(s) | 58 |
| BshFI | GGCC | 3 cut(s) | 57, 75, 221 |
| BsiEI | CGRYCG | 1 cut(s) | 58 |
| BsiHKAI | GWGCWC | 1 cut(s) | 115 |
| BsiHKCI | CYCGRG | 1 cut(s) | 69 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 194, 216, 217, 538, 595 |
| BsnI | GGCC | 3 cut(s) | 57, 75, 221 |
| BsoBI | CYCGRG | 1 cut(s) | 69 |
| Bsp1286I | GDGCHC | 2 cut(s) | 24, 115 |
| Bsp143I | GATC | 2 cut(s) | 190, 247 |
| BspANI | GGCC | 3 cut(s) | 57, 75, 221 |
| BspCNI | CTCAG | 1 cut(s) | 10 |
| BspFNI | CGCG | 3 cut(s) | 6, 54, 65 |
| BspLI | GGNNCC | 1 cut(s) | 339 |
| BspMAI | CTGCAG | 1 cut(s) | 160 |
| BspMI | ACCTGC | 1 cut(s) | 349 |
| BspOI | GCTAGC | 1 cut(s) | 357 |
| BsrBI | CCGCTC | 1 cut(s) | 60 |
| BsrI | ACTGG | 3 cut(s) | 212, 503, 705 |
| BssECI | CCNNGG | 1 cut(s) | 222 |
| BssMI | GATC | 2 cut(s) | 190, 247 |
| Bst2UI | CCWGG | 1 cut(s) | 402 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 137 |
| BstC8I | GCNNGC | 2 cut(s) | 355, 586 |
| BstDEI | CTNAG | 2 cut(s) | 18, 481 |
| BstDSI | CCRYGG | 1 cut(s) | 222 |
| BstF5I | GGATG | 1 cut(s) | 744 |
| BstFNI | CGCG | 3 cut(s) | 6, 54, 65 |
| BstHHI | GCGC | 1 cut(s) | 6 |
| BstKTI | GATC | 2 cut(s) | 193, 250 |
| BstMBI | GATC | 2 cut(s) | 190, 247 |
| BstMCI | CGRYCG | 1 cut(s) | 58 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 137, 242, 305, 350 |
| BstNI | CCWGG | 1 cut(s) | 402 |
| BstSCI | CCNGG | 1 cut(s) | 400 |
| BstSFI | CTRYAG | 1 cut(s) | 156 |
| BstSLI | GKGCMC | 1 cut(s) | 115 |
| BstUI | CGCG | 3 cut(s) | 6, 54, 65 |
| BstV1I | GCAGC | 3 cut(s) | 164, 170, 284 |
| BstZI | CGGCCG | 1 cut(s) | 55 |
| BsuRI | GGCC | 3 cut(s) | 57, 75, 221 |
| BtgI | CCRYGG | 1 cut(s) | 222 |
| BtgZI | GCGATG | 1 cut(s) | 253 |
| BtsCI | GGATG | 1 cut(s) | 744 |
| BtsI | GCAGTG | 2 cut(s) | 294, 384 |
| BtsIMutI | CAGTG | 3 cut(s) | 294, 384, 698 |
| BveI | ACCTGC | 1 cut(s) | 349 |
| Cac8I | GCNNGC | 2 cut(s) | 355, 586 |
| CciNI | GCGGCCGC | 1 cut(s) | 55 |
| CfoI | GCGC | 1 cut(s) | 6 |
| Cfr13I | GGNCC | 1 cut(s) | 219 |
| CsiI | ACCWGGT | 1 cut(s) | 400 |
| Csp6I | GTAC | 4 cut(s) | 215, 599, 616, 643 |
| CviAII | CATG | 4 cut(s) | 251, 263, 284, 590 |
| CviQI | GTAC | 4 cut(s) | 215, 599, 616, 643 |
| DdeI | CTNAG | 2 cut(s) | 18, 481 |
| DpnI | GATC | 2 cut(s) | 192, 249 |
| DpnII | GATC | 2 cut(s) | 190, 247 |
| EaeI | YGGCCR | 1 cut(s) | 55 |
| EagI | CGGCCG | 1 cut(s) | 55 |
| EclXI | CGGCCG | 1 cut(s) | 55 |
| Eco24I | GRGCYC | 1 cut(s) | 24 |
| Eco52I | CGGCCG | 1 cut(s) | 55 |
| Eco88I | CYCGRG | 1 cut(s) | 69 |
| EcoRII | CCWGG | 1 cut(s) | 400 |
| EcoT22I | ATGCAT | 2 cut(s) | 206, 445 |
| EcoT38I | GRGCYC | 1 cut(s) | 24 |
| FaeI | CATG | 4 cut(s) | 254, 266, 287, 593 |
| FatI | CATG | 4 cut(s) | 250, 262, 283, 589 |
| FauI | CCCGC | 2 cut(s) | 95, 617 |
| FauNDI | CATATG | 1 cut(s) | 620 |
| FbaI | TGATCA | 2 cut(s) | 190, 247 |
| Fnu4HI | GCNGC | 7 cut(s) | 55, 58, 76, 159, 178, 243, 273 |
| FriOI | GRGCYC | 1 cut(s) | 24 |
| Fsp4HI | GCNGC | 7 cut(s) | 55, 58, 76, 159, 178, 243, 273 |
| FspBI | CTAG | 3 cut(s) | 39, 108, 354 |
| GlaI | GCGC | 1 cut(s) | 5 |
| GluI | GCNGC | 7 cut(s) | 55, 58, 76, 159, 178, 243, 273 |
| GsuI | CTGGAG | 1 cut(s) | 486 |
| HaeIII | GGCC | 3 cut(s) | 57, 75, 221 |
| HhaI | GCGC | 1 cut(s) | 6 |
| Hin1II | CATG | 4 cut(s) | 254, 266, 287, 593 |
| Hin6I | GCGC | 1 cut(s) | 4 |
| HinP1I | GCGC | 1 cut(s) | 4 |
| HinfI | GANTC | 2 cut(s) | 32, 67 |
| HphI | GGTGA | 5 cut(s) | 59, 371, 442, 481, 488 |
| Hpy166II | GTNNAC | 2 cut(s) | 50, 113 |
| Hpy188I | TCNGA | 2 cut(s) | 19, 655 |
| Hpy188III | TCNNGA | 1 cut(s) | 532 |
| Hpy8I | GTNNAC | 2 cut(s) | 50, 113 |
| Hpy99I | CGWCG | 2 cut(s) | 84, 96 |
| HpyAV | CCTTC | 3 cut(s) | 97, 482, 532 |
| HpyCH4V | TGCA | 9 cut(s) | 113, 131, 158, 180, 204, 287, 292, 443, 698 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 137, 242, 305, 350 |
| HpyF3I | CTNAG | 2 cut(s) | 18, 481 |
| Hsp92II | CATG | 4 cut(s) | 254, 266, 287, 593 |
| HspAI | GCGC | 1 cut(s) | 4 |
| Ksp22I | TGATCA | 2 cut(s) | 190, 247 |
| Kzo9I | GATC | 2 cut(s) | 190, 247 |
| LmnI | GCTCC | 3 cut(s) | 65, 383, 400 |
| Lsp1109I | GCAGC | 3 cut(s) | 164, 170, 284 |
| LweI | GCATC | 3 cut(s) | 118, 266, 430 |
| MabI | ACCWGGT | 1 cut(s) | 400 |
| MaeI | CTAG | 3 cut(s) | 39, 108, 354 |
| MaeIII | GTNAC | 4 cut(s) | 25, 370, 451, 476 |
| MalI | GATC | 2 cut(s) | 192, 249 |
| MbiI | CCGCTC | 1 cut(s) | 60 |
| MboI | GATC | 2 cut(s) | 190, 247 |
| MboII | GAAGA | 1 cut(s) | 547 |
| MfeI | CAATTG | 1 cut(s) | 330 |
| MhlI | GDGCHC | 2 cut(s) | 24, 115 |
| MluCI | AATT | 4 cut(s) | 330, 494, 631, 656 |
| MlyI | GAGTC | 1 cut(s) | 61 |
| MmeI | TCCRAC | 1 cut(s) | 346 |
| MnlI | CCTC | 5 cut(s) | 65, 391, 400, 442, 478 |
| Mph1103I | ATGCAT | 2 cut(s) | 206, 445 |
| MseI | TTAA | 4 cut(s) | 152, 458, 659, 672 |
| MspR9I | CCNGG | 1 cut(s) | 402 |
| MunI | CAATTG | 1 cut(s) | 330 |
| MvaI | CCWGG | 1 cut(s) | 402 |
| MvnI | CGCG | 3 cut(s) | 6, 54, 65 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 137, 242, 305, 350 |
| NdeI | CATATG | 1 cut(s) | 620 |
| NdeII | GATC | 2 cut(s) | 190, 247 |
| NheI | GCTAGC | 1 cut(s) | 353 |
| NlaIII | CATG | 4 cut(s) | 254, 266, 287, 593 |
| NlaIV | GGNNCC | 1 cut(s) | 339 |
| NmuCI | GTSAC | 3 cut(s) | 370, 451, 476 |
| NotI | GCGGCCGC | 1 cut(s) | 55 |
| NsiI | ATGCAT | 2 cut(s) | 206, 445 |
| PaeR7I | CTCGAG | 1 cut(s) | 69 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 76, 88 |
| PfeI | GAWTC | 1 cut(s) | 32 |
| PkrI | GCNGC | 7 cut(s) | 56, 59, 77, 160, 179, 244, 274 |
| PleI | GAGTC | 1 cut(s) | 61 |
| PpsI | GAGTC | 1 cut(s) | 61 |
| Psp6I | CCWGG | 1 cut(s) | 400 |
| PspGI | CCWGG | 1 cut(s) | 400 |
| PspN4I | GGNNCC | 1 cut(s) | 339 |
| PspPI | GGNCC | 1 cut(s) | 219 |
| PspXI | VCTCGAGB | 1 cut(s) | 69 |
| PstI | CTGCAG | 1 cut(s) | 160 |
| RsaI | GTAC | 4 cut(s) | 216, 600, 617, 644 |
| RsaNI | GTAC | 4 cut(s) | 215, 599, 616, 643 |
| SaqAI | TTAA | 4 cut(s) | 152, 458, 659, 672 |
| SatI | GCNGC | 7 cut(s) | 55, 58, 76, 159, 178, 243, 273 |
| Sau3AI | GATC | 2 cut(s) | 190, 247 |
| Sau96I | GGNCC | 1 cut(s) | 219 |
| SchI | GAGTC | 1 cut(s) | 61 |
| ScrFI | CCNGG | 1 cut(s) | 402 |
| SduI | GDGCHC | 2 cut(s) | 24, 115 |
| SexAI | ACCWGGT | 1 cut(s) | 400 |
| SfaNI | GCATC | 3 cut(s) | 118, 266, 430 |
| SfcI | CTRYAG | 1 cut(s) | 156 |
| Sfr274I | CTCGAG | 1 cut(s) | 69 |
| SlaI | CTCGAG | 1 cut(s) | 69 |
| SmlI | CTYRAG | 3 cut(s) | 69, 237, 312 |
| SmoI | CTYRAG | 3 cut(s) | 69, 237, 312 |
| SpeI | ACTAGT | 1 cut(s) | 38 |
| Sse9I | AATT | 4 cut(s) | 330, 494, 631, 656 |
| SspMI | CTAG | 3 cut(s) | 39, 108, 354 |
| StyD4I | CCNGG | 1 cut(s) | 400 |
| TaqI | TCGA | 2 cut(s) | 70, 82 |
| TasI | AATT | 4 cut(s) | 330, 494, 631, 656 |
| TauI | GCSGC | 4 cut(s) | 57, 60, 78, 245 |
| TfiI | GAWTC | 1 cut(s) | 32 |
| Tru1I | TTAA | 4 cut(s) | 152, 458, 659, 672 |
| Tru9I | TTAA | 4 cut(s) | 152, 458, 659, 672 |
| TscAI | CASTG | 3 cut(s) | 294, 391, 705 |
| TseFI | GTSAC | 3 cut(s) | 370, 451, 476 |
| TseI | GCWGC | 3 cut(s) | 158, 177, 272 |
| Tsp45I | GTSAC | 3 cut(s) | 370, 451, 476 |
| TspDTI | ATGAA | 1 cut(s) | 637 |
| TspRI | CASTG | 3 cut(s) | 294, 391, 705 |
| VneI | GTGCAC | 1 cut(s) | 111 |
| XapI | RAATTY | 2 cut(s) | 494, 631 |
| XhoI | CTCGAG | 1 cut(s) | 69 |
| XspI | CTAG | 3 cut(s) | 39, 108, 354 |
| Zsp2I | ATGCAT | 2 cut(s) | 206, 445 |