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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 64, 457 |
| AciI | CCGC | 2 cut(s) | 55, 367 |
| AclWI | GGATC | 2 cut(s) | 152, 264 |
| AcoI | YGGCCR | 2 cut(s) | 31, 368 |
| AfaI | GTAC | 1 cut(s) | 241 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 167 |
| AgsI | TTSAA | 1 cut(s) | 86 |
| AjnI | CCWGG | 1 cut(s) | 317 |
| AluBI | AGCT | 2 cut(s) | 220, 388 |
| AluI | AGCT | 2 cut(s) | 220, 388 |
| Alw21I | GWGCWC | 2 cut(s) | 28, 418 |
| Alw26I | GTCTC | 2 cut(s) | 8, 195 |
| AlwI | GGATC | 2 cut(s) | 152, 264 |
| AoxI | GGCC | 3 cut(s) | 31, 170, 368 |
| ApeKI | GCWGC | 1 cut(s) | 4 |
| AspA2I | CCTAGG | 1 cut(s) | 161 |
| AspLEI | GCGC | 1 cut(s) | 454 |
| AspS9I | GGNCC | 1 cut(s) | 170 |
| AsuHPI | GGTGA | 1 cut(s) | 307 |
| AvrII | CCTAGG | 1 cut(s) | 161 |
| BauI | CACGAG | 1 cut(s) | 27 |
| Bbv12I | GWGCWC | 2 cut(s) | 28, 418 |
| BbvI | GCAGC | 1 cut(s) | 16 |
| BccI | CCATC | 1 cut(s) | 239 |
| BceAI | ACGGC | 2 cut(s) | 18, 157 |
| BciT130I | CCWGG | 1 cut(s) | 319 |
| BcoDI | GTCTC | 2 cut(s) | 8, 195 |
| BfaI | CTAG | 3 cut(s) | 162, 183, 399 |
| BfuAI | ACCTGC | 2 cut(s) | 64, 457 |
| BisI | GCNGC | 3 cut(s) | 5, 55, 368 |
| BlnI | CCTAGG | 1 cut(s) | 161 |
| BlsI | GCNGC | 3 cut(s) | 6, 56, 369 |
| Bme1390I | CCNGG | 1 cut(s) | 319 |
| BmgT120I | GGNCC | 1 cut(s) | 170 |
| BmiI | GGNNCC | 1 cut(s) | 309 |
| BmrFI | CCNGG | 1 cut(s) | 319 |
| BmsI | GCATC | 1 cut(s) | 286 |
| BpuEI | CTTGAG | 1 cut(s) | 377 |
| BsaAI | YACGTR | 1 cut(s) | 41 |
| BsaJI | CCNNGG | 2 cut(s) | 161, 318 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 167 |
| Bse118I | RCCGGY | 1 cut(s) | 310 |
| Bse1I | ACTGG | 2 cut(s) | 335, 433 |
| BseBI | CCWGG | 1 cut(s) | 319 |
| BseDI | CCNNGG | 2 cut(s) | 161, 318 |
| BseGI | GGATG | 2 cut(s) | 192, 277 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 167 |
| BseMII | CTCAG | 2 cut(s) | 9, 431 |
| BseNI | ACTGG | 2 cut(s) | 335, 433 |
| BseRI | GAGGAG | 3 cut(s) | 26, 129, 132 |
| BseXI | GCAGC | 1 cut(s) | 16 |
| BshFI | GGCC | 3 cut(s) | 33, 172, 370 |
| BsiHKAI | GWGCWC | 2 cut(s) | 28, 418 |
| BsiSI | CCGG | 1 cut(s) | 311 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 167 |
| BsmAI | GTCTC | 2 cut(s) | 8, 195 |
| BsnI | GGCC | 3 cut(s) | 33, 172, 370 |
| Bsp1286I | GDGCHC | 2 cut(s) | 28, 418 |
| Bsp143I | GATC | 2 cut(s) | 157, 256 |
| BspACI | CCGC | 2 cut(s) | 55, 367 |
| BspANI | GGCC | 3 cut(s) | 33, 172, 370 |
| BspCNI | CTCAG | 2 cut(s) | 10, 430 |
| BspLI | GGNNCC | 1 cut(s) | 309 |
| BspMI | ACCTGC | 2 cut(s) | 64, 457 |
| BspPI | GGATC | 2 cut(s) | 152, 264 |
| BsrFI | RCCGGY | 1 cut(s) | 310 |
| BsrI | ACTGG | 2 cut(s) | 335, 433 |
| BssAI | RCCGGY | 1 cut(s) | 310 |
| BssECI | CCNNGG | 2 cut(s) | 161, 318 |
| BssMI | GATC | 2 cut(s) | 157, 256 |
| BssSI | CACGAG | 1 cut(s) | 27 |
| BssT1I | CCWWGG | 1 cut(s) | 161 |
| Bst2BI | CACGAG | 1 cut(s) | 27 |
| Bst2UI | CCWGG | 1 cut(s) | 319 |
| BstBAI | YACGTR | 1 cut(s) | 41 |
| BstDEI | CTNAG | 3 cut(s) | 18, 69, 417 |
| BstEII | GGTNACC | 1 cut(s) | 313 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 165 |
| BstF5I | GGATG | 2 cut(s) | 192, 277 |
| BstHHI | GCGC | 1 cut(s) | 454 |
| BstKTI | GATC | 2 cut(s) | 160, 259 |
| BstMAI | GTCTC | 2 cut(s) | 8, 195 |
| BstMBI | GATC | 2 cut(s) | 157, 256 |
| BstNI | CCWGG | 1 cut(s) | 319 |
| BstPI | GGTNACC | 1 cut(s) | 313 |
| BstSCI | CCNGG | 1 cut(s) | 317 |
| BstV1I | GCAGC | 1 cut(s) | 16 |
| BstX2I | RGATCY | 1 cut(s) | 256 |
| BstYI | RGATCY | 1 cut(s) | 256 |
| BsuRI | GGCC | 3 cut(s) | 33, 172, 370 |
| BtsCI | GGATG | 2 cut(s) | 192, 277 |
| BtsIMutI | CAGTG | 1 cut(s) | 342 |
| BveI | ACCTGC | 2 cut(s) | 64, 457 |
| CfoI | GCGC | 1 cut(s) | 454 |
| Cfr10I | RCCGGY | 1 cut(s) | 310 |
| Cfr13I | GGNCC | 1 cut(s) | 170 |
| Csp6I | GTAC | 1 cut(s) | 240 |
| CviAII | CATG | 2 cut(s) | 8, 253 |
| CviJI | RGCY | 7 cut(s) | 33, 172, 220, 310, 341, 370, 388 |
| CviKI_1 | RGCY | 7 cut(s) | 33, 172, 220, 310, 341, 370, 388 |
| CviQI | GTAC | 1 cut(s) | 240 |
| DdeI | CTNAG | 3 cut(s) | 18, 69, 417 |
| DpnI | GATC | 2 cut(s) | 159, 258 |
| DpnII | GATC | 2 cut(s) | 157, 256 |
| DraI | TTTAAA | 1 cut(s) | 459 |
| EaeI | YGGCCR | 2 cut(s) | 31, 368 |
| Eco130I | CCWWGG | 1 cut(s) | 161 |
| Eco91I | GGTNACC | 1 cut(s) | 313 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 165 |
| EcoO65I | GGTNACC | 1 cut(s) | 313 |
| EcoRII | CCWGG | 1 cut(s) | 317 |
| EcoT14I | CCWWGG | 1 cut(s) | 161 |
| ErhI | CCWWGG | 1 cut(s) | 161 |
| FaeI | CATG | 2 cut(s) | 11, 256 |
| FaiI | YATR | 7 cut(s) | 9, 44, 81, 254, 330, 332, 347 |
| FatI | CATG | 2 cut(s) | 7, 252 |
| Fnu4HI | GCNGC | 3 cut(s) | 5, 55, 368 |
| FokI | GGATG | 2 cut(s) | 199, 264 |
| Fsp4HI | GCNGC | 3 cut(s) | 5, 55, 368 |
| FspBI | CTAG | 3 cut(s) | 162, 183, 399 |
| GlaI | GCGC | 1 cut(s) | 453 |
| GluI | GCNGC | 3 cut(s) | 5, 55, 368 |
| HaeIII | GGCC | 3 cut(s) | 33, 172, 370 |
| HapII | CCGG | 1 cut(s) | 311 |
| HhaI | GCGC | 1 cut(s) | 454 |
| Hin1II | CATG | 2 cut(s) | 11, 256 |
| Hin6I | GCGC | 1 cut(s) | 452 |
| HinP1I | GCGC | 1 cut(s) | 452 |
| HinfI | GANTC | 1 cut(s) | 395 |
| HpaII | CCGG | 1 cut(s) | 311 |
| HphI | GGTGA | 1 cut(s) | 307 |
| Hpy166II | GTNNAC | 1 cut(s) | 38 |
| Hpy188I | TCNGA | 1 cut(s) | 420 |
| Hpy8I | GTNNAC | 1 cut(s) | 38 |
| Hpy99I | CGWCG | 2 cut(s) | 54, 63 |
| HpyAV | CCTTC | 4 cut(s) | 161, 206, 297, 355 |
| HpyCH4IV | ACGT | 2 cut(s) | 40, 61 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 233, 298 |
| HpyF3I | CTNAG | 3 cut(s) | 18, 69, 417 |
| HpySE526I | ACGT | 2 cut(s) | 40, 61 |
| Hsp92II | CATG | 2 cut(s) | 11, 256 |
| HspAI | GCGC | 1 cut(s) | 452 |
| Kzo9I | GATC | 2 cut(s) | 157, 256 |
| LmnI | GCTCC | 3 cut(s) | 289, 307, 385 |
| LpnPI | CCDG | 9 cut(s) | 59, 80, 294, 304, 315, 324, 331, 348, 414 |
| Lsp1109I | GCAGC | 1 cut(s) | 16 |
| LweI | GCATC | 1 cut(s) | 286 |
| MaeI | CTAG | 3 cut(s) | 162, 183, 399 |
| MaeII | ACGT | 2 cut(s) | 40, 61 |
| MaeIII | GTNAC | 3 cut(s) | 248, 313, 424 |
| MalI | GATC | 2 cut(s) | 159, 258 |
| MboI | GATC | 2 cut(s) | 157, 256 |
| MboII | GAAGA | 1 cut(s) | 110 |
| MflI | RGATCY | 1 cut(s) | 256 |
| MhlI | GDGCHC | 2 cut(s) | 28, 418 |
| MnlI | CCTC | 5 cut(s) | 4, 13, 150, 153, 430 |
| MseI | TTAA | 1 cut(s) | 458 |
| MslI | CAYNNNNRTG | 2 cut(s) | 108, 185 |
| MspI | CCGG | 1 cut(s) | 311 |
| MspR9I | CCNGG | 1 cut(s) | 319 |
| MvaI | CCWGG | 1 cut(s) | 319 |
| NdeII | GATC | 2 cut(s) | 157, 256 |
| NlaIII | CATG | 2 cut(s) | 11, 256 |
| NlaIV | GGNNCC | 1 cut(s) | 309 |
| NmuCI | GTSAC | 1 cut(s) | 313 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 46, 58 |
| PfeI | GAWTC | 1 cut(s) | 395 |
| PkrI | GCNGC | 3 cut(s) | 6, 56, 369 |
| Ppu21I | YACGTR | 1 cut(s) | 41 |
| Psp6I | CCWGG | 1 cut(s) | 317 |
| PspEI | GGTNACC | 1 cut(s) | 313 |
| PspGI | CCWGG | 1 cut(s) | 317 |
| PspN4I | GGNNCC | 1 cut(s) | 309 |
| PspPI | GGNCC | 1 cut(s) | 170 |
| PsuI | RGATCY | 1 cut(s) | 256 |
| RsaI | GTAC | 1 cut(s) | 241 |
| RsaNI | GTAC | 1 cut(s) | 240 |
| RseI | CAYNNNNRTG | 2 cut(s) | 108, 185 |
| SaqAI | TTAA | 1 cut(s) | 458 |
| SatI | GCNGC | 3 cut(s) | 5, 55, 368 |
| Sau3AI | GATC | 2 cut(s) | 157, 256 |
| Sau96I | GGNCC | 1 cut(s) | 170 |
| ScrFI | CCNGG | 1 cut(s) | 319 |
| SduI | GDGCHC | 2 cut(s) | 28, 418 |
| SetI | ASST | 9 cut(s) | 43, 64, 78, 222, 304, 366, 390, 441, 451 |
| SfaNI | GCATC | 1 cut(s) | 286 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 108, 185 |
| SmlI | CTYRAG | 1 cut(s) | 356 |
| SmoI | CTYRAG | 1 cut(s) | 356 |
| SsiI | CCGC | 2 cut(s) | 55, 367 |
| SspMI | CTAG | 3 cut(s) | 162, 183, 399 |
| StyD4I | CCNGG | 1 cut(s) | 317 |
| StyI | CCWWGG | 1 cut(s) | 161 |
| TaiI | ACGT | 2 cut(s) | 43, 64 |
| TauI | GCSGC | 2 cut(s) | 57, 370 |
| TfiI | GAWTC | 1 cut(s) | 395 |
| Tru1I | TTAA | 1 cut(s) | 458 |
| Tru9I | TTAA | 1 cut(s) | 458 |
| TscAI | CASTG | 1 cut(s) | 342 |
| TseFI | GTSAC | 1 cut(s) | 313 |
| TseI | GCWGC | 1 cut(s) | 4 |
| Tsp45I | GTSAC | 1 cut(s) | 313 |
| TspDTI | ATGAA | 1 cut(s) | 287 |
| TspRI | CASTG | 1 cut(s) | 342 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 165 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 220 |
| XmaJI | CCTAGG | 1 cut(s) | 161 |
| XspI | CTAG | 3 cut(s) | 162, 183, 399 |