Rmu_sc0007333.1_g000018

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007333.1
OG0000044
Physical Location & Seq
Forward (+)
89672 .. 90973
1302 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007333.1_g000018.1.cds

Sequence Viewer

Length: 1302 bp
atgaaacccacttttgcttcagttctcaactcggagccccctccccttggtttctgcattgacgatcttcagcctccttttctggagaatggacttgtctcagtccggatttcagaggagccctacctaagaggattagcgcgctgcaagactaatttagtcgggcgcttggtgttgccctcgaaaacgcctccacttaagtcacatgaattaatgcagcagctccgggctctatggccctccctcagcgattggtctgtttctccccttggaagggggttttttatgcttcaatttcagagtatggaagacatgcaaaaaatctggtcgttggggtcgattagcttgcagcggggtgtccttcgtttgattaagtggtcacctagcttttccccttctacgtacaaaaacaccttcgcccaagtctgggttagactttgggacttgggatttgatttctgggagcaacaaacattgtttgagattgcacggggaattggagttcccttgaaacttgaccagcgtactgtggacctaagtgttggactttatgctagggtactggtggatgtggacctttcgcaggacttgcctcagcagctccgtgtgactcgttctacgggacaacaaattgttatcggggtggagtttgaagcactaccaagtgtatgttctaaatgtagaatcgttgggcatcagagtgctacctgcagggtggtaaatgaggttcttccaacagaggaggtcacggaaacacgtggtcgttccctccaacgctcgagtcgcagacggaaaagaactcgagtgtctcgtaaaaaaattgaacaacaggttgtccaggcctttgtacggcaggaggcagttgaggcggaagttgttgcccccattgatcttgttcatgctgagcatgtgttggaggaagggagggaggttccagacctggtttgtcaacaaatctcagaccaggcttcttctttcgagagcgtcccacctgggtttcagaggctagaaccgaatgactcggaggttgcagtaccctatgccagtattactatcaaccctgtagctttgggttgtgacaaaacaagtctggtgccttcttgctatgtgccagaccaggatgctctcttaattggtgagacctccacttttagagaggaggggaaatttacgccagtgatctctaagaaaaccaaaaagcagctaaaaaaggtggataagccgattgttaaggtgcaaggtaaaaagaatgttacaggacgtgctttcatgcttaagggagcaaaacacaaactcttttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

433

Amino Acids

48.65

Weight (kDa)

9.18

Isoelectric Point (pI)

49.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000044)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07760 AT5G28823
fragaria_vesca FvH4_1g13572 FvH4_2g03281 FvH4_2g04691 FvH4_2g08332 FvH4_2g08333 FvH4_2g15313 FvH4_2g26101 FvH4_2g29541 FvH4_3g06911 FvH4_3g34351 FvH4_3g43733 FvH4_4g02432 FvH4_4g05601 FvH4_4g08213 FvH4_4g09961 FvH4_4g10131 FvH4_4g20001 FvH4_4g20002 FvH4_5g01051 FvH4_5g01401 FvH4_5g27943 FvH4_6g09220 FvH4_6g17383 FvH4_6g35491 FvH4_6g46421 FvH4_7g04151 FvH4_7g13962 FvH4_7g18611 FvH4_7g19491 FvH4_7g19511 FvH4_7g26562
malus_domestica MD06G1221600.v1.1
pyrus_communis pycom10g21150
rosa_chinensis RchiOBHm_Chr1g0337571 RchiOBHm_Chr2g0168771 RchiOBHm_Chr3g0453631 RchiOBHm_Chr6g0278581
rosa_laevigata RLG00000001899 RLG00000001925 RLG00000002026 RLG00000003410 RLG00000003767 RLG00000004304 RLG00000004473 RLG00000004677 RLG00000006856 RLG00000007994 RLG00000009888 RLG00000011627 RLG00000012174 RLG00000012217 RLG00000013118 RLG00000013736 RLG00000014194 RLG00000014251 RLG00000015011 RLG00000015057 RLG00000015235 RLG00000017416 RLG00000018052 RLG00000018537 RLG00000019968 RLG00000020096 RLG00000020263 RLG00000022606 RLG00000023119 RLG00000028111 RLG00000029686 RLG00000030126 RLG00000031124 RLG00000031236 RLG00000032766 RLG00000033171 RLG00000033548 RLG00000033987 RLG00000034062 RLG00000035115 RLG00000035863
rosa_multiflora Rmu_co8036712.1_g000001 Rmu_co8080248.1_g000001 Rmu_co8208334.1_g000001 Rmu_co8253451.1_g000001 Rmu_co8393241.1_g000001 Rmu_co8522225.1_g000005 Rmu_sc0000060.1_g000030 Rmu_sc0000060.1_g000031 Rmu_sc0000060.1_g000032 Rmu_sc0000090.1_g000008 Rmu_sc0000149.1_g000051 Rmu_sc0000149.1_g000058 Rmu_sc0000309.1_g000050 Rmu_sc0000370.1_g000022 Rmu_sc0000370.1_g000023 Rmu_sc0000370.1_g000024 Rmu_sc0000418.1_g000018 Rmu_sc0000427.1_g000014 Rmu_sc0000427.1_g000015 Rmu_sc0000434.1_g000008 Rmu_sc0000487.1_g000038 Rmu_sc0000487.1_g000039 Rmu_sc0000569.1_g000029 Rmu_sc0000580.1_g000097 Rmu_sc0000595.1_g000068 Rmu_sc0000607.1_g000027 Rmu_sc0000738.1_g000004 Rmu_sc0000758.1_g000001 Rmu_sc0000758.1_g000002 Rmu_sc0000870.1_g000019 Rmu_sc0000924.1_g000040 Rmu_sc0000924.1_g000041 Rmu_sc0000999.1_g000037 Rmu_sc0001001.1_g000001 Rmu_sc0001010.1_g000080 Rmu_sc0001075.1_g000041 Rmu_sc0001097.1_g000016 Rmu_sc0001173.1_g000020 Rmu_sc0001258.1_g000010 Rmu_sc0001425.1_g000031 Rmu_sc0001493.1_g000020 Rmu_sc0001493.1_g000021 Rmu_sc0001644.1_g000024 Rmu_sc0001648.1_g000039 Rmu_sc0001662.1_g000002 Rmu_sc0001849.1_g000046 Rmu_sc0001851.1_g000038 Rmu_sc0001861.1_g000006 Rmu_sc0001899.1_g000008 Rmu_sc0002231.1_g000023 Rmu_sc0002393.1_g000012 Rmu_sc0002515.1_g000010 Rmu_sc0002551.1_g000013 Rmu_sc0002680.1_g000029 Rmu_sc0002700.1_g000030 Rmu_sc0002700.1_g000031 Rmu_sc0002709.1_g000035 Rmu_sc0002779.1_g000017 Rmu_sc0003267.1_g000040 Rmu_sc0003306.1_g000009 Rmu_sc0003338.1_g000014 Rmu_sc0003522.1_g000038 Rmu_sc0003522.1_g000039 Rmu_sc0003653.1_g000031 Rmu_sc0003901.1_g000003 Rmu_sc0003920.1_g000009 Rmu_sc0004014.1_g000009 Rmu_sc0004016.1_g000013 Rmu_sc0004031.1_g000002 Rmu_sc0004106.1_g000001 Rmu_sc0004432.1_g000004 Rmu_sc0004481.1_g000020 Rmu_sc0004874.1_g000005 Rmu_sc0004928.1_g000005 Rmu_sc0005065.1_g000053 Rmu_sc0005091.1_g000005 Rmu_sc0005217.1_g000015 Rmu_sc0005242.1_g000002 Rmu_sc0005300.1_g000011 Rmu_sc0005400.1_g000004 Rmu_sc0005486.1_g000007 Rmu_sc0005527.1_g000015 Rmu_sc0006059.1_g000021 Rmu_sc0006087.1_g000004 Rmu_sc0006184.1_g000006 Rmu_sc0006184.1_g000007 Rmu_sc0006578.1_g000006 Rmu_sc0006730.1_g000010 Rmu_sc0006736.1_g000030 Rmu_sc0006736.1_g000033 Rmu_sc0007333.1_g000018 Rmu_sc0007856.1_g000010 Rmu_sc0008231.1_g000003 Rmu_sc0009862.1_g000012 Rmu_sc0010547.1_g000001 Rmu_sc0010547.1_g000003 Rmu_sc0010632.1_g000012 Rmu_sc0010747.1_g000008 Rmu_sc0011075.1_g000009 Rmu_sc0011565.1_g000004 Rmu_sc0011641.1_g000003 Rmu_sc0013102.1_g000013 Rmu_sc0013160.1_g000006 Rmu_sc0014846.1_g000004 Rmu_sc0017037.1_g000003 Rmu_sc0018203.1_g000001 Rmu_sc0018204.1_g000001 Rmu_sc0018348.1_g000001 Rmu_sc0019354.1_g000002 Rmu_sc0021630.1_g000002 Rmu_sc0022987.1_g000002 Rmu_sc0024469.1_g000005 Rmu_sc0033519.1_g000001 Rmu_sc0033519.1_g000002 Rmu_sc0033519.1_g000003 Rmu_sc0042775.1_g000001 Rmu_ssc0000110.1_g000003 Rmu_ssc0000110.1_g000004 Rmu_ssc0000126.1_g000068 Rmu_ssc0000200.1_g000007 Rmu_ssc0000295.1_g000003 Rmu_ssc0000295.1_g000004 Rmu_ssc0000299.1_g000010 Rmu_ssc0000308.1_g000024 Rmu_ssc0000339.1_g000006 Rmu_ssc0000385.1_g000012 Rmu_ssc0000409.1_g000004 Rmu_ssc0000421.1_g000004
rosa_roxburghii Rroxscaffold_156G00440360 Rroxscaffold_166G00440800 Rroxscaffold_1G00039040 Rroxscaffold_1G00039050 Rroxscaffold_1G00073950 Rroxscaffold_2G00091710 Rroxscaffold_2G00120050 Rroxscaffold_2G00122590 Rroxscaffold_3G00219700 Rroxscaffold_3G00264140 Rroxscaffold_4G00290600 Rroxscaffold_4G00323610 Rroxscaffold_4G00328460 Rroxscaffold_5G00343440 Rroxscaffold_5G00343570 Rroxscaffold_5G00378540 Rroxscaffold_5G00385090 Rroxscaffold_7G00169130 Rroxscaffold_7G00216420
rosa_rugosa Rorug01G0065800 Rorug01G0073500 Rorug01G0091700 Rorug01G0096500 Rorug01G0204700.1 Rorug01G0249100 Rorug01G0333800 Rorug01G0333900 Rorug01G0339500 Rorug01G0431300 Rorug02G0085400 Rorug02G0117500 Rorug02G0130900 Rorug02G0178800 Rorug02G0226700 Rorug02G0336300 Rorug02G0338700 Rorug02G0351400 Rorug02G0459900 Rorug03G0187000 Rorug03G0223700 Rorug03G0291300 Rorug03G0291300 Rorug03G0311100 Rorug03G0316900 Rorug03G0346000 Rorug04G0014500 Rorug04G0014600 Rorug04G0124100 Rorug04G0136500 Rorug04G0302000 Rorug04G0338100 Rorug04G0338200 Rorug04G0413100 Rorug05G0182200 Rorug05G0226500 Rorug05G0273300 Rorug05G0292200 Rorug05G0292200 Rorug05G0392500 Rorug05G0394500 Rorug05G0394600 Rorug05G0505600.1 Rorug06G0351400 Rorug06G0393400 Rorug06G0393600 Rorug06G0470000 Rorug07G0063100 Rorug07G0086800 Rorug07G0109200 Rorug07G0236100
rosa_samantha Rh1AG010800 Rh1AG011100 Rh1AG064900 Rh1AG088000 Rh1AG207100 Rh1AG262000 Rh1AG300800 Rh1BG043000 Rh1BG144600 Rh1BG180700 Rh1BG180800 Rh1BG328800 Rh1BG399400 Rh1CG041400 Rh1CG047300 Rh1CG379700 Rh1DG036500 Rh1DG083000 Rh1DG210700 Rh1DG210800 Rh1DG231100 Rh2AG007900 Rh2AG055500 Rh2AG339100 Rh2AG368100 Rh2BG243300 Rh2BG258900 Rh2BG292000 Rh2BG333500 Rh2BG387300 Rh2BG612800 Rh2BG619100 Rh2CG026500 Rh2CG163600 Rh2CG535700 Rh2DG186400 Rh2DG235000 Rh2DG314500 Rh2DG388500 Rh2DG391400 Rh2DG496900 Rh2DG526700 Rh2DG570700 Rh3AG330700 Rh3BG266900 Rh3CG236000 Rh3CG340400 Rh3DG090000 Rh3DG278400 Rh3DG297600 Rh3DG362600 Rh4AG001300 Rh4AG023300 Rh4AG097100 Rh4AG427000 Rh4BG029400 Rh4BG032400 Rh4BG086000 Rh4BG249200 Rh4CG001900 Rh4CG040600 Rh4CG093000 Rh4CG106300 Rh4CG113200 Rh4CG113900 Rh4DG002300 Rh4DG144400 Rh4DG234200 Rh5AG043700 Rh5AG084900 Rh5AG161500 Rh5AG409000 Rh5AG457200 Rh5AG457900 Rh5AG473700 Rh5AG520600 Rh5BG042100 Rh5BG124100 Rh5BG323500 Rh5BG417200 Rh5BG443700 Rh5BG451500 Rh5BG464900 Rh5BG470400 Rh5BG522500 Rh5CG068800 Rh5CG178300 Rh5CG231000 Rh5CG258600 Rh5CG394500 Rh5CG473700 Rh5DG164700 Rh5DG235400 Rh5DG261300 Rh5DG304900 Rh5DG334500 Rh5DG424300 Rh5DG458400 Rh5DG478600 Rh5DG552300 Rh5DG552700 Rh6AG037000 Rh6AG042100 Rh6AG255500 Rh6AG283400 Rh6AG291800 Rh6BG049600 Rh6BG080700 Rh6BG114600 Rh6BG128900 Rh6BG352500 Rh6CG052400 Rh6CG112900 Rh6CG113000 Rh6CG131300 Rh6CG157700 Rh6CG243200 Rh6CG254100 Rh6CG275700 Rh6CG299700 Rh6CG309100 Rh6CG317600 Rh6CG342600 Rh6CG471900 Rh6DG038200 Rh6DG102300 Rh6DG114400 Rh6DG225900 Rh6DG292900 Rh6DG320700 Rh6DG512800 Rh7AG217700 Rh7AG313900 Rh7AG446000 Rh7AG472600 Rh7BG223100 Rh7BG349900 Rh7BG352000 Rh7CG160200 Rh7CG233900 Rh7CG242700 Rh7CG273900 Rh7CG306400 Rh7CG322200 Rh7DG053800 Rh7DG077800 Rh7DG227700 Rh7DG404800
rosa_wichuraiana Rw0G003990 Rw2G022110 Rw2G024890 Rw6G005700 Rw7G008770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 716
AccB1I GGYRCC 1 cut(s) 1093
AccII CGCG 1 cut(s) 142
AccIII TCCGGA 1 cut(s) 105
AciI CCGC 2 cut(s) 352, 869
AcsI RAATTY 1 cut(s) 1166
AcuI CTGAAG 1 cut(s) 53
AcvI CACGTG 1 cut(s) 758
AfaI GTAC 5 cut(s) 404, 526, 561, 849, 1035
AfiI CCNNNNNNNGG 7 cut(s) 47, 273, 274, 426, 427, 583, 849
AflII CTTAAG 2 cut(s) 197, 1274
AflIII ACRYGT 1 cut(s) 755
AgsI TTSAA 4 cut(s) 293, 511, 653, 824
AjiI CACGTC 1 cut(s) 1262
AjnI CCWGG 5 cut(s) 837, 939, 963, 991, 1116
AjuI GAANNNNNNNTTGG 2 cut(s) 655, 687
AloI GAACNNNNNNTCC 2 cut(s) 486, 518
AluBI AGCT 6 cut(s) 223, 345, 387, 601, 1067, 1204
AluI AGCT 6 cut(s) 223, 345, 387, 601, 1067, 1204
Alw26I GTCTC 3 cut(s) 103, 813, 1133
Ama87I CYCGRG 2 cut(s) 778, 801
Aor13HI TCCGGA 1 cut(s) 105
AoxI GGCC 2 cut(s) 236, 840
ApeKI GCWGC 6 cut(s) 144, 217, 220, 349, 598, 1201
ApoI RAATTY 1 cut(s) 1166
ArsI GACNNNNNNTTYG 2 cut(s) 434, 466
AseI ATTAAT 1 cut(s) 212
AspLEI GCGC 3 cut(s) 142, 144, 168
AspS9I GGNCC 3 cut(s) 237, 532, 574
AsuC2I CCSGG 1 cut(s) 227
AsuHPI GGTGA 2 cut(s) 372, 1148
AvaI CYCGRG 2 cut(s) 778, 801
AvaII GGWCC 2 cut(s) 532, 574
BanI GGYRCC 1 cut(s) 1093
BanII GRGCYC 3 cut(s) 39, 123, 232
BbrPI CACGTG 1 cut(s) 758
BbsI GAAGAC 1 cut(s) 315
BbvCI CCTCAGC 2 cut(s) 245, 594
BbvI GCAGC 6 cut(s) 131, 229, 232, 361, 610, 1213
BceAI ACGGC 1 cut(s) 866
BcgI CGANNNNNNTGC 2 cut(s) 328, 362
BciT130I CCWGG 5 cut(s) 839, 941, 965, 993, 1118
BcnI CCSGG 1 cut(s) 227
BcoDI GTCTC 3 cut(s) 103, 813, 1133
BfaI CTAG 3 cut(s) 384, 555, 1007
BfmI CTRYAG 2 cut(s) 709, 1062
BfoI RGCGCY 1 cut(s) 169
BfrI CTTAAG 2 cut(s) 197, 1274
BfuAI ACCTGC 1 cut(s) 716
BisI GCNGC 6 cut(s) 145, 218, 221, 350, 599, 1202
BlpI GCTNAGC 1 cut(s) 903
BlsI GCNGC 6 cut(s) 146, 219, 222, 351, 600, 1203
Bme1390I CCNGG 6 cut(s) 227, 839, 941, 965, 993, 1118
Bme18I GGWCC 2 cut(s) 532, 574
BmeT110I CYCGRG 2 cut(s) 778, 801
BmgBI CACGTC 1 cut(s) 1262
BmgT120I GGNCC 3 cut(s) 237, 532, 574
BmiI GGNNCC 4 cut(s) 36, 120, 933, 1095
BmrFI CCNGG 6 cut(s) 227, 839, 941, 965, 993, 1118
BmsI GCATC 2 cut(s) 703, 1111
BpiI GAAGAC 1 cut(s) 315
BpmI CTGGAG 1 cut(s) 104
Bpu10I CCTNAGC 2 cut(s) 245, 594
Bpu1102I GCTNAGC 1 cut(s) 903
BpuMI CCSGG 1 cut(s) 227
BsaAI YACGTR 2 cut(s) 402, 758
BsaI GGTCTC 1 cut(s) 1133
BsaJI CCNNGG 3 cut(s) 46, 268, 992
BsaWI WCCGGW 1 cut(s) 105
Bsc4I CCNNNNNNNGG 7 cut(s) 47, 273, 274, 426, 427, 583, 849
Bse1I ACTGG 3 cut(s) 567, 1044, 1175
BseAI TCCGGA 1 cut(s) 105
BseBI CCWGG 5 cut(s) 839, 941, 965, 993, 1118
BseDI CCNNGG 3 cut(s) 46, 268, 992
BseGI GGATG 2 cut(s) 574, 1126
BseLI CCNNNNNNNGG 7 cut(s) 47, 273, 274, 426, 427, 583, 849
BseMII CTCAG 5 cut(s) 114, 259, 608, 894, 972
BseNI ACTGG 3 cut(s) 567, 1044, 1175
BsePI GCGCGC 1 cut(s) 140
BseRI GAGGAG 3 cut(s) 131, 755, 1172
BseXI GCAGC 6 cut(s) 131, 229, 232, 361, 610, 1213
Bsh1236I CGCG 1 cut(s) 142
BshFI GGCC 2 cut(s) 238, 842
BshNI GGYRCC 1 cut(s) 1093
BsiHKCI CYCGRG 2 cut(s) 778, 801
BsiSI CCGG 2 cut(s) 106, 226
BslFI GGGAC 3 cut(s) 455, 636, 971
BslI CCNNNNNNNGG 7 cut(s) 47, 273, 274, 426, 427, 583, 849
BsmAI GTCTC 3 cut(s) 103, 813, 1133
BsmFI GGGAC 3 cut(s) 455, 636, 971
BsnI GGCC 2 cut(s) 238, 842
Bso31I GGTCTC 1 cut(s) 1133
BsoBI CYCGRG 2 cut(s) 778, 801
Bsp1286I GDGCHC 3 cut(s) 39, 123, 232
Bsp13I TCCGGA 1 cut(s) 105
Bsp143I GATC 3 cut(s) 64, 889, 1179
Bsp1720I GCTNAGC 1 cut(s) 903
BspACI CCGC 2 cut(s) 352, 869
BspANI GGCC 2 cut(s) 238, 842
BspCNI CTCAG 5 cut(s) 113, 258, 607, 895, 971
BspEI TCCGGA 1 cut(s) 105
BspFNI CGCG 1 cut(s) 142
BspLI GGNNCC 4 cut(s) 36, 120, 933, 1095
BspMAI CTGCAG 1 cut(s) 713
BspMI ACCTGC 1 cut(s) 716
BspT107I GGYRCC 1 cut(s) 1093
BspTI CTTAAG 2 cut(s) 197, 1274
BspTNI GGTCTC 1 cut(s) 1133
BsrI ACTGG 3 cut(s) 567, 1044, 1175
BssECI CCNNGG 3 cut(s) 46, 268, 992
BssHII GCGCGC 1 cut(s) 140
BssMI GATC 3 cut(s) 64, 889, 1179
BssT1I CCWWGG 2 cut(s) 46, 268
Bst2UI CCWGG 5 cut(s) 839, 941, 965, 993, 1118
Bst4CI ACNGT 1 cut(s) 529
BstAFI CTTAAG 2 cut(s) 197, 1274
BstAPI GCANNNNNTGC 1 cut(s) 589
BstBAI YACGTR 2 cut(s) 402, 758
BstC8I GCNNGC 2 cut(s) 142, 347
BstDEI CTNAG 8 cut(s) 100, 128, 245, 536, 594, 903, 958, 1185
BstEII GGTNACC 1 cut(s) 378
BstENI CCTNNNNNAGG 1 cut(s) 581
BstF5I GGATG 2 cut(s) 574, 1126
BstFNI CGCG 1 cut(s) 142
BstH2I RGCGCY 1 cut(s) 169
BstHHI GCGC 3 cut(s) 142, 144, 168
BstKTI GATC 3 cut(s) 67, 892, 1182
BstMAI GTCTC 3 cut(s) 103, 813, 1133
BstMBI GATC 3 cut(s) 64, 889, 1179
BstMWI GCNNNNNNNGC 4 cut(s) 589, 598, 783, 866
BstNI CCWGG 5 cut(s) 839, 941, 965, 993, 1118
BstNSI RCATGY 2 cut(s) 316, 911
BstPI GGTNACC 1 cut(s) 378
BstSCI CCNGG 6 cut(s) 225, 837, 939, 963, 991, 1116
BstSFI CTRYAG 2 cut(s) 709, 1062
BstSNI TACGTA 1 cut(s) 402
BstUI CGCG 1 cut(s) 142
BstV1I GCAGC 6 cut(s) 131, 229, 232, 361, 610, 1213
BstV2I GAAGAC 1 cut(s) 315
BsuRI GGCC 2 cut(s) 238, 842
BtrI CACGTC 1 cut(s) 1262
BtsCI GGATG 2 cut(s) 574, 1126
BtsIMutI CAGTG 1 cut(s) 1182
BveI ACCTGC 1 cut(s) 716
Cac8I GCNNGC 2 cut(s) 142, 347
CfoI GCGC 3 cut(s) 142, 144, 168
Cfr13I GGNCC 3 cut(s) 237, 532, 574
CseI GACGC 1 cut(s) 973
CsiI ACCWGGT 1 cut(s) 939
Csp6I GTAC 5 cut(s) 403, 525, 560, 848, 1034
CviAII CATG 5 cut(s) 206, 313, 899, 908, 1270
CviQI GTAC 5 cut(s) 403, 525, 560, 848, 1034
DdeI CTNAG 8 cut(s) 100, 128, 245, 536, 594, 903, 958, 1185
DpnI GATC 3 cut(s) 66, 891, 1181
DpnII GATC 3 cut(s) 64, 889, 1179
EciI GGCGGA 1 cut(s) 884
Eco105I TACGTA 1 cut(s) 402
Eco130I CCWWGG 2 cut(s) 46, 268
Eco147I AGGCCT 1 cut(s) 842
Eco24I GRGCYC 3 cut(s) 39, 123, 232
Eco31I GGTCTC 1 cut(s) 1133
Eco47I GGWCC 2 cut(s) 532, 574
Eco57I CTGAAG 1 cut(s) 53
Eco72I CACGTG 1 cut(s) 758
Eco88I CYCGRG 2 cut(s) 778, 801
Eco91I GGTNACC 1 cut(s) 378
EcoNI CCTNNNNNAGG 1 cut(s) 581
EcoO65I GGTNACC 1 cut(s) 378
EcoRII CCWGG 5 cut(s) 837, 939, 963, 991, 1116
EcoT14I CCWWGG 2 cut(s) 46, 268
EcoT38I GRGCYC 3 cut(s) 39, 123, 232
ErhI CCWWGG 2 cut(s) 46, 268
FaeI CATG 5 cut(s) 209, 316, 902, 911, 1273
FaqI GGGAC 3 cut(s) 455, 636, 971
FatI CATG 5 cut(s) 205, 312, 898, 907, 1269
FauI CCCGC 1 cut(s) 345
Fnu4HI GCNGC 6 cut(s) 145, 218, 221, 350, 599, 1202
FokI GGATG 2 cut(s) 581, 1133
FriOI GRGCYC 3 cut(s) 39, 123, 232
Fsp4HI GCNGC 6 cut(s) 145, 218, 221, 350, 599, 1202
FspBI CTAG 3 cut(s) 384, 555, 1007
GlaI GCGC 3 cut(s) 141, 143, 167
GluI GCNGC 6 cut(s) 145, 218, 221, 350, 599, 1202
GsuI CTGGAG 1 cut(s) 104
HaeII RGCGCY 1 cut(s) 169
HaeIII GGCC 2 cut(s) 238, 842
HapII CCGG 2 cut(s) 106, 226
HgaI GACGC 1 cut(s) 973
HhaI GCGC 3 cut(s) 142, 144, 168
Hin1II CATG 5 cut(s) 209, 316, 902, 911, 1273
Hin6I GCGC 3 cut(s) 140, 142, 166
HinP1I GCGC 3 cut(s) 140, 142, 166
HincII GTYRAC 1 cut(s) 950
HindII GTYRAC 1 cut(s) 950
HinfI GANTC 4 cut(s) 610, 684, 781, 1019
HpaII CCGG 2 cut(s) 106, 226
HphI GGTGA 2 cut(s) 372, 1148
Hpy166II GTNNAC 3 cut(s) 532, 574, 950
Hpy188I TCNGA 7 cut(s) 34, 115, 300, 699, 961, 1002, 1024
Hpy188III TCNNGA 4 cut(s) 83, 106, 935, 979
Hpy8I GTNNAC 3 cut(s) 532, 574, 950
HpyAV CCTTC 6 cut(s) 267, 371, 405, 424, 914, 1107
HpyCH4III ACNGT 1 cut(s) 529
HpyCH4IV ACGT 3 cut(s) 401, 757, 1261
HpyCH4V TGCA 9 cut(s) 57, 147, 217, 316, 349, 488, 711, 1031, 1237
HpyF10VI GCNNNNNNNGC 4 cut(s) 589, 598, 783, 866
HpyF3I CTNAG 8 cut(s) 100, 128, 245, 536, 594, 903, 958, 1185
HpySE526I ACGT 3 cut(s) 401, 757, 1261
Hsp92II CATG 5 cut(s) 209, 316, 902, 911, 1273
HspAI GCGC 3 cut(s) 140, 142, 166
Kpn2I TCCGGA 1 cut(s) 105
Kzo9I GATC 3 cut(s) 64, 889, 1179
LmnI GCTCC 6 cut(s) 34, 118, 228, 463, 606, 1280
Lsp1109I GCAGC 6 cut(s) 131, 229, 232, 361, 610, 1213
LweI GCATC 2 cut(s) 703, 1111
MabI ACCWGGT 1 cut(s) 939
MaeI CTAG 3 cut(s) 384, 555, 1007
MaeII ACGT 3 cut(s) 401, 757, 1261
MaeIII GTNAC 6 cut(s) 201, 378, 607, 745, 1076, 1252
MalI GATC 3 cut(s) 66, 891, 1181
MboI GATC 3 cut(s) 64, 889, 1179
MboII GAAGA 4 cut(s) 59, 320, 722, 963
MhlI GDGCHC 3 cut(s) 39, 123, 232
MluCI AATT 8 cut(s) 154, 209, 293, 495, 630, 819, 1131, 1166
MlyI GAGTC 3 cut(s) 604, 790, 1013
MmeI TCCRAC 4 cut(s) 523, 758, 796, 894
MroI TCCGGA 1 cut(s) 105
MseI TTAA 7 cut(s) 198, 212, 372, 1130, 1230, 1275, 1300
MslI CAYNNNNRTG 1 cut(s) 699
MspA1I CMGCKG 1 cut(s) 352
MspCI CTTAAG 2 cut(s) 197, 1274
MspI CCGG 2 cut(s) 106, 226
MspR9I CCNGG 6 cut(s) 227, 839, 941, 965, 993, 1118
MvaI CCWGG 5 cut(s) 839, 941, 965, 993, 1118
MvnI CGCG 1 cut(s) 142
MwoI GCNNNNNNNGC 4 cut(s) 589, 598, 783, 866
NciI CCSGG 1 cut(s) 227
NdeII GATC 3 cut(s) 64, 889, 1179
NlaIII CATG 5 cut(s) 209, 316, 902, 911, 1273
NlaIV GGNNCC 4 cut(s) 36, 120, 933, 1095
NmuCI GTSAC 5 cut(s) 201, 378, 607, 745, 1076
NspI RCATGY 2 cut(s) 316, 911
PaeR7I CTCGAG 2 cut(s) 778, 801
PauI GCGCGC 1 cut(s) 140
PceI AGGCCT 1 cut(s) 842
PcsI WCGNNNNNNNCGW 2 cut(s) 335, 808
PfeI GAWTC 1 cut(s) 684
PkrI GCNGC 6 cut(s) 146, 219, 222, 351, 600, 1203
PleI GAGTC 3 cut(s) 604, 789, 1013
PmaCI CACGTG 1 cut(s) 758
PmlI CACGTG 1 cut(s) 758
PpsI GAGTC 3 cut(s) 604, 789, 1013
Ppu21I YACGTR 2 cut(s) 402, 758
PshBI ATTAAT 1 cut(s) 212
Psp6I CCWGG 5 cut(s) 837, 939, 963, 991, 1116
PspCI CACGTG 1 cut(s) 758
PspEI GGTNACC 1 cut(s) 378
PspGI CCWGG 5 cut(s) 837, 939, 963, 991, 1116
PspN4I GGNNCC 4 cut(s) 36, 120, 933, 1095
PspPI GGNCC 3 cut(s) 237, 532, 574
PspXI VCTCGAGB 2 cut(s) 778, 801
PsrI GAACNNNNNNTAC 2 cut(s) 711, 743
PstI CTGCAG 1 cut(s) 713
PteI GCGCGC 1 cut(s) 140
RsaI GTAC 5 cut(s) 404, 526, 561, 849, 1035
RsaNI GTAC 5 cut(s) 403, 525, 560, 848, 1034
RseI CAYNNNNRTG 1 cut(s) 699
SaqAI TTAA 7 cut(s) 198, 212, 372, 1130, 1230, 1275, 1300
SatI GCNGC 6 cut(s) 145, 218, 221, 350, 599, 1202
Sau3AI GATC 3 cut(s) 64, 889, 1179
Sau96I GGNCC 3 cut(s) 237, 532, 574
SbfI CCTGCAGG 1 cut(s) 713
SchI GAGTC 3 cut(s) 604, 790, 1013
ScrFI CCNGG 6 cut(s) 227, 839, 941, 965, 993, 1118
SdaI CCTGCAGG 1 cut(s) 713
SduI GDGCHC 3 cut(s) 39, 123, 232
SexAI ACCWGGT 1 cut(s) 939
SfaNI GCATC 2 cut(s) 703, 1111
SfcI CTRYAG 2 cut(s) 709, 1062
Sfr274I CTCGAG 2 cut(s) 778, 801
SinI GGWCC 2 cut(s) 532, 574
SlaI CTCGAG 2 cut(s) 778, 801
SmiMI CAYNNNNRTG 1 cut(s) 699
SmlI CTYRAG 4 cut(s) 197, 778, 801, 1274
SmoI CTYRAG 4 cut(s) 197, 778, 801, 1274
SnaBI TACGTA 1 cut(s) 402
Sse8387I CCTGCAGG 1 cut(s) 713
Sse9I AATT 8 cut(s) 154, 209, 293, 495, 630, 819, 1131, 1166
SseBI AGGCCT 1 cut(s) 842
SsiI CCGC 2 cut(s) 352, 869
SspMI CTAG 3 cut(s) 384, 555, 1007
StuI AGGCCT 1 cut(s) 842
StyD4I CCNGG 6 cut(s) 225, 837, 939, 963, 991, 1116
StyI CCWWGG 2 cut(s) 46, 268
TaaI ACNGT 1 cut(s) 529
TaiI ACGT 3 cut(s) 404, 760, 1264
TaqI TCGA 5 cut(s) 182, 338, 779, 802, 978
TasI AATT 8 cut(s) 154, 209, 293, 495, 630, 819, 1131, 1166
TfiI GAWTC 1 cut(s) 684
Tru1I TTAA 7 cut(s) 198, 212, 372, 1130, 1230, 1275, 1300
Tru9I TTAA 7 cut(s) 198, 212, 372, 1130, 1230, 1275, 1300
TscAI CASTG 1 cut(s) 1182
TseFI GTSAC 5 cut(s) 201, 378, 607, 745, 1076
TseI GCWGC 6 cut(s) 144, 217, 220, 349, 598, 1201
Tsp45I GTSAC 5 cut(s) 201, 378, 607, 745, 1076
TspDTI ATGAA 4 cut(s) 17, 222, 887, 1258
TspGWI ACGGA 3 cut(s) 593, 764, 805
TspRI CASTG 1 cut(s) 1182
Vha464I CTTAAG 2 cut(s) 197, 1274
VpaK11BI GGWCC 2 cut(s) 532, 574
VspI ATTAAT 1 cut(s) 212
XagI CCTNNNNNAGG 1 cut(s) 581
XapI RAATTY 1 cut(s) 1166
XceI RCATGY 2 cut(s) 316, 911
XhoI CTCGAG 2 cut(s) 778, 801
XspI CTAG 3 cut(s) 384, 555, 1007
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.