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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 448 |
| AfaI | GTAC | 1 cut(s) | 67 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 360 |
| AgsI | TTSAA | 3 cut(s) | 59, 155, 463 |
| AluBI | AGCT | 1 cut(s) | 283 |
| AluI | AGCT | 1 cut(s) | 283 |
| AoxI | GGCC | 2 cut(s) | 363, 438 |
| ApoI | RAATTY | 1 cut(s) | 448 |
| AseI | ATTAAT | 1 cut(s) | 21 |
| AspS9I | GGNCC | 1 cut(s) | 363 |
| AsuHPI | GGTGA | 1 cut(s) | 387 |
| BaeGI | GKGCMC | 1 cut(s) | 475 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 234, 267 |
| BclI | TGATCA | 2 cut(s) | 187, 490 |
| BfaI | CTAG | 2 cut(s) | 183, 455 |
| BmgT120I | GGNCC | 1 cut(s) | 363 |
| BmiI | GGNNCC | 2 cut(s) | 84, 364 |
| BmrI | ACTGGG | 1 cut(s) | 186 |
| BmuI | ACTGGG | 1 cut(s) | 186 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 308, 340 |
| BsaJI | CCNNGG | 2 cut(s) | 223, 358 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 360 |
| Bse118I | RCCGGY | 1 cut(s) | 440 |
| Bse1I | ACTGG | 1 cut(s) | 181 |
| BseDI | CCNNGG | 2 cut(s) | 223, 358 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 360 |
| BseMII | CTCAG | 2 cut(s) | 270, 381 |
| BseNI | ACTGG | 1 cut(s) | 181 |
| BseRI | GAGGAG | 2 cut(s) | 440, 443 |
| BseSI | GKGCMC | 1 cut(s) | 475 |
| BshFI | GGCC | 2 cut(s) | 365, 440 |
| BsiSI | CCGG | 1 cut(s) | 441 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 360 |
| BsnI | GGCC | 2 cut(s) | 365, 440 |
| Bsp1286I | GDGCHC | 1 cut(s) | 475 |
| Bsp143I | GATC | 2 cut(s) | 187, 490 |
| BspANI | GGCC | 2 cut(s) | 365, 440 |
| BspCNI | CTCAG | 2 cut(s) | 271, 380 |
| BspLI | GGNNCC | 2 cut(s) | 84, 364 |
| BsrFI | RCCGGY | 1 cut(s) | 440 |
| BsrI | ACTGG | 1 cut(s) | 181 |
| BssAI | RCCGGY | 1 cut(s) | 440 |
| BssECI | CCNNGG | 2 cut(s) | 223, 358 |
| BssMI | GATC | 2 cut(s) | 187, 490 |
| BssT1I | CCWWGG | 2 cut(s) | 223, 358 |
| BstC8I | GCNNGC | 1 cut(s) | 442 |
| BstDEI | CTNAG | 4 cut(s) | 197, 215, 279, 367 |
| BstKTI | GATC | 2 cut(s) | 190, 493 |
| BstMBI | GATC | 2 cut(s) | 187, 490 |
| BstSLI | GKGCMC | 1 cut(s) | 475 |
| BsuRI | GGCC | 2 cut(s) | 365, 440 |
| Cac8I | GCNNGC | 1 cut(s) | 442 |
| Cfr10I | RCCGGY | 1 cut(s) | 440 |
| Cfr13I | GGNCC | 1 cut(s) | 363 |
| CseI | GACGC | 1 cut(s) | 131 |
| Csp6I | GTAC | 1 cut(s) | 66 |
| CviAII | CATG | 2 cut(s) | 92, 408 |
| CviJI | RGCY | 7 cut(s) | 85, 182, 194, 283, 365, 440, 459 |
| CviKI_1 | RGCY | 7 cut(s) | 85, 182, 194, 283, 365, 440, 459 |
| CviQI | GTAC | 1 cut(s) | 66 |
| DdeI | CTNAG | 4 cut(s) | 197, 215, 279, 367 |
| DpnI | GATC | 2 cut(s) | 189, 492 |
| DpnII | GATC | 2 cut(s) | 187, 490 |
| Eco130I | CCWWGG | 2 cut(s) | 223, 358 |
| Eco32I | GATATC | 1 cut(s) | 418 |
| EcoO109I | RGGNCCY | 1 cut(s) | 363 |
| EcoRI | GAATTC | 1 cut(s) | 448 |
| EcoRV | GATATC | 1 cut(s) | 418 |
| EcoT14I | CCWWGG | 2 cut(s) | 223, 358 |
| ErhI | CCWWGG | 2 cut(s) | 223, 358 |
| FaeI | CATG | 2 cut(s) | 95, 411 |
| FaiI | YATR | 8 cut(s) | 80, 93, 203, 260, 262, 287, 375, 409 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 491 |
| FatI | CATG | 2 cut(s) | 91, 407 |
| FbaI | TGATCA | 2 cut(s) | 187, 490 |
| FspBI | CTAG | 2 cut(s) | 183, 455 |
| HaeIII | GGCC | 2 cut(s) | 365, 440 |
| HapII | CCGG | 1 cut(s) | 441 |
| HgaI | GACGC | 1 cut(s) | 131 |
| Hin1II | CATG | 2 cut(s) | 95, 411 |
| HinfI | GANTC | 2 cut(s) | 107, 323 |
| HpaII | CCGG | 1 cut(s) | 441 |
| HphI | GGTGA | 1 cut(s) | 387 |
| Hpy166II | GTNNAC | 1 cut(s) | 253 |
| Hpy188I | TCNGA | 2 cut(s) | 355, 370 |
| Hpy188III | TCNNGA | 2 cut(s) | 155, 494 |
| Hpy8I | GTNNAC | 1 cut(s) | 253 |
| HpyCH4V | TGCA | 2 cut(s) | 233, 275 |
| HpyF3I | CTNAG | 4 cut(s) | 197, 215, 279, 367 |
| Hsp92II | CATG | 2 cut(s) | 95, 411 |
| KroI | GCCGGC | 1 cut(s) | 440 |
| KroNI | GCCGGC | 1 cut(s) | 442 |
| Ksp22I | TGATCA | 2 cut(s) | 187, 490 |
| Kzo9I | GATC | 2 cut(s) | 187, 490 |
| LmnI | GCTCC | 2 cut(s) | 82, 430 |
| LpnPI | CCDG | 5 cut(s) | 23, 162, 176, 454, 479 |
| MaeI | CTAG | 2 cut(s) | 183, 455 |
| MaeIII | GTNAC | 5 cut(s) | 97, 133, 218, 347, 389 |
| MalI | GATC | 2 cut(s) | 189, 492 |
| MboI | GATC | 2 cut(s) | 187, 490 |
| MboII | GAAGA | 2 cut(s) | 278, 511 |
| MhlI | GDGCHC | 1 cut(s) | 475 |
| MluCI | AATT | 6 cut(s) | 61, 112, 126, 294, 448, 480 |
| MlyI | GAGTC | 1 cut(s) | 317 |
| MmeI | TCCRAC | 1 cut(s) | 378 |
| MnlI | CCTC | 5 cut(s) | 295, 376, 418, 421, 430 |
| MroNI | GCCGGC | 1 cut(s) | 440 |
| MseI | TTAA | 3 cut(s) | 21, 312, 336 |
| MspI | CCGG | 1 cut(s) | 441 |
| NaeI | GCCGGC | 1 cut(s) | 442 |
| NdeII | GATC | 2 cut(s) | 187, 490 |
| NgoMIV | GCCGGC | 1 cut(s) | 440 |
| NlaIII | CATG | 2 cut(s) | 95, 411 |
| NlaIV | GGNNCC | 2 cut(s) | 84, 364 |
| PdiI | GCCGGC | 1 cut(s) | 442 |
| PfeI | GAWTC | 1 cut(s) | 107 |
| PflFI | GACNNNGTC | 1 cut(s) | 326 |
| PleI | GAGTC | 1 cut(s) | 317 |
| PpsI | GAGTC | 1 cut(s) | 317 |
| PshBI | ATTAAT | 1 cut(s) | 21 |
| PspN4I | GGNNCC | 2 cut(s) | 84, 364 |
| PspPI | GGNCC | 1 cut(s) | 363 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 135, 167 |
| PsyI | GACNNNGTC | 1 cut(s) | 326 |
| RsaI | GTAC | 1 cut(s) | 67 |
| RsaNI | GTAC | 1 cut(s) | 66 |
| SaqAI | TTAA | 3 cut(s) | 21, 312, 336 |
| Sau3AI | GATC | 2 cut(s) | 187, 490 |
| Sau96I | GGNCC | 1 cut(s) | 363 |
| SchI | GAGTC | 1 cut(s) | 317 |
| SduI | GDGCHC | 1 cut(s) | 475 |
| SetI | ASST | 6 cut(s) | 42, 225, 248, 285, 306, 400 |
| Sse9I | AATT | 6 cut(s) | 61, 112, 126, 294, 448, 480 |
| SspI | AATATT | 1 cut(s) | 334 |
| SspMI | CTAG | 2 cut(s) | 183, 455 |
| StyI | CCWWGG | 2 cut(s) | 223, 358 |
| TaqII | GACCGA | 1 cut(s) | 393 |
| TasI | AATT | 6 cut(s) | 61, 112, 126, 294, 448, 480 |
| TfiI | GAWTC | 1 cut(s) | 107 |
| Tru1I | TTAA | 3 cut(s) | 21, 312, 336 |
| Tru9I | TTAA | 3 cut(s) | 21, 312, 336 |
| TspGWI | ACGGA | 1 cut(s) | 83 |
| Tth111I | GACNNNGTC | 1 cut(s) | 326 |
| VspI | ATTAAT | 1 cut(s) | 21 |
| XapI | RAATTY | 1 cut(s) | 448 |
| XspI | CTAG | 2 cut(s) | 183, 455 |