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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 232 |
| AccI | GTMKAC | 2 cut(s) | 198, 614 |
| AccII | CGCG | 1 cut(s) | 519 |
| AciI | CCGC | 3 cut(s) | 8, 215, 476 |
| AclWI | GGATC | 2 cut(s) | 593, 606 |
| AcsI | RAATTY | 3 cut(s) | 604, 638, 764 |
| AcuI | CTGAAG | 1 cut(s) | 239 |
| AfaI | GTAC | 3 cut(s) | 310, 498, 550 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 232, 359, 466, 748 |
| AgsI | TTSAA | 1 cut(s) | 161 |
| AjnI | CCWGG | 3 cut(s) | 241, 502, 594 |
| AluBI | AGCT | 3 cut(s) | 473, 673, 737 |
| AluI | AGCT | 3 cut(s) | 473, 673, 737 |
| Alw21I | GWGCWC | 1 cut(s) | 739 |
| Alw26I | GTCTC | 3 cut(s) | 521, 563, 658 |
| AlwI | GGATC | 2 cut(s) | 593, 606 |
| AoxI | GGCC | 1 cut(s) | 222 |
| ApeKI | GCWGC | 3 cut(s) | 165, 473, 712 |
| ApoI | RAATTY | 3 cut(s) | 604, 638, 764 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 596, 628 |
| AspLEI | GCGC | 2 cut(s) | 519, 717 |
| AspS9I | GGNCC | 1 cut(s) | 223 |
| AsuC2I | CCSGG | 1 cut(s) | 729 |
| AsuHPI | GGTGA | 1 cut(s) | 266 |
| BamHI | GGATCC | 1 cut(s) | 598 |
| BanII | GRGCYC | 1 cut(s) | 739 |
| BbsI | GAAGAC | 2 cut(s) | 310, 551 |
| Bbv12I | GWGCWC | 1 cut(s) | 739 |
| BbvCI | CCTCAGC | 1 cut(s) | 15 |
| BbvI | GCAGC | 3 cut(s) | 152, 460, 724 |
| BccI | CCATC | 1 cut(s) | 468 |
| BciT130I | CCWGG | 3 cut(s) | 243, 504, 596 |
| BcnI | CCSGG | 1 cut(s) | 729 |
| BcoDI | GTCTC | 3 cut(s) | 521, 563, 658 |
| BglII | AGATCT | 1 cut(s) | 129 |
| BisI | GCNGC | 4 cut(s) | 166, 474, 477, 713 |
| BlpI | GCTNAGC | 1 cut(s) | 237 |
| BlsI | GCNGC | 4 cut(s) | 167, 475, 478, 714 |
| BmcAI | AGTACT | 1 cut(s) | 550 |
| Bme1390I | CCNGG | 4 cut(s) | 243, 504, 596, 729 |
| BmgT120I | GGNCC | 1 cut(s) | 223 |
| BmiI | GGNNCC | 2 cut(s) | 414, 600 |
| BmrFI | CCNGG | 4 cut(s) | 243, 504, 596, 729 |
| BmsI | GCATC | 1 cut(s) | 415 |
| BpiI | GAAGAC | 2 cut(s) | 310, 551 |
| Bpu10I | CCTNAGC | 1 cut(s) | 15 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 237 |
| BpuMI | CCSGG | 1 cut(s) | 729 |
| BsaJI | CCNNGG | 1 cut(s) | 594 |
| BsaWI | WCCGGW | 1 cut(s) | 64 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 232, 359, 466, 748 |
| Bse3DI | GCAATG | 1 cut(s) | 439 |
| BseBI | CCWGG | 3 cut(s) | 243, 504, 596 |
| BseDI | CCNNGG | 1 cut(s) | 594 |
| BseGI | GGATG | 1 cut(s) | 402 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 232, 359, 466, 748 |
| BseMI | GCAATG | 1 cut(s) | 439 |
| BseMII | CTCAG | 6 cut(s) | 29, 147, 222, 228, 270, 383 |
| BseRI | GAGGAG | 2 cut(s) | 152, 644 |
| BseXI | GCAGC | 3 cut(s) | 152, 460, 724 |
| Bsh1236I | CGCG | 1 cut(s) | 519 |
| BshFI | GGCC | 1 cut(s) | 224 |
| BsiHKAI | GWGCWC | 1 cut(s) | 739 |
| BsiSI | CCGG | 2 cut(s) | 65, 728 |
| BslFI | GGGAC | 1 cut(s) | 577 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 232, 359, 466, 748 |
| BsmAI | GTCTC | 3 cut(s) | 521, 563, 658 |
| BsmFI | GGGAC | 1 cut(s) | 577 |
| BsnI | GGCC | 1 cut(s) | 224 |
| Bsp1286I | GDGCHC | 1 cut(s) | 739 |
| Bsp143I | GATC | 2 cut(s) | 129, 598 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 237 |
| BspACI | CCGC | 3 cut(s) | 8, 215, 476 |
| BspANI | GGCC | 1 cut(s) | 224 |
| BspCNI | CTCAG | 6 cut(s) | 28, 146, 221, 229, 271, 382 |
| BspFNI | CGCG | 1 cut(s) | 519 |
| BspHI | TCATGA | 1 cut(s) | 82 |
| BspLI | GGNNCC | 2 cut(s) | 414, 600 |
| BspPI | GGATC | 2 cut(s) | 593, 606 |
| BsrDI | GCAATG | 1 cut(s) | 439 |
| BssECI | CCNNGG | 1 cut(s) | 594 |
| BssMI | GATC | 2 cut(s) | 129, 598 |
| Bst2UI | CCWGG | 3 cut(s) | 243, 504, 596 |
| Bst4CI | ACNGT | 2 cut(s) | 99, 113 |
| BstC8I | GCNNGC | 1 cut(s) | 430 |
| BstDEI | CTNAG | 8 cut(s) | 15, 133, 208, 237, 279, 369, 573, 696 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 357, 746 |
| BstF5I | GGATG | 1 cut(s) | 402 |
| BstFNI | CGCG | 1 cut(s) | 519 |
| BstHHI | GCGC | 2 cut(s) | 519, 717 |
| BstKTI | GATC | 2 cut(s) | 132, 601 |
| BstMAI | GTCTC | 3 cut(s) | 521, 563, 658 |
| BstMBI | GATC | 2 cut(s) | 129, 598 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 16, 289, 298, 434 |
| BstNI | CCWGG | 3 cut(s) | 243, 504, 596 |
| BstSCI | CCNGG | 4 cut(s) | 241, 502, 594, 727 |
| BstUI | CGCG | 1 cut(s) | 519 |
| BstV1I | GCAGC | 3 cut(s) | 152, 460, 724 |
| BstV2I | GAAGAC | 2 cut(s) | 310, 551 |
| BstX2I | RGATCY | 2 cut(s) | 129, 598 |
| BstYI | RGATCY | 2 cut(s) | 129, 598 |
| BsuRI | GGCC | 1 cut(s) | 224 |
| BtsCI | GGATG | 1 cut(s) | 402 |
| Cac8I | GCNNGC | 1 cut(s) | 430 |
| CciI | TCATGA | 1 cut(s) | 82 |
| CfoI | GCGC | 2 cut(s) | 519, 717 |
| Cfr13I | GGNCC | 1 cut(s) | 223 |
| Csp6I | GTAC | 3 cut(s) | 309, 497, 549 |
| CviAII | CATG | 3 cut(s) | 83, 188, 227 |
| CviQI | GTAC | 3 cut(s) | 309, 497, 549 |
| DdeI | CTNAG | 8 cut(s) | 15, 133, 208, 237, 279, 369, 573, 696 |
| DpnI | GATC | 2 cut(s) | 131, 600 |
| DpnII | GATC | 2 cut(s) | 129, 598 |
| Ecl136II | GAGCTC | 1 cut(s) | 737 |
| Eco24I | GRGCYC | 1 cut(s) | 739 |
| Eco53kI | GAGCTC | 1 cut(s) | 737 |
| Eco57I | CTGAAG | 1 cut(s) | 239 |
| EcoICRI | GAGCTC | 1 cut(s) | 737 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 357, 746 |
| EcoRII | CCWGG | 3 cut(s) | 241, 502, 594 |
| EcoT38I | GRGCYC | 1 cut(s) | 739 |
| FaeI | CATG | 3 cut(s) | 86, 191, 230 |
| FaiI | YATR | 6 cut(s) | 53, 84, 189, 228, 252, 762 |
| FaqI | GGGAC | 1 cut(s) | 577 |
| FatI | CATG | 3 cut(s) | 82, 187, 226 |
| FblI | GTMKAC | 2 cut(s) | 198, 614 |
| Fnu4HI | GCNGC | 4 cut(s) | 166, 474, 477, 713 |
| FokI | GGATG | 1 cut(s) | 389 |
| FriOI | GRGCYC | 1 cut(s) | 739 |
| Fsp4HI | GCNGC | 4 cut(s) | 166, 474, 477, 713 |
| GlaI | GCGC | 2 cut(s) | 518, 716 |
| GluI | GCNGC | 4 cut(s) | 166, 474, 477, 713 |
| HaeIII | GGCC | 1 cut(s) | 224 |
| HapII | CCGG | 2 cut(s) | 65, 728 |
| HhaI | GCGC | 2 cut(s) | 519, 717 |
| Hin1II | CATG | 3 cut(s) | 86, 191, 230 |
| Hin6I | GCGC | 2 cut(s) | 517, 715 |
| HinP1I | GCGC | 2 cut(s) | 517, 715 |
| HinfI | GANTC | 3 cut(s) | 59, 140, 611 |
| HpaII | CCGG | 2 cut(s) | 65, 728 |
| HphI | GGTGA | 1 cut(s) | 266 |
| Hpy166II | GTNNAC | 5 cut(s) | 155, 199, 497, 615, 692 |
| Hpy188I | TCNGA | 4 cut(s) | 129, 136, 211, 490 |
| Hpy188III | TCNNGA | 4 cut(s) | 83, 353, 511, 742 |
| Hpy8I | GTNNAC | 5 cut(s) | 155, 199, 497, 615, 692 |
| Hpy99I | CGWCG | 1 cut(s) | 327 |
| HpyAV | CCTTC | 3 cut(s) | 158, 214, 371 |
| HpyCH4III | ACNGT | 2 cut(s) | 99, 113 |
| HpyCH4IV | ACGT | 2 cut(s) | 307, 357 |
| HpyCH4V | TGCA | 2 cut(s) | 77, 168 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 16, 289, 298, 434 |
| HpyF3I | CTNAG | 8 cut(s) | 15, 133, 208, 237, 279, 369, 573, 696 |
| HpySE526I | ACGT | 2 cut(s) | 307, 357 |
| Hsp92II | CATG | 3 cut(s) | 86, 191, 230 |
| HspAI | GCGC | 2 cut(s) | 517, 715 |
| Kzo9I | GATC | 2 cut(s) | 129, 598 |
| LmnI | GCTCC | 2 cut(s) | 709, 752 |
| Lsp1109I | GCAGC | 3 cut(s) | 152, 460, 724 |
| LweI | GCATC | 1 cut(s) | 415 |
| MaeII | ACGT | 2 cut(s) | 307, 357 |
| MalI | GATC | 2 cut(s) | 131, 600 |
| MboI | GATC | 2 cut(s) | 129, 598 |
| MboII | GAAGA | 4 cut(s) | 315, 474, 534, 551 |
| MflI | RGATCY | 2 cut(s) | 129, 598 |
| MhlI | GDGCHC | 1 cut(s) | 739 |
| MluCI | AATT | 5 cut(s) | 78, 443, 604, 638, 764 |
| MlyI | GAGTC | 2 cut(s) | 149, 620 |
| MmeI | TCCRAC | 2 cut(s) | 354, 420 |
| MseI | TTAA | 1 cut(s) | 69 |
| MslI | CAYNNNNRTG | 1 cut(s) | 407 |
| MspA1I | CMGCKG | 1 cut(s) | 217 |
| MspI | CCGG | 2 cut(s) | 65, 728 |
| MspR9I | CCNGG | 4 cut(s) | 243, 504, 596, 729 |
| MvaI | CCWGG | 3 cut(s) | 243, 504, 596 |
| MvnI | CGCG | 1 cut(s) | 519 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 16, 289, 298, 434 |
| NciI | CCSGG | 1 cut(s) | 729 |
| NdeII | GATC | 2 cut(s) | 129, 598 |
| NlaIII | CATG | 3 cut(s) | 86, 191, 230 |
| NlaIV | GGNNCC | 2 cut(s) | 414, 600 |
| PagI | TCATGA | 1 cut(s) | 82 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 328 |
| PfeI | GAWTC | 1 cut(s) | 59 |
| PflFI | GACNNNGTC | 1 cut(s) | 574 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 232 |
| PkrI | GCNGC | 4 cut(s) | 167, 475, 478, 714 |
| PleI | GAGTC | 2 cut(s) | 148, 619 |
| PpsI | GAGTC | 2 cut(s) | 148, 619 |
| Psp124BI | GAGCTC | 1 cut(s) | 739 |
| Psp6I | CCWGG | 3 cut(s) | 241, 502, 594 |
| PspGI | CCWGG | 3 cut(s) | 241, 502, 594 |
| PspN4I | GGNNCC | 2 cut(s) | 414, 600 |
| PspPI | GGNCC | 1 cut(s) | 223 |
| PsuI | RGATCY | 2 cut(s) | 129, 598 |
| PsyI | GACNNNGTC | 1 cut(s) | 574 |
| RsaI | GTAC | 3 cut(s) | 310, 498, 550 |
| RsaNI | GTAC | 3 cut(s) | 309, 497, 549 |
| RseI | CAYNNNNRTG | 1 cut(s) | 407 |
| SacI | GAGCTC | 1 cut(s) | 739 |
| SaqAI | TTAA | 1 cut(s) | 69 |
| SatI | GCNGC | 4 cut(s) | 166, 474, 477, 713 |
| Sau3AI | GATC | 2 cut(s) | 129, 598 |
| Sau96I | GGNCC | 1 cut(s) | 223 |
| ScaI | AGTACT | 1 cut(s) | 550 |
| SchI | GAGTC | 2 cut(s) | 149, 620 |
| ScrFI | CCNGG | 4 cut(s) | 243, 504, 596, 729 |
| SduI | GDGCHC | 1 cut(s) | 739 |
| SfaNI | GCATC | 1 cut(s) | 415 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 407 |
| Sse9I | AATT | 5 cut(s) | 78, 443, 604, 638, 764 |
| SsiI | CCGC | 3 cut(s) | 8, 215, 476 |
| SstI | GAGCTC | 1 cut(s) | 739 |
| StyD4I | CCNGG | 4 cut(s) | 241, 502, 594, 727 |
| TaaI | ACNGT | 2 cut(s) | 99, 113 |
| TaiI | ACGT | 2 cut(s) | 310, 360 |
| TaqI | TCGA | 3 cut(s) | 331, 545, 733 |
| TasI | AATT | 5 cut(s) | 78, 443, 604, 638, 764 |
| TatI | WGTACW | 1 cut(s) | 548 |
| TauI | GCSGC | 1 cut(s) | 479 |
| TfiI | GAWTC | 1 cut(s) | 59 |
| Tru1I | TTAA | 1 cut(s) | 69 |
| Tru9I | TTAA | 1 cut(s) | 69 |
| TseI | GCWGC | 3 cut(s) | 165, 473, 712 |
| TspDTI | ATGAA | 1 cut(s) | 71 |
| TspGWI | ACGGA | 1 cut(s) | 548 |
| Tth111I | GACNNNGTC | 1 cut(s) | 574 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 232 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 357, 746 |
| XapI | RAATTY | 3 cut(s) | 604, 638, 764 |
| XmiI | GTMKAC | 2 cut(s) | 198, 614 |
| ZrmI | AGTACT | 1 cut(s) | 550 |