RchiOBHm_Chr3g0453631

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000044
Physical Location & Seq
Forward (+)
4013173 .. 4015537
2365 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42071

Sequence Viewer

Length: 1602 bp
ATGGCTGTTTGCCCCTGGGCATTCTTGGGAGGCATAGACACGGCCTCTGCGCCTCCTCCAACAGCCCCAAAATCACGCACTTTTGCATCTATCCTCGCTAACTCAACAGAGGCTGCTATATCTCTCAGCCAACTACCATCTCCGGTTGTTCGTGGGGATAAAATTTATGTCAAGATCAATGAATCCTTATACCAGGAGCAATTAAAGCAATTCAAAACCAATCTTATTGGTCGTCTTCTTCTTCGTAAGGGTTCTAAACCTCTTAAGGCTGATGCCCTAAAAGGGCTGCTTGCTGCTCTCTGGCAGCCCTCAAAGCCATGGCGTCTGGTTCCTCTCGGTAAAGGCTACTTTGACATTCATTTTGCCACTGAAGAGGATCTCCGTAGGGTATGGAGTGGAGGTACTTGTACTCTTCCTGATGGAATTTTTCGCCTAACTCAGTGGAAACCGGACTTTGTACCAGGAGATACCTTTCCTCAAACTCATGCTCAAATTTGGATTAGGATTTATGGGCTGAGTCAAGATTATTGGCACCAACAACATCTTATGGAAATCGCTCGGGGTGTCGGAACTCCATTGCAAATTGACAAAGCCACAAGGGAAAGACAATTCGGGTACTTTGCTCGAGTCTTGGTTGATGTGGATCTTGCAGGGGACTTACCACCTTCTTTGATGGTTGAGCGGGAAACTCATTGTTTTCCGATTGAAGTGGTCTATGAGAATGTGTGTACTCATTGCGGGAAGGTTGGCCATATGGTTGATCAATGCAGGTTCTTGAAGAGCTCTAACAATGAGCAAAATGCTCAAGAACATAAGGTTGTTAAAAAGCCTTCTCGCATTGGGCGTCAAGAGTATCGTCCCAAGACGGCTGTAAACAATGTCTCTGAGCAAAATTTGGACACTATCCCTCAGGTGCAACACTCCCCTGAGGTTGCAAACCATGATCAGATTACTAAATTTGCAGAAGATGTTCTCACTGAGGCCGTTGACCAGGAACTGGATCGTATTGCTGATCTGGTCATTAATGAACCCATTATCAACAGGAAGCCTGAAAGTTGTAAAGGCAACATGTCTCCTCTTATCAACAAGAATAAATTTGCCATCCTTGCAAGCAAGGAAATTGAAGCAGTGGTTGACATTATTCCTAAGGAATTTGCTCAAGTTGTTGGAACAACTACTTTGGAGGTCCCTACGGTTCATATTACTGATGAGGATGATGAGGATGAGGAAGTTGACAGTGATAATGAAATGTGTGATGAAGAGGTGAACTCCAATATGGAGCAAAAGACTTACAGCCCCCAGCCAACCAATTCTCCACAGAGTGGTCAGAATTGGCATGATATGGTGGAAGAGGAAAATCTGATTGATCTGGTTGATTTACCTACGGGTGTTCCCCCGGGATTTGAACATGTTGCAACTTTAGCCAAGGATGTCGCATTAATTACTGGTCAAGGAGTTAATGAAAATACTGAAAATGGTTTCACACCGGTTATCTCCAGGTCTCAACAGAAAAAACAAAGACGACAAGCTACCCAAGCTCTTGATCGTGAAACTCCTTACCCAAAGAGGGACAGAACAAAGAATAAAAAGTACAATCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

533

Amino Acids

59.98

Weight (kDa)

5.51

Isoelectric Point (pI)

45.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 70 - 154 9.4e-08 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000044)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07760 AT5G28823
fragaria_vesca FvH4_1g13572 FvH4_2g03281 FvH4_2g04691 FvH4_2g08332 FvH4_2g08333 FvH4_2g15313 FvH4_2g26101 FvH4_2g29541 FvH4_3g06911 FvH4_3g34351 FvH4_3g43733 FvH4_4g02432 FvH4_4g05601 FvH4_4g08213 FvH4_4g09961 FvH4_4g10131 FvH4_4g20001 FvH4_4g20002 FvH4_5g01051 FvH4_5g01401 FvH4_5g27943 FvH4_6g09220 FvH4_6g17383 FvH4_6g35491 FvH4_6g46421 FvH4_7g04151 FvH4_7g13962 FvH4_7g18611 FvH4_7g19491 FvH4_7g19511 FvH4_7g26562
malus_domestica MD06G1221600.v1.1
pyrus_communis pycom10g21150
rosa_chinensis RchiOBHm_Chr1g0337571 RchiOBHm_Chr2g0168771 RchiOBHm_Chr3g0453631 RchiOBHm_Chr6g0278581
rosa_laevigata RLG00000001899 RLG00000001925 RLG00000002026 RLG00000003410 RLG00000003767 RLG00000004304 RLG00000004473 RLG00000004677 RLG00000006856 RLG00000007994 RLG00000009888 RLG00000011627 RLG00000012174 RLG00000012217 RLG00000013118 RLG00000013736 RLG00000014194 RLG00000014251 RLG00000015011 RLG00000015057 RLG00000015235 RLG00000017416 RLG00000018052 RLG00000018537 RLG00000019968 RLG00000020096 RLG00000020263 RLG00000022606 RLG00000023119 RLG00000028111 RLG00000029686 RLG00000030126 RLG00000031124 RLG00000031236 RLG00000032766 RLG00000033171 RLG00000033548 RLG00000033987 RLG00000034062 RLG00000035115 RLG00000035863
rosa_multiflora Rmu_co8036712.1_g000001 Rmu_co8080248.1_g000001 Rmu_co8208334.1_g000001 Rmu_co8253451.1_g000001 Rmu_co8393241.1_g000001 Rmu_co8522225.1_g000005 Rmu_sc0000060.1_g000030 Rmu_sc0000060.1_g000031 Rmu_sc0000060.1_g000032 Rmu_sc0000090.1_g000008 Rmu_sc0000149.1_g000051 Rmu_sc0000149.1_g000058 Rmu_sc0000309.1_g000050 Rmu_sc0000370.1_g000022 Rmu_sc0000370.1_g000023 Rmu_sc0000370.1_g000024 Rmu_sc0000418.1_g000018 Rmu_sc0000427.1_g000014 Rmu_sc0000427.1_g000015 Rmu_sc0000434.1_g000008 Rmu_sc0000487.1_g000038 Rmu_sc0000487.1_g000039 Rmu_sc0000569.1_g000029 Rmu_sc0000580.1_g000097 Rmu_sc0000595.1_g000068 Rmu_sc0000607.1_g000027 Rmu_sc0000738.1_g000004 Rmu_sc0000758.1_g000001 Rmu_sc0000758.1_g000002 Rmu_sc0000870.1_g000019 Rmu_sc0000924.1_g000040 Rmu_sc0000924.1_g000041 Rmu_sc0000999.1_g000037 Rmu_sc0001001.1_g000001 Rmu_sc0001010.1_g000080 Rmu_sc0001075.1_g000041 Rmu_sc0001097.1_g000016 Rmu_sc0001173.1_g000020 Rmu_sc0001258.1_g000010 Rmu_sc0001425.1_g000031 Rmu_sc0001493.1_g000020 Rmu_sc0001493.1_g000021 Rmu_sc0001644.1_g000024 Rmu_sc0001648.1_g000039 Rmu_sc0001662.1_g000002 Rmu_sc0001849.1_g000046 Rmu_sc0001851.1_g000038 Rmu_sc0001861.1_g000006 Rmu_sc0001899.1_g000008 Rmu_sc0002231.1_g000023 Rmu_sc0002393.1_g000012 Rmu_sc0002515.1_g000010 Rmu_sc0002551.1_g000013 Rmu_sc0002680.1_g000029 Rmu_sc0002700.1_g000030 Rmu_sc0002700.1_g000031 Rmu_sc0002709.1_g000035 Rmu_sc0002779.1_g000017 Rmu_sc0003267.1_g000040 Rmu_sc0003306.1_g000009 Rmu_sc0003338.1_g000014 Rmu_sc0003522.1_g000038 Rmu_sc0003522.1_g000039 Rmu_sc0003653.1_g000031 Rmu_sc0003901.1_g000003 Rmu_sc0003920.1_g000009 Rmu_sc0004014.1_g000009 Rmu_sc0004016.1_g000013 Rmu_sc0004031.1_g000002 Rmu_sc0004106.1_g000001 Rmu_sc0004432.1_g000004 Rmu_sc0004481.1_g000020 Rmu_sc0004874.1_g000005 Rmu_sc0004928.1_g000005 Rmu_sc0005065.1_g000053 Rmu_sc0005091.1_g000005 Rmu_sc0005217.1_g000015 Rmu_sc0005242.1_g000002 Rmu_sc0005300.1_g000011 Rmu_sc0005400.1_g000004 Rmu_sc0005486.1_g000007 Rmu_sc0005527.1_g000015 Rmu_sc0006059.1_g000021 Rmu_sc0006087.1_g000004 Rmu_sc0006184.1_g000006 Rmu_sc0006184.1_g000007 Rmu_sc0006578.1_g000006 Rmu_sc0006730.1_g000010 Rmu_sc0006736.1_g000030 Rmu_sc0006736.1_g000033 Rmu_sc0007333.1_g000018 Rmu_sc0007856.1_g000010 Rmu_sc0008231.1_g000003 Rmu_sc0009862.1_g000012 Rmu_sc0010547.1_g000001 Rmu_sc0010547.1_g000003 Rmu_sc0010632.1_g000012 Rmu_sc0010747.1_g000008 Rmu_sc0011075.1_g000009 Rmu_sc0011565.1_g000004 Rmu_sc0011641.1_g000003 Rmu_sc0013102.1_g000013 Rmu_sc0013160.1_g000006 Rmu_sc0014846.1_g000004 Rmu_sc0017037.1_g000003 Rmu_sc0018203.1_g000001 Rmu_sc0018204.1_g000001 Rmu_sc0018348.1_g000001 Rmu_sc0019354.1_g000002 Rmu_sc0021630.1_g000002 Rmu_sc0022987.1_g000002 Rmu_sc0024469.1_g000005 Rmu_sc0033519.1_g000001 Rmu_sc0033519.1_g000002 Rmu_sc0033519.1_g000003 Rmu_sc0042775.1_g000001 Rmu_ssc0000110.1_g000003 Rmu_ssc0000110.1_g000004 Rmu_ssc0000126.1_g000068 Rmu_ssc0000200.1_g000007 Rmu_ssc0000295.1_g000003 Rmu_ssc0000295.1_g000004 Rmu_ssc0000299.1_g000010 Rmu_ssc0000308.1_g000024 Rmu_ssc0000339.1_g000006 Rmu_ssc0000385.1_g000012 Rmu_ssc0000409.1_g000004 Rmu_ssc0000421.1_g000004
rosa_roxburghii Rroxscaffold_156G00440360 Rroxscaffold_166G00440800 Rroxscaffold_1G00039040 Rroxscaffold_1G00039050 Rroxscaffold_1G00073950 Rroxscaffold_2G00091710 Rroxscaffold_2G00120050 Rroxscaffold_2G00122590 Rroxscaffold_3G00219700 Rroxscaffold_3G00264140 Rroxscaffold_4G00290600 Rroxscaffold_4G00323610 Rroxscaffold_4G00328460 Rroxscaffold_5G00343440 Rroxscaffold_5G00343570 Rroxscaffold_5G00378540 Rroxscaffold_5G00385090 Rroxscaffold_7G00169130 Rroxscaffold_7G00216420
rosa_rugosa Rorug01G0065800 Rorug01G0073500 Rorug01G0091700 Rorug01G0096500 Rorug01G0204700.1 Rorug01G0249100 Rorug01G0333800 Rorug01G0333900 Rorug01G0339500 Rorug01G0431300 Rorug02G0085400 Rorug02G0117500 Rorug02G0130900 Rorug02G0178800 Rorug02G0226700 Rorug02G0336300 Rorug02G0338700 Rorug02G0351400 Rorug02G0459900 Rorug03G0187000 Rorug03G0223700 Rorug03G0291300 Rorug03G0291300 Rorug03G0311100 Rorug03G0316900 Rorug03G0346000 Rorug04G0014500 Rorug04G0014600 Rorug04G0124100 Rorug04G0136500 Rorug04G0302000 Rorug04G0338100 Rorug04G0338200 Rorug04G0413100 Rorug05G0182200 Rorug05G0226500 Rorug05G0273300 Rorug05G0292200 Rorug05G0292200 Rorug05G0392500 Rorug05G0394500 Rorug05G0394600 Rorug05G0505600.1 Rorug06G0351400 Rorug06G0393400 Rorug06G0393600 Rorug06G0470000 Rorug07G0063100 Rorug07G0086800 Rorug07G0109200 Rorug07G0236100
rosa_samantha Rh1AG010800 Rh1AG011100 Rh1AG064900 Rh1AG088000 Rh1AG207100 Rh1AG262000 Rh1AG300800 Rh1BG043000 Rh1BG144600 Rh1BG180700 Rh1BG180800 Rh1BG328800 Rh1BG399400 Rh1CG041400 Rh1CG047300 Rh1CG379700 Rh1DG036500 Rh1DG083000 Rh1DG210700 Rh1DG210800 Rh1DG231100 Rh2AG007900 Rh2AG055500 Rh2AG339100 Rh2AG368100 Rh2BG243300 Rh2BG258900 Rh2BG292000 Rh2BG333500 Rh2BG387300 Rh2BG612800 Rh2BG619100 Rh2CG026500 Rh2CG163600 Rh2CG535700 Rh2DG186400 Rh2DG235000 Rh2DG314500 Rh2DG388500 Rh2DG391400 Rh2DG496900 Rh2DG526700 Rh2DG570700 Rh3AG330700 Rh3BG266900 Rh3CG236000 Rh3CG340400 Rh3DG090000 Rh3DG278400 Rh3DG297600 Rh3DG362600 Rh4AG001300 Rh4AG023300 Rh4AG097100 Rh4AG427000 Rh4BG029400 Rh4BG032400 Rh4BG086000 Rh4BG249200 Rh4CG001900 Rh4CG040600 Rh4CG093000 Rh4CG106300 Rh4CG113200 Rh4CG113900 Rh4DG002300 Rh4DG144400 Rh4DG234200 Rh5AG043700 Rh5AG084900 Rh5AG161500 Rh5AG409000 Rh5AG457200 Rh5AG457900 Rh5AG473700 Rh5AG520600 Rh5BG042100 Rh5BG124100 Rh5BG323500 Rh5BG417200 Rh5BG443700 Rh5BG451500 Rh5BG464900 Rh5BG470400 Rh5BG522500 Rh5CG068800 Rh5CG178300 Rh5CG231000 Rh5CG258600 Rh5CG394500 Rh5CG473700 Rh5DG164700 Rh5DG235400 Rh5DG261300 Rh5DG304900 Rh5DG334500 Rh5DG424300 Rh5DG458400 Rh5DG478600 Rh5DG552300 Rh5DG552700 Rh6AG037000 Rh6AG042100 Rh6AG255500 Rh6AG283400 Rh6AG291800 Rh6BG049600 Rh6BG080700 Rh6BG114600 Rh6BG128900 Rh6BG352500 Rh6CG052400 Rh6CG112900 Rh6CG113000 Rh6CG131300 Rh6CG157700 Rh6CG243200 Rh6CG254100 Rh6CG275700 Rh6CG299700 Rh6CG309100 Rh6CG317600 Rh6CG342600 Rh6CG471900 Rh6DG038200 Rh6DG102300 Rh6DG114400 Rh6DG225900 Rh6DG292900 Rh6DG320700 Rh6DG512800 Rh7AG217700 Rh7AG313900 Rh7AG446000 Rh7AG472600 Rh7BG223100 Rh7BG349900 Rh7BG352000 Rh7CG160200 Rh7CG233900 Rh7CG242700 Rh7CG273900 Rh7CG306400 Rh7CG322200 Rh7DG053800 Rh7DG077800 Rh7DG227700 Rh7DG404800
rosa_wichuraiana Rw0G003990 Rw2G022110 Rw2G024890 Rw6G005700 Rw7G008770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 759
AccB1I GGYRCC 1 cut(s) 531
AccB7I CCANNNNNTGG 2 cut(s) 997, 1322
AccBSI CCGCTC 1 cut(s) 682
AciI CCGC 2 cut(s) 682, 738
AclWI GGATC 3 cut(s) 384, 651, 1008
AcoI YGGCCR 1 cut(s) 748
AcsI RAATTY 7 cut(s) 162, 423, 492, 892, 956, 1094, 1151
AcuI CTGAAG 1 cut(s) 390
AcyI GRCGYC 2 cut(s) 322, 844
AdeI CACNNNGTG 1 cut(s) 1322
AfaI GTAC 6 cut(s) 403, 409, 459, 617, 730, 1592
AfiI CCNNNNNNNGG 4 cut(s) 282, 997, 1322, 1567
AflII CTTAAG 1 cut(s) 263
AflIII ACRYGT 2 cut(s) 1068, 1408
AgeI ACCGGT 1 cut(s) 1486
AgsI TTSAA 5 cut(s) 214, 707, 778, 1124, 1406
AjnI CCWGG 5 cut(s) 14, 192, 460, 990, 1496
AluBI AGCT 3 cut(s) 783, 1529, 1538
AluI AGCT 3 cut(s) 783, 1529, 1538
Alw21I GWGCWC 1 cut(s) 785
Alw26I GTCTC 3 cut(s) 886, 1077, 1506
AlwI GGATC 3 cut(s) 384, 651, 1008
AlwNI CAGNNNCTG 2 cut(s) 113, 997
Ama87I CYCGRG 3 cut(s) 558, 624, 1396
AoxI GGCC 3 cut(s) 42, 748, 981
ApeKI GCWGC 4 cut(s) 113, 286, 293, 304
ApoI RAATTY 7 cut(s) 162, 423, 492, 892, 956, 1094, 1151
ArsI GACNNNNNNTTYG 2 cut(s) 344, 376
AseI ATTAAT 2 cut(s) 1023, 1439
AsiGI ACCGGT 1 cut(s) 1486
Asp700I GAANNNNTTC 1 cut(s) 969
AspLEI GCGC 1 cut(s) 52
AspS9I GGNCC 1 cut(s) 1186
AsuC2I CCSGG 2 cut(s) 1397, 1398
AsuHPI GGTGA 1 cut(s) 1276
AvaI CYCGRG 3 cut(s) 558, 624, 1396
AvaII GGWCC 1 cut(s) 1186
AxyI CCTNAGG 3 cut(s) 909, 927, 1146
BalI TGGCCA 1 cut(s) 750
BanI GGYRCC 1 cut(s) 531
BanII GRGCYC 1 cut(s) 785
BbsI GAAGAC 1 cut(s) 227
Bbv12I GWGCWC 1 cut(s) 785
BbvI GCAGC 4 cut(s) 100, 273, 280, 316
BccI CCATC 4 cut(s) 145, 413, 667, 1109
BceAI ACGGC 3 cut(s) 57, 882, 968
BciT130I CCWGG 5 cut(s) 16, 194, 462, 992, 1498
BclI TGATCA 2 cut(s) 760, 943
BcnI CCSGG 2 cut(s) 1397, 1398
BcoDI GTCTC 3 cut(s) 886, 1077, 1506
BfrI CTTAAG 1 cut(s) 263
BfuAI ACCTGC 1 cut(s) 759
BisI GCNGC 4 cut(s) 114, 287, 294, 305
BlsI GCNGC 4 cut(s) 115, 288, 295, 306
Bme1390I CCNGG 7 cut(s) 16, 194, 462, 992, 1397, 1398, 1498
Bme18I GGWCC 1 cut(s) 1186
BmeT110I CYCGRG 3 cut(s) 558, 624, 1396
BmgT120I GGNCC 1 cut(s) 1186
BmiI GGNNCC 3 cut(s) 330, 533, 1188
BmrFI CCNGG 7 cut(s) 16, 194, 462, 992, 1397, 1398, 1498
BmsI GCATC 2 cut(s) 95, 262
BpiI GAAGAC 1 cut(s) 227
BplI GAGNNNNNCTC 2 cut(s) 1253, 1285
BpmI CTGGAG 1 cut(s) 1480
BpuEI CTTGAG 2 cut(s) 789, 1143
BpuMI CCSGG 2 cut(s) 1397, 1398
BsaBI GATNNNNATC 1 cut(s) 642
BsaHI GRCGYC 2 cut(s) 322, 844
BsaI GGTCTC 1 cut(s) 1506
BsaJI CCNNGG 6 cut(s) 14, 15, 317, 1395, 1396, 1425
BsaWI WCCGGW 3 cut(s) 142, 448, 1486
BsaXI ACNNNNNCTCC 4 cut(s) 385, 415, 1297, 1327
Bsc4I CCNNNNNNNGG 4 cut(s) 282, 997, 1322, 1567
Bse118I RCCGGY 1 cut(s) 1486
Bse1I ACTGG 2 cut(s) 1002, 1450
Bse21I CCTNAGG 3 cut(s) 909, 927, 1146
Bse3DI GCAATG 2 cut(s) 575, 733
Bse8I GATNNNNATC 1 cut(s) 642
BseBI CCWGG 5 cut(s) 16, 194, 462, 992, 1498
BseDI CCNNGG 6 cut(s) 14, 15, 317, 1395, 1396, 1425
BseGI GGATG 4 cut(s) 1101, 1219, 1228, 1435
BseJI GATNNNNATC 1 cut(s) 642
BseLI CCNNNNNNNGG 4 cut(s) 282, 997, 1322, 1567
BseMI GCAATG 2 cut(s) 575, 733
BseMII CTCAG 7 cut(s) 139, 452, 506, 876, 918, 923, 969
BseNI ACTGG 2 cut(s) 1002, 1450
BseRI GAGGAG 2 cut(s) 45, 1065
BseXI GCAGC 4 cut(s) 100, 273, 280, 316
BseYI CCCAGC 1 cut(s) 1299
BshFI GGCC 3 cut(s) 44, 750, 983
BshNI GGYRCC 1 cut(s) 531
BshTI ACCGGT 1 cut(s) 1486
BsiHKAI GWGCWC 1 cut(s) 785
BsiHKCI CYCGRG 3 cut(s) 558, 624, 1396
BsiSI CCGG 4 cut(s) 143, 449, 1397, 1487
BslFI GGGAC 4 cut(s) 668, 843, 1172, 1583
BslI CCNNNNNNNGG 4 cut(s) 282, 997, 1322, 1567
BsmAI GTCTC 3 cut(s) 886, 1077, 1506
BsmFI GGGAC 4 cut(s) 668, 843, 1172, 1583
BsmI GAATGC 1 cut(s) 20
BsnI GGCC 3 cut(s) 44, 750, 983
Bso31I GGTCTC 1 cut(s) 1506
BsoBI CYCGRG 3 cut(s) 558, 624, 1396
Bsp1286I GDGCHC 1 cut(s) 785
Bsp143I GATC 9 cut(s) 174, 376, 643, 760, 943, 1000, 1012, 1366, 1543
Bsp19I CCATGG 1 cut(s) 317
BspACI CCGC 2 cut(s) 682, 738
BspANI GGCC 3 cut(s) 44, 750, 983
BspCNI CTCAG 7 cut(s) 138, 451, 507, 877, 919, 922, 970
BspLI GGNNCC 3 cut(s) 330, 533, 1188
BspMI ACCTGC 1 cut(s) 759
BspPI GGATC 3 cut(s) 384, 651, 1008
BspQI GCTCTTC 1 cut(s) 773
BspT107I GGYRCC 1 cut(s) 531
BspTI CTTAAG 1 cut(s) 263
BspTNI GGTCTC 1 cut(s) 1506
BsrBI CCGCTC 1 cut(s) 682
BsrDI GCAATG 2 cut(s) 575, 733
BsrFI RCCGGY 1 cut(s) 1486
BsrI ACTGG 2 cut(s) 1002, 1450
BssAI RCCGGY 1 cut(s) 1486
BssECI CCNNGG 6 cut(s) 14, 15, 317, 1395, 1396, 1425
BssMI GATC 9 cut(s) 174, 376, 643, 760, 943, 1000, 1012, 1366, 1543
BssNI GRCGYC 2 cut(s) 322, 844
BssT1I CCWWGG 2 cut(s) 317, 1425
Bst2UI CCWGG 5 cut(s) 16, 194, 462, 992, 1498
Bst4CI ACNGT 2 cut(s) 1195, 1238
Bst6I CTCTTC 5 cut(s) 366, 417, 773, 1254, 1344
BstACI GRCGYC 2 cut(s) 322, 844
BstAFI CTTAAG 1 cut(s) 263
BstC8I GCNNGC 2 cut(s) 291, 1111
BstDEI CTNAG 8 cut(s) 125, 438, 515, 885, 909, 927, 978, 1146
BstDSI CCRYGG 1 cut(s) 317
BstF5I GGATG 4 cut(s) 1101, 1219, 1228, 1435
BstHHI GCGC 1 cut(s) 52
BstKTI GATC 9 cut(s) 177, 379, 646, 763, 946, 1003, 1015, 1369, 1546
BstMAI GTCTC 3 cut(s) 886, 1077, 1506
BstMBI GATC 9 cut(s) 174, 376, 643, 760, 943, 1000, 1012, 1366, 1543
BstMWI GCNNNNNNNGC 5 cut(s) 205, 313, 1106, 1421, 1535
BstNI CCWGG 5 cut(s) 16, 194, 462, 992, 1498
BstNSI RCATGY 2 cut(s) 1072, 1412
BstSCI CCNGG 7 cut(s) 14, 192, 460, 990, 1395, 1396, 1496
BstV1I GCAGC 4 cut(s) 100, 273, 280, 316
BstV2I GAAGAC 1 cut(s) 227
BstX2I RGATCY 2 cut(s) 376, 643
BstYI RGATCY 2 cut(s) 376, 643
Bsu36I CCTNAGG 3 cut(s) 909, 927, 1146
BsuRI GGCC 3 cut(s) 44, 750, 983
BtgI CCRYGG 1 cut(s) 317
BtsCI GGATG 4 cut(s) 1101, 1219, 1228, 1435
BtsI GCAGTG 1 cut(s) 1134
BtsIMutI CAGTG 5 cut(s) 366, 446, 975, 1134, 1243
BveI ACCTGC 1 cut(s) 759
Cac8I GCNNGC 2 cut(s) 291, 1111
CaiI CAGNNNCTG 2 cut(s) 113, 997
CfoI GCGC 1 cut(s) 52
Cfr10I RCCGGY 1 cut(s) 1486
Cfr13I GGNCC 1 cut(s) 1186
Cfr9I CCCGGG 1 cut(s) 1396
CseI GACGC 2 cut(s) 311, 833
Csp6I GTAC 6 cut(s) 402, 408, 458, 616, 729, 1591
CspAI ACCGGT 1 cut(s) 1486
CspCI CAANNNNNGTGG 2 cut(s) 651, 686
CviAII CATG 6 cut(s) 318, 485, 941, 1069, 1337, 1409
CviQI GTAC 6 cut(s) 402, 408, 458, 616, 729, 1591
DdeI CTNAG 8 cut(s) 125, 438, 515, 885, 909, 927, 978, 1146
DpnI GATC 9 cut(s) 176, 378, 645, 762, 945, 1002, 1014, 1368, 1545
DpnII GATC 9 cut(s) 174, 376, 643, 760, 943, 1000, 1012, 1366, 1543
DraIII CACNNNGTG 1 cut(s) 1322
EaeI YGGCCR 1 cut(s) 748
Eam1104I CTCTTC 5 cut(s) 366, 417, 773, 1254, 1344
EarI CTCTTC 5 cut(s) 366, 417, 773, 1254, 1344
Ecl136II GAGCTC 1 cut(s) 783
Eco130I CCWWGG 2 cut(s) 317, 1425
Eco24I GRGCYC 1 cut(s) 785
Eco31I GGTCTC 1 cut(s) 1506
Eco47I GGWCC 1 cut(s) 1186
Eco53kI GAGCTC 1 cut(s) 783
Eco57I CTGAAG 1 cut(s) 390
Eco81I CCTNAGG 3 cut(s) 909, 927, 1146
Eco88I CYCGRG 3 cut(s) 558, 624, 1396
EcoICRI GAGCTC 1 cut(s) 783
EcoO109I RGGNCCY 1 cut(s) 1186
EcoRII CCWGG 5 cut(s) 14, 192, 460, 990, 1496
EcoT14I CCWWGG 2 cut(s) 317, 1425
EcoT38I GRGCYC 1 cut(s) 785
ErhI CCWWGG 2 cut(s) 317, 1425
FaeI CATG 6 cut(s) 321, 488, 944, 1072, 1340, 1412
FalI AAGNNNNNCTT 2 cut(s) 273, 305
FaqI GGGAC 4 cut(s) 668, 843, 1172, 1583
FatI CATG 6 cut(s) 317, 484, 940, 1068, 1336, 1408
FauI CCCGC 2 cut(s) 675, 731
FauNDI CATATG 1 cut(s) 753
FbaI TGATCA 2 cut(s) 760, 943
Fnu4HI GCNGC 4 cut(s) 114, 287, 294, 305
FokI GGATG 4 cut(s) 1088, 1226, 1235, 1442
FriOI GRGCYC 1 cut(s) 785
Fsp4HI GCNGC 4 cut(s) 114, 287, 294, 305
GlaI GCGC 1 cut(s) 51
GluI GCNGC 4 cut(s) 114, 287, 294, 305
GsaI CCCAGC 1 cut(s) 1303
GsuI CTGGAG 1 cut(s) 1480
HaeIII GGCC 3 cut(s) 44, 750, 983
HapII CCGG 4 cut(s) 143, 449, 1397, 1487
HgaI GACGC 2 cut(s) 311, 833
HhaI GCGC 1 cut(s) 52
Hin1I GRCGYC 2 cut(s) 322, 844
Hin1II CATG 6 cut(s) 321, 488, 944, 1072, 1340, 1412
Hin6I GCGC 1 cut(s) 50
HinP1I GCGC 1 cut(s) 50
HincII GTYRAC 3 cut(s) 988, 1135, 1234
HindII GTYRAC 3 cut(s) 988, 1135, 1234
HinfI GANTC 3 cut(s) 182, 517, 627
HpaII CCGG 4 cut(s) 143, 449, 1397, 1487
HphI GGTGA 1 cut(s) 1276
Hpy166II GTNNAC 6 cut(s) 729, 874, 988, 1135, 1234, 1267
Hpy188I TCNGA 6 cut(s) 569, 702, 886, 948, 1329, 1362
Hpy188III TCNNGA 8 cut(s) 172, 416, 521, 775, 806, 848, 1541, 1547
Hpy8I GTNNAC 6 cut(s) 729, 874, 988, 1135, 1234, 1267
HpyAV CCTTC 3 cut(s) 675, 736, 840
HpyCH4III ACNGT 2 cut(s) 1195, 1238
HpyCH4V TGCA 9 cut(s) 86, 580, 650, 768, 916, 935, 962, 1109, 1415
HpyF10VI GCNNNNNNNGC 5 cut(s) 205, 313, 1106, 1421, 1535
HpyF3I CTNAG 8 cut(s) 125, 438, 515, 885, 909, 927, 978, 1146
Hsp92I GRCGYC 2 cut(s) 322, 844
Hsp92II CATG 6 cut(s) 321, 488, 944, 1072, 1340, 1412
HspAI GCGC 1 cut(s) 50
Ksp22I TGATCA 2 cut(s) 760, 943
Kzo9I GATC 9 cut(s) 174, 376, 643, 760, 943, 1000, 1012, 1366, 1543
LguI GCTCTTC 1 cut(s) 773
LmnI GCTCC 2 cut(s) 196, 1279
Lsp1109I GCAGC 4 cut(s) 100, 273, 280, 316
LweI GCATC 2 cut(s) 95, 262
MalI GATC 9 cut(s) 176, 378, 645, 762, 945, 1002, 1014, 1368, 1545
MbiI CCGCTC 1 cut(s) 682
MboI GATC 9 cut(s) 174, 376, 643, 760, 943, 1000, 1012, 1366, 1543
MboII GAAGA 9 cut(s) 227, 230, 233, 383, 404, 790, 977, 1271, 1361
MflI RGATCY 2 cut(s) 376, 643
MhlI GDGCHC 1 cut(s) 785
MlsI TGGCCA 1 cut(s) 750
MluNI TGGCCA 1 cut(s) 750
MlyI GAGTC 2 cut(s) 526, 636
MmeI TCCRAC 3 cut(s) 83, 547, 1147
Mox20I TGGCCA 1 cut(s) 750
MroXI GAANNNNTTC 1 cut(s) 969
MscI TGGCCA 1 cut(s) 750
MseI TTAA 6 cut(s) 203, 264, 822, 1023, 1439, 1458
Msp20I TGGCCA 1 cut(s) 750
MspCI CTTAAG 1 cut(s) 263
MspI CCGG 4 cut(s) 143, 449, 1397, 1487
MspR9I CCNGG 7 cut(s) 16, 194, 462, 992, 1397, 1398, 1498
Mva1269I GAATGC 1 cut(s) 20
MvaI CCWGG 5 cut(s) 16, 194, 462, 992, 1498
MwoI GCNNNNNNNGC 5 cut(s) 205, 313, 1106, 1421, 1535
NciI CCSGG 2 cut(s) 1397, 1398
NcoI CCATGG 1 cut(s) 317
NdeI CATATG 1 cut(s) 753
NdeII GATC 9 cut(s) 174, 376, 643, 760, 943, 1000, 1012, 1366, 1543
NlaIII CATG 6 cut(s) 321, 488, 944, 1072, 1340, 1412
NlaIV GGNNCC 3 cut(s) 330, 533, 1188
NspI RCATGY 2 cut(s) 1072, 1412
PaeR7I CTCGAG 1 cut(s) 624
PasI CCCWGGG 1 cut(s) 15
PciI ACATGT 2 cut(s) 1068, 1408
PciSI GCTCTTC 1 cut(s) 773
PcsI WCGNNNNNNNCGW 1 cut(s) 841
PctI GAATGC 1 cut(s) 20
PdmI GAANNNNTTC 1 cut(s) 969
PfeI GAWTC 1 cut(s) 182
PflMI CCANNNNNTGG 2 cut(s) 997, 1322
PinAI ACCGGT 1 cut(s) 1486
PkrI GCNGC 4 cut(s) 115, 288, 295, 306
PleI GAGTC 2 cut(s) 525, 635
PpsI GAGTC 2 cut(s) 525, 635
PpuMI RGGWCCY 1 cut(s) 1186
PscI ACATGT 2 cut(s) 1068, 1408
PshBI ATTAAT 2 cut(s) 1023, 1439
Psp124BI GAGCTC 1 cut(s) 785
Psp5II RGGWCCY 1 cut(s) 1186
Psp6I CCWGG 5 cut(s) 14, 192, 460, 990, 1496
PspFI CCCAGC 1 cut(s) 1299
PspGI CCWGG 5 cut(s) 14, 192, 460, 990, 1496
PspN4I GGNNCC 3 cut(s) 330, 533, 1188
PspPI GGNCC 1 cut(s) 1186
PspPPI RGGWCCY 1 cut(s) 1186
PspXI VCTCGAGB 1 cut(s) 624
PstNI CAGNNNCTG 2 cut(s) 113, 997
PsuI RGATCY 2 cut(s) 376, 643
RsaI GTAC 6 cut(s) 403, 409, 459, 617, 730, 1592
RsaNI GTAC 6 cut(s) 402, 408, 458, 616, 729, 1591
SacI GAGCTC 1 cut(s) 785
SapI GCTCTTC 1 cut(s) 773
SaqAI TTAA 6 cut(s) 203, 264, 822, 1023, 1439, 1458
SatI GCNGC 4 cut(s) 114, 287, 294, 305
Sau3AI GATC 9 cut(s) 174, 376, 643, 760, 943, 1000, 1012, 1366, 1543
Sau96I GGNCC 1 cut(s) 1186
SchI GAGTC 2 cut(s) 526, 636
ScrFI CCNGG 7 cut(s) 16, 194, 462, 992, 1397, 1398, 1498
SduI GDGCHC 1 cut(s) 785
SfaNI GCATC 2 cut(s) 95, 262
Sfr274I CTCGAG 1 cut(s) 624
SinI GGWCC 1 cut(s) 1186
SlaI CTCGAG 1 cut(s) 624
SmaI CCCGGG 1 cut(s) 1398
SmlI CTYRAG 4 cut(s) 263, 624, 804, 1158
SmoI CTYRAG 4 cut(s) 263, 624, 804, 1158
SsiI CCGC 2 cut(s) 682, 738
SstI GAGCTC 1 cut(s) 785
StyD4I CCNGG 7 cut(s) 14, 192, 460, 990, 1395, 1396, 1496
StyI CCWWGG 2 cut(s) 317, 1425
TaaI ACNGT 2 cut(s) 1195, 1238
TaqI TCGA 1 cut(s) 625
TatI WGTACW 3 cut(s) 407, 728, 1590
TfiI GAWTC 1 cut(s) 182
Tru1I TTAA 6 cut(s) 203, 264, 822, 1023, 1439, 1458
Tru9I TTAA 6 cut(s) 203, 264, 822, 1023, 1439, 1458
TscAI CASTG 5 cut(s) 373, 446, 982, 1134, 1243
TseI GCWGC 4 cut(s) 113, 286, 293, 304
TspDTI ATGAA 7 cut(s) 195, 347, 1041, 1187, 1260, 1272, 1476
TspGWI ACGGA 1 cut(s) 371
TspMI CCCGGG 1 cut(s) 1396
TspRI CASTG 5 cut(s) 373, 446, 982, 1134, 1243
Van91I CCANNNNNTGG 2 cut(s) 997, 1322
Vha464I CTTAAG 1 cut(s) 263
VpaK11BI GGWCC 1 cut(s) 1186
VspI ATTAAT 2 cut(s) 1023, 1439
XapI RAATTY 7 cut(s) 162, 423, 492, 892, 956, 1094, 1151
XceI RCATGY 2 cut(s) 1072, 1412
XhoI CTCGAG 1 cut(s) 624
XmaI CCCGGG 1 cut(s) 1396
XmnI GAANNNNTTC 1 cut(s) 969
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.