Rmu_sc0003920.1_g000009

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003920.1
OG0000044
Physical Location & Seq
Forward (+)
21770 .. 23146
1377 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003920.1_g000009.1.cds

Sequence Viewer

Length: 1377 bp
atggcggcagacatcccaaaaaaacaaaagtcctcctacgcagcagctctgactgaggtgtctccaatctcctttgccatcgctgacttgccttcgcctttctttgaagatggtttgaactctattcgcatctccaaagaaccatttcttcgcggtctcgagaaatgcaaaaccaacttgattggtcgtgttaattctcctgtcaagaccccagaccttgtacaacaattgaagcaactatggtcgggattagatcactggactgtggcacctcttggtaggggttttttcatgctccagttcaaaaacttagttgatatgcagctagtctggtcgtcgggaacagtacgtcttaattccggcatgctccgtttgatcaaatggtcacctgagttctcgccatctacatacagaaattccttcgctcaggtatgggtgcgattttgggacttagggtttgcctactgggatcaacaaactctatttgaaattgcatctggtattggtacgccccttaaacttgacccacgcaccacgaaccgctccgtgggcttgtttgctagaattttagtggatgttgacttctcacagcctcttcacgacaagctcagaatcaccagggccaatggtgaggttgtggtgattggagttgagtatgagtctgtacctgaaatctgcaccaggtgtgggattgttggccatgtcgctggtacttgccgttctaaggctccggaccacactgtggctgatattccaaatgagcggggaaggtcaatagagcgttctgatctgaagaaaaggaggaacaatcgatctcacaagtcacagcacaactcaaagcatgggggtgcaataaggagaccagtcaaagccagacaacctgatgatgttgcaccactgacggcaaccacagcagcaaccttaaggcacgacgttgaagatatgatggcttcatctgttttgaataatgttgagatttccacagcagctccaactattactgcagttccagctttcacagctactctaattatggatgagctggcgatggctgctgtgcccgtgcaacaagctgattcaagtgatagcgtcccacctggatttactcggatggaaacggaatctgatctccaacctgctagctctacgtcgactcccgtggtttcttcagttgctccaccaattattatggccgactgtaatcaaagagactgtcagatgggagttacaactgaccttttggaggaaggagaattcacacccgtcctacataagaagtcgaagaaattgctgaagcaaaatgagaaagcaaaaatgaaaataatctcccacaaacctgcgggacgagctctacttcgcaagggagctagtctctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

458

Amino Acids

50.42

Weight (kDa)

9.27

Isoelectric Point (pI)

47.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000044)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07760 AT5G28823
fragaria_vesca FvH4_1g13572 FvH4_2g03281 FvH4_2g04691 FvH4_2g08332 FvH4_2g08333 FvH4_2g15313 FvH4_2g26101 FvH4_2g29541 FvH4_3g06911 FvH4_3g34351 FvH4_3g43733 FvH4_4g02432 FvH4_4g05601 FvH4_4g08213 FvH4_4g09961 FvH4_4g10131 FvH4_4g20001 FvH4_4g20002 FvH4_5g01051 FvH4_5g01401 FvH4_5g27943 FvH4_6g09220 FvH4_6g17383 FvH4_6g35491 FvH4_6g46421 FvH4_7g04151 FvH4_7g13962 FvH4_7g18611 FvH4_7g19491 FvH4_7g19511 FvH4_7g26562
malus_domestica MD06G1221600.v1.1
pyrus_communis pycom10g21150
rosa_chinensis RchiOBHm_Chr1g0337571 RchiOBHm_Chr2g0168771 RchiOBHm_Chr3g0453631 RchiOBHm_Chr6g0278581
rosa_laevigata RLG00000001899 RLG00000001925 RLG00000002026 RLG00000003410 RLG00000003767 RLG00000004304 RLG00000004473 RLG00000004677 RLG00000006856 RLG00000007994 RLG00000009888 RLG00000011627 RLG00000012174 RLG00000012217 RLG00000013118 RLG00000013736 RLG00000014194 RLG00000014251 RLG00000015011 RLG00000015057 RLG00000015235 RLG00000017416 RLG00000018052 RLG00000018537 RLG00000019968 RLG00000020096 RLG00000020263 RLG00000022606 RLG00000023119 RLG00000028111 RLG00000029686 RLG00000030126 RLG00000031124 RLG00000031236 RLG00000032766 RLG00000033171 RLG00000033548 RLG00000033987 RLG00000034062 RLG00000035115 RLG00000035863
rosa_multiflora Rmu_co8036712.1_g000001 Rmu_co8080248.1_g000001 Rmu_co8208334.1_g000001 Rmu_co8253451.1_g000001 Rmu_co8393241.1_g000001 Rmu_co8522225.1_g000005 Rmu_sc0000060.1_g000030 Rmu_sc0000060.1_g000031 Rmu_sc0000060.1_g000032 Rmu_sc0000090.1_g000008 Rmu_sc0000149.1_g000051 Rmu_sc0000149.1_g000058 Rmu_sc0000309.1_g000050 Rmu_sc0000370.1_g000022 Rmu_sc0000370.1_g000023 Rmu_sc0000370.1_g000024 Rmu_sc0000418.1_g000018 Rmu_sc0000427.1_g000014 Rmu_sc0000427.1_g000015 Rmu_sc0000434.1_g000008 Rmu_sc0000487.1_g000038 Rmu_sc0000487.1_g000039 Rmu_sc0000569.1_g000029 Rmu_sc0000580.1_g000097 Rmu_sc0000595.1_g000068 Rmu_sc0000607.1_g000027 Rmu_sc0000738.1_g000004 Rmu_sc0000758.1_g000001 Rmu_sc0000758.1_g000002 Rmu_sc0000870.1_g000019 Rmu_sc0000924.1_g000040 Rmu_sc0000924.1_g000041 Rmu_sc0000999.1_g000037 Rmu_sc0001001.1_g000001 Rmu_sc0001010.1_g000080 Rmu_sc0001075.1_g000041 Rmu_sc0001097.1_g000016 Rmu_sc0001173.1_g000020 Rmu_sc0001258.1_g000010 Rmu_sc0001425.1_g000031 Rmu_sc0001493.1_g000020 Rmu_sc0001493.1_g000021 Rmu_sc0001644.1_g000024 Rmu_sc0001648.1_g000039 Rmu_sc0001662.1_g000002 Rmu_sc0001849.1_g000046 Rmu_sc0001851.1_g000038 Rmu_sc0001861.1_g000006 Rmu_sc0001899.1_g000008 Rmu_sc0002231.1_g000023 Rmu_sc0002393.1_g000012 Rmu_sc0002515.1_g000010 Rmu_sc0002551.1_g000013 Rmu_sc0002680.1_g000029 Rmu_sc0002700.1_g000030 Rmu_sc0002700.1_g000031 Rmu_sc0002709.1_g000035 Rmu_sc0002779.1_g000017 Rmu_sc0003267.1_g000040 Rmu_sc0003306.1_g000009 Rmu_sc0003338.1_g000014 Rmu_sc0003522.1_g000038 Rmu_sc0003522.1_g000039 Rmu_sc0003653.1_g000031 Rmu_sc0003901.1_g000003 Rmu_sc0003920.1_g000009 Rmu_sc0004014.1_g000009 Rmu_sc0004016.1_g000013 Rmu_sc0004031.1_g000002 Rmu_sc0004106.1_g000001 Rmu_sc0004432.1_g000004 Rmu_sc0004481.1_g000020 Rmu_sc0004874.1_g000005 Rmu_sc0004928.1_g000005 Rmu_sc0005065.1_g000053 Rmu_sc0005091.1_g000005 Rmu_sc0005217.1_g000015 Rmu_sc0005242.1_g000002 Rmu_sc0005300.1_g000011 Rmu_sc0005400.1_g000004 Rmu_sc0005486.1_g000007 Rmu_sc0005527.1_g000015 Rmu_sc0006059.1_g000021 Rmu_sc0006087.1_g000004 Rmu_sc0006184.1_g000006 Rmu_sc0006184.1_g000007 Rmu_sc0006578.1_g000006 Rmu_sc0006730.1_g000010 Rmu_sc0006736.1_g000030 Rmu_sc0006736.1_g000033 Rmu_sc0007333.1_g000018 Rmu_sc0007856.1_g000010 Rmu_sc0008231.1_g000003 Rmu_sc0009862.1_g000012 Rmu_sc0010547.1_g000001 Rmu_sc0010547.1_g000003 Rmu_sc0010632.1_g000012 Rmu_sc0010747.1_g000008 Rmu_sc0011075.1_g000009 Rmu_sc0011565.1_g000004 Rmu_sc0011641.1_g000003 Rmu_sc0013102.1_g000013 Rmu_sc0013160.1_g000006 Rmu_sc0014846.1_g000004 Rmu_sc0017037.1_g000003 Rmu_sc0018203.1_g000001 Rmu_sc0018204.1_g000001 Rmu_sc0018348.1_g000001 Rmu_sc0019354.1_g000002 Rmu_sc0021630.1_g000002 Rmu_sc0022987.1_g000002 Rmu_sc0024469.1_g000005 Rmu_sc0033519.1_g000001 Rmu_sc0033519.1_g000002 Rmu_sc0033519.1_g000003 Rmu_sc0042775.1_g000001 Rmu_ssc0000110.1_g000003 Rmu_ssc0000110.1_g000004 Rmu_ssc0000126.1_g000068 Rmu_ssc0000200.1_g000007 Rmu_ssc0000295.1_g000003 Rmu_ssc0000295.1_g000004 Rmu_ssc0000299.1_g000010 Rmu_ssc0000308.1_g000024 Rmu_ssc0000339.1_g000006 Rmu_ssc0000385.1_g000012 Rmu_ssc0000409.1_g000004 Rmu_ssc0000421.1_g000004
rosa_roxburghii Rroxscaffold_156G00440360 Rroxscaffold_166G00440800 Rroxscaffold_1G00039040 Rroxscaffold_1G00039050 Rroxscaffold_1G00073950 Rroxscaffold_2G00091710 Rroxscaffold_2G00120050 Rroxscaffold_2G00122590 Rroxscaffold_3G00219700 Rroxscaffold_3G00264140 Rroxscaffold_4G00290600 Rroxscaffold_4G00323610 Rroxscaffold_4G00328460 Rroxscaffold_5G00343440 Rroxscaffold_5G00343570 Rroxscaffold_5G00378540 Rroxscaffold_5G00385090 Rroxscaffold_7G00169130 Rroxscaffold_7G00216420
rosa_rugosa Rorug01G0065800 Rorug01G0073500 Rorug01G0091700 Rorug01G0096500 Rorug01G0204700.1 Rorug01G0249100 Rorug01G0333800 Rorug01G0333900 Rorug01G0339500 Rorug01G0431300 Rorug02G0085400 Rorug02G0117500 Rorug02G0130900 Rorug02G0178800 Rorug02G0226700 Rorug02G0336300 Rorug02G0338700 Rorug02G0351400 Rorug02G0459900 Rorug03G0187000 Rorug03G0223700 Rorug03G0291300 Rorug03G0291300 Rorug03G0311100 Rorug03G0316900 Rorug03G0346000 Rorug04G0014500 Rorug04G0014600 Rorug04G0124100 Rorug04G0136500 Rorug04G0302000 Rorug04G0338100 Rorug04G0338200 Rorug04G0413100 Rorug05G0182200 Rorug05G0226500 Rorug05G0273300 Rorug05G0292200 Rorug05G0292200 Rorug05G0392500 Rorug05G0394500 Rorug05G0394600 Rorug05G0505600.1 Rorug06G0351400 Rorug06G0393400 Rorug06G0393600 Rorug06G0470000 Rorug07G0063100 Rorug07G0086800 Rorug07G0109200 Rorug07G0236100
rosa_samantha Rh1AG010800 Rh1AG011100 Rh1AG064900 Rh1AG088000 Rh1AG207100 Rh1AG262000 Rh1AG300800 Rh1BG043000 Rh1BG144600 Rh1BG180700 Rh1BG180800 Rh1BG328800 Rh1BG399400 Rh1CG041400 Rh1CG047300 Rh1CG379700 Rh1DG036500 Rh1DG083000 Rh1DG210700 Rh1DG210800 Rh1DG231100 Rh2AG007900 Rh2AG055500 Rh2AG339100 Rh2AG368100 Rh2BG243300 Rh2BG258900 Rh2BG292000 Rh2BG333500 Rh2BG387300 Rh2BG612800 Rh2BG619100 Rh2CG026500 Rh2CG163600 Rh2CG535700 Rh2DG186400 Rh2DG235000 Rh2DG314500 Rh2DG388500 Rh2DG391400 Rh2DG496900 Rh2DG526700 Rh2DG570700 Rh3AG330700 Rh3BG266900 Rh3CG236000 Rh3CG340400 Rh3DG090000 Rh3DG278400 Rh3DG297600 Rh3DG362600 Rh4AG001300 Rh4AG023300 Rh4AG097100 Rh4AG427000 Rh4BG029400 Rh4BG032400 Rh4BG086000 Rh4BG249200 Rh4CG001900 Rh4CG040600 Rh4CG093000 Rh4CG106300 Rh4CG113200 Rh4CG113900 Rh4DG002300 Rh4DG144400 Rh4DG234200 Rh5AG043700 Rh5AG084900 Rh5AG161500 Rh5AG409000 Rh5AG457200 Rh5AG457900 Rh5AG473700 Rh5AG520600 Rh5BG042100 Rh5BG124100 Rh5BG323500 Rh5BG417200 Rh5BG443700 Rh5BG451500 Rh5BG464900 Rh5BG470400 Rh5BG522500 Rh5CG068800 Rh5CG178300 Rh5CG231000 Rh5CG258600 Rh5CG394500 Rh5CG473700 Rh5DG164700 Rh5DG235400 Rh5DG261300 Rh5DG304900 Rh5DG334500 Rh5DG424300 Rh5DG458400 Rh5DG478600 Rh5DG552300 Rh5DG552700 Rh6AG037000 Rh6AG042100 Rh6AG255500 Rh6AG283400 Rh6AG291800 Rh6BG049600 Rh6BG080700 Rh6BG114600 Rh6BG128900 Rh6BG352500 Rh6CG052400 Rh6CG112900 Rh6CG113000 Rh6CG131300 Rh6CG157700 Rh6CG243200 Rh6CG254100 Rh6CG275700 Rh6CG299700 Rh6CG309100 Rh6CG317600 Rh6CG342600 Rh6CG471900 Rh6DG038200 Rh6DG102300 Rh6DG114400 Rh6DG225900 Rh6DG292900 Rh6DG320700 Rh6DG512800 Rh7AG217700 Rh7AG313900 Rh7AG446000 Rh7AG472600 Rh7BG223100 Rh7BG349900 Rh7BG352000 Rh7CG160200 Rh7CG233900 Rh7CG242700 Rh7CG273900 Rh7CG306400 Rh7CG322200 Rh7DG053800 Rh7DG077800 Rh7DG227700 Rh7DG404800
rosa_wichuraiana Rw0G003990 Rw2G022110 Rw2G024890 Rw6G005700 Rw7G008770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 58
Acc36I ACCTGC 2 cut(s) 1144, 1345
AccB1I GGYRCC 1 cut(s) 268
AccB7I CCANNNNNTGG 1 cut(s) 742
AccBSI CCGCTC 2 cut(s) 543, 763
AccI GTMKAC 1 cut(s) 1151
AccII CGCG 1 cut(s) 153
AccIII TCCGGA 1 cut(s) 730
AciI CCGC 5 cut(s) 5, 153, 541, 763, 1340
AclWI GGATC 1 cut(s) 477
AcoI YGGCCR 2 cut(s) 697, 1191
AcsI RAATTY 3 cut(s) 415, 564, 1253
AcuI CTGAAG 3 cut(s) 812, 1152, 1313
AdeI CACNNNGTG 2 cut(s) 684, 742
AfaI GTAC 5 cut(s) 222, 348, 508, 666, 712
AfiI CCNNNNNNNGG 5 cut(s) 547, 687, 724, 742, 1243
AflII CTTAAG 1 cut(s) 922
AgsI TTSAA 8 cut(s) 107, 118, 232, 304, 488, 938, 964, 1080
AjnI CCWGG 3 cut(s) 617, 680, 1096
Alw21I GWGCWC 1 cut(s) 1351
Alw26I GTCTC 4 cut(s) 66, 161, 853, 1203
AlwI GGATC 1 cut(s) 477
Ama87I CYCGRG 1 cut(s) 158
Aor13HI TCCGGA 1 cut(s) 730
AoxI GGCC 3 cut(s) 621, 697, 1191
ApeKI GCWGC 6 cut(s) 41, 44, 322, 914, 986, 1052
ApoI RAATTY 3 cut(s) 415, 564, 1253
ArsI GACNNNNNNTTYG 4 cut(s) 440, 472, 1198, 1230
Asp700I GAANNNNTTC 1 cut(s) 144
AspS9I GGNCC 2 cut(s) 621, 733
AsuHPI GGTGA 4 cut(s) 378, 607, 641, 652
AsuNHI GCTAGC 1 cut(s) 1139
AvaI CYCGRG 1 cut(s) 158
AvaII GGWCC 1 cut(s) 733
BaeGI GKGCMC 1 cut(s) 1062
BalI TGGCCA 1 cut(s) 699
BanI GGYRCC 1 cut(s) 268
BanII GRGCYC 1 cut(s) 1351
Bbv12I GWGCWC 1 cut(s) 1351
BbvI GCAGC 6 cut(s) 53, 56, 334, 926, 998, 1039
BccI CCATC 7 cut(s) 86, 104, 409, 940, 1042, 1105, 1213
BceAI ACGGC 2 cut(s) 702, 918
BcgI CGANNNNNNTGC 2 cut(s) 1270, 1304
BciT130I CCWGG 3 cut(s) 619, 682, 1098
BclI TGATCA 1 cut(s) 375
BcoDI GTCTC 4 cut(s) 66, 161, 853, 1203
BfaI CTAG 5 cut(s) 326, 561, 1140, 1368, 1375
BfmI CTRYAG 1 cut(s) 1002
BfrI CTTAAG 1 cut(s) 922
BfuAI ACCTGC 2 cut(s) 1144, 1345
BisI GCNGC 7 cut(s) 6, 42, 45, 323, 915, 987, 1053
BlsI GCNGC 7 cut(s) 7, 43, 46, 324, 916, 988, 1054
Bme1390I CCNGG 3 cut(s) 619, 682, 1098
Bme18I GGWCC 1 cut(s) 733
BmeT110I CYCGRG 1 cut(s) 158
BmgT120I GGNCC 2 cut(s) 621, 733
BmiI GGNNCC 2 cut(s) 270, 729
BmrFI CCNGG 3 cut(s) 619, 682, 1098
BmrI ACTGGG 1 cut(s) 475
BmsI GCATC 2 cut(s) 138, 503
BmtI GCTAGC 1 cut(s) 1143
BmuI ACTGGG 1 cut(s) 475
BplI GAGNNNNNCTC 1 cut(s) 1356
BpmI CTGGAG 1 cut(s) 281
Bpu10I CCTNAGC 1 cut(s) 426
Bsa29I ATCGAT 1 cut(s) 811
BsaI GGTCTC 2 cut(s) 161, 853
BsaJI CCNNGG 3 cut(s) 546, 618, 1158
BsaWI WCCGGW 1 cut(s) 730
BsaXI ACNNNNNCTCC 4 cut(s) 973, 1003, 1138, 1168
Bsc4I CCNNNNNNNGG 5 cut(s) 547, 687, 724, 742, 1243
Bse1I ACTGG 4 cut(s) 263, 298, 470, 863
BseAI TCCGGA 1 cut(s) 730
BseBI CCWGG 3 cut(s) 619, 682, 1098
BseCI ATCGAT 1 cut(s) 811
BseDI CCNNGG 3 cut(s) 546, 618, 1158
BseGI GGATG 4 cut(s) 12, 580, 1042, 1116
BseLI CCNNNNNNNGG 5 cut(s) 547, 687, 724, 742, 1243
BseMII CTCAG 4 cut(s) 45, 381, 440, 622
BseNI ACTGG 4 cut(s) 263, 298, 470, 863
BseSI GKGCMC 1 cut(s) 1062
BseXI GCAGC 6 cut(s) 53, 56, 334, 926, 998, 1039
BsgI GTGCAG 1 cut(s) 661
Bsh1236I CGCG 1 cut(s) 153
BshFI GGCC 3 cut(s) 623, 699, 1193
BshNI GGYRCC 1 cut(s) 268
BshVI ATCGAT 1 cut(s) 811
BsiHKAI GWGCWC 1 cut(s) 1351
BsiHKCI CYCGRG 1 cut(s) 158
BsiSI CCGG 2 cut(s) 360, 731
BslFI GGGAC 3 cut(s) 461, 1076, 1356
BslI CCNNNNNNNGG 5 cut(s) 547, 687, 724, 742, 1243
BsmAI GTCTC 4 cut(s) 66, 161, 853, 1203
BsmFI GGGAC 3 cut(s) 461, 1076, 1356
BsnI GGCC 3 cut(s) 623, 699, 1193
Bso31I GGTCTC 2 cut(s) 161, 853
BsoBI CYCGRG 1 cut(s) 158
Bsp1286I GDGCHC 2 cut(s) 1062, 1351
Bsp13I TCCGGA 1 cut(s) 730
Bsp1407I TGTACA 1 cut(s) 220
Bsp143I GATC 6 cut(s) 253, 375, 469, 787, 812, 1126
BspACI CCGC 5 cut(s) 5, 153, 541, 763, 1340
BspANI GGCC 3 cut(s) 623, 699, 1193
BspCNI CTCAG 4 cut(s) 46, 382, 439, 621
BspDI ATCGAT 1 cut(s) 811
BspEI TCCGGA 1 cut(s) 730
BspFNI CGCG 1 cut(s) 153
BspLI GGNNCC 2 cut(s) 270, 729
BspMAI CTGCAG 1 cut(s) 1006
BspMI ACCTGC 2 cut(s) 1144, 1345
BspOI GCTAGC 1 cut(s) 1143
BspPI GGATC 1 cut(s) 477
BspT107I GGYRCC 1 cut(s) 268
BspTI CTTAAG 1 cut(s) 922
BspTNI GGTCTC 2 cut(s) 161, 853
BsrBI CCGCTC 2 cut(s) 543, 763
BsrGI TGTACA 1 cut(s) 220
BsrI ACTGG 4 cut(s) 263, 298, 470, 863
BssECI CCNNGG 3 cut(s) 546, 618, 1158
BssMI GATC 6 cut(s) 253, 375, 469, 787, 812, 1126
Bst2UI CCWGG 3 cut(s) 619, 682, 1098
Bst4CI ACNGT 5 cut(s) 265, 346, 742, 1199, 1214
Bst6I CTCTTC 1 cut(s) 600
BstAFI CTTAAG 1 cut(s) 922
BstAUI TGTACA 1 cut(s) 220
BstC8I GCNNGC 3 cut(s) 365, 1044, 1141
BstDEI CTNAG 7 cut(s) 54, 310, 390, 426, 451, 608, 723
BstDSI CCRYGG 2 cut(s) 546, 1158
BstEII GGTNACC 1 cut(s) 384
BstENI CCTNNNNNAGG 1 cut(s) 1241
BstF5I GGATG 4 cut(s) 12, 580, 1042, 1116
BstFNI CGCG 1 cut(s) 153
BstKTI GATC 6 cut(s) 256, 378, 472, 790, 815, 1129
BstMAI GTCTC 4 cut(s) 66, 161, 853, 1203
BstMBI GATC 6 cut(s) 253, 375, 469, 787, 812, 1126
BstMWI GCNNNNNNNGC 6 cut(s) 549, 911, 1010, 1019, 1052, 1346
BstNI CCWGG 3 cut(s) 619, 682, 1098
BstNSI RCATGY 1 cut(s) 367
BstPI GGTNACC 1 cut(s) 384
BstSCI CCNGG 3 cut(s) 617, 680, 1096
BstSFI CTRYAG 1 cut(s) 1002
BstSLI GKGCMC 1 cut(s) 1062
BstUI CGCG 1 cut(s) 153
BstV1I GCAGC 6 cut(s) 53, 56, 334, 926, 998, 1039
BstXI CCANNNNNNTGG 1 cut(s) 707
Bsu15I ATCGAT 1 cut(s) 811
BsuRI GGCC 3 cut(s) 623, 699, 1193
BsuTUI ATCGAT 1 cut(s) 811
BtgI CCRYGG 2 cut(s) 546, 1158
BtgZI GCGATG 2 cut(s) 64, 1061
BtsCI GGATG 4 cut(s) 12, 580, 1042, 1116
BtsIMutI CAGTG 3 cut(s) 256, 738, 896
BveI ACCTGC 2 cut(s) 1144, 1345
Cac8I GCNNGC 3 cut(s) 365, 1044, 1141
Cfr13I GGNCC 2 cut(s) 621, 733
ClaI ATCGAT 1 cut(s) 811
CseI GACGC 1 cut(s) 1078
CsiI ACCWGGT 1 cut(s) 680
Csp6I GTAC 5 cut(s) 221, 347, 507, 665, 711
CviAII CATG 4 cut(s) 292, 364, 701, 842
CviQI GTAC 5 cut(s) 221, 347, 507, 665, 711
DdeI CTNAG 7 cut(s) 54, 310, 390, 426, 451, 608, 723
DpnI GATC 6 cut(s) 255, 377, 471, 789, 814, 1128
DpnII GATC 6 cut(s) 253, 375, 469, 787, 812, 1126
DraIII CACNNNGTG 2 cut(s) 684, 742
DrdI GACNNNNNNGTC 1 cut(s) 58
DseDI GACNNNNNNGTC 1 cut(s) 58
EaeI YGGCCR 2 cut(s) 697, 1191
Eam1104I CTCTTC 1 cut(s) 600
EarI CTCTTC 1 cut(s) 600
Ecl136II GAGCTC 1 cut(s) 1349
Eco24I GRGCYC 1 cut(s) 1351
Eco31I GGTCTC 2 cut(s) 161, 853
Eco47I GGWCC 1 cut(s) 733
Eco53kI GAGCTC 1 cut(s) 1349
Eco57I CTGAAG 3 cut(s) 812, 1152, 1313
Eco88I CYCGRG 1 cut(s) 158
Eco91I GGTNACC 1 cut(s) 384
EcoICRI GAGCTC 1 cut(s) 1349
EcoNI CCTNNNNNAGG 1 cut(s) 1241
EcoO65I GGTNACC 1 cut(s) 384
EcoRI GAATTC 1 cut(s) 1253
EcoRII CCWGG 3 cut(s) 617, 680, 1096
EcoT38I GRGCYC 1 cut(s) 1351
FaeI CATG 4 cut(s) 295, 367, 704, 845
FaqI GGGAC 3 cut(s) 461, 1076, 1356
FatI CATG 4 cut(s) 291, 363, 700, 841
FauI CCCGC 2 cut(s) 756, 1333
FbaI TGATCA 1 cut(s) 375
FblI GTMKAC 1 cut(s) 1151
Fnu4HI GCNGC 7 cut(s) 6, 42, 45, 323, 915, 987, 1053
FokI GGATG 3 cut(s) 587, 1049, 1123
FriOI GRGCYC 1 cut(s) 1351
Fsp4HI GCNGC 7 cut(s) 6, 42, 45, 323, 915, 987, 1053
FspBI CTAG 5 cut(s) 326, 561, 1140, 1368, 1375
GluI GCNGC 7 cut(s) 6, 42, 45, 323, 915, 987, 1053
GsuI CTGGAG 1 cut(s) 281
HaeIII GGCC 3 cut(s) 623, 699, 1193
HapII CCGG 2 cut(s) 360, 731
HgaI GACGC 1 cut(s) 1078
Hin1II CATG 4 cut(s) 295, 367, 704, 845
HincII GTYRAC 2 cut(s) 580, 1152
HindII GTYRAC 2 cut(s) 580, 1152
HinfI GANTC 5 cut(s) 612, 659, 1076, 1121, 1153
HpaII CCGG 2 cut(s) 360, 731
HphI GGTGA 4 cut(s) 378, 607, 641, 652
Hpy166II GTNNAC 2 cut(s) 580, 1152
Hpy188I TCNGA 7 cut(s) 51, 611, 787, 792, 1110, 1126, 1218
Hpy188III TCNNGA 7 cut(s) 158, 160, 205, 246, 339, 599, 731
Hpy8I GTNNAC 2 cut(s) 580, 1152
Hpy99I CGWCG 3 cut(s) 340, 935, 1153
HpyAV CCTTC 4 cut(s) 102, 430, 762, 1241
HpyCH4III ACNGT 5 cut(s) 265, 346, 742, 1199, 1214
HpyCH4IV ACGT 3 cut(s) 349, 933, 1148
HpyCH4V TGCA 8 cut(s) 168, 322, 494, 678, 851, 893, 1004, 1066
HpyF10VI GCNNNNNNNGC 6 cut(s) 549, 911, 1010, 1019, 1052, 1346
HpyF3I CTNAG 7 cut(s) 54, 310, 390, 426, 451, 608, 723
HpySE526I ACGT 3 cut(s) 349, 933, 1148
Hsp92II CATG 4 cut(s) 295, 367, 704, 845
Kpn2I TCCGGA 1 cut(s) 730
Ksp22I TGATCA 1 cut(s) 375
Kzo9I GATC 6 cut(s) 253, 375, 469, 787, 812, 1126
LmnI GCTCC 7 cut(s) 300, 372, 548, 733, 994, 1180, 1364
Lsp1109I GCAGC 6 cut(s) 53, 56, 334, 926, 998, 1039
LweI GCATC 2 cut(s) 138, 503
MabI ACCWGGT 1 cut(s) 680
MaeI CTAG 5 cut(s) 326, 561, 1140, 1368, 1375
MaeII ACGT 3 cut(s) 349, 933, 1148
MaeIII GTNAC 3 cut(s) 384, 822, 1225
MalI GATC 6 cut(s) 255, 377, 471, 789, 814, 1128
MbiI CCGCTC 2 cut(s) 543, 763
MboI GATC 6 cut(s) 253, 375, 469, 787, 812, 1126
MboII GAAGA 7 cut(s) 119, 140, 587, 805, 950, 1158, 1294
MfeI CAATTG 1 cut(s) 227
MhlI GDGCHC 2 cut(s) 1062, 1351
MlsI TGGCCA 1 cut(s) 699
MluNI TGGCCA 1 cut(s) 699
MlyI GAGTC 2 cut(s) 668, 1147
MmeI TCCRAC 2 cut(s) 1016, 1156
MnlI CCTC 7 cut(s) 43, 49, 282, 603, 625, 795, 1237
Mox20I TGGCCA 1 cut(s) 699
MroI TCCGGA 1 cut(s) 730
MroXI GAANNNNTTC 1 cut(s) 144
MscI TGGCCA 1 cut(s) 699
MseI TTAA 4 cut(s) 192, 354, 516, 923
MslI CAYNNNNRTG 1 cut(s) 846
Msp20I TGGCCA 1 cut(s) 699
MspCI CTTAAG 1 cut(s) 922
MspI CCGG 2 cut(s) 360, 731
MspR9I CCNGG 3 cut(s) 619, 682, 1098
MunI CAATTG 1 cut(s) 227
MvaI CCWGG 3 cut(s) 619, 682, 1098
MvnI CGCG 1 cut(s) 153
MwoI GCNNNNNNNGC 6 cut(s) 549, 911, 1010, 1019, 1052, 1346
NdeII GATC 6 cut(s) 253, 375, 469, 787, 812, 1126
NheI GCTAGC 1 cut(s) 1139
NlaIII CATG 4 cut(s) 295, 367, 704, 845
NlaIV GGNNCC 2 cut(s) 270, 729
NmuCI GTSAC 2 cut(s) 384, 822
NspI RCATGY 1 cut(s) 367
PaeI GCATGC 1 cut(s) 367
PaeR7I CTCGAG 1 cut(s) 158
PdmI GAANNNNTTC 1 cut(s) 144
PfeI GAWTC 3 cut(s) 612, 1076, 1121
PflMI CCANNNNNTGG 1 cut(s) 742
PkrI GCNGC 7 cut(s) 7, 43, 46, 324, 916, 988, 1054
PleI GAGTC 2 cut(s) 667, 1147
PpsI GAGTC 2 cut(s) 667, 1147
Psp124BI GAGCTC 1 cut(s) 1351
Psp6I CCWGG 3 cut(s) 617, 680, 1096
PspEI GGTNACC 1 cut(s) 384
PspGI CCWGG 3 cut(s) 617, 680, 1096
PspN4I GGNNCC 2 cut(s) 270, 729
PspPI GGNCC 2 cut(s) 621, 733
PsrI GAACNNNNNNTAC 2 cut(s) 703, 735
PstI CTGCAG 1 cut(s) 1006
RsaI GTAC 5 cut(s) 222, 348, 508, 666, 712
RsaNI GTAC 5 cut(s) 221, 347, 507, 665, 711
RseI CAYNNNNRTG 1 cut(s) 846
SacI GAGCTC 1 cut(s) 1351
SalI GTCGAC 1 cut(s) 1150
SaqAI TTAA 4 cut(s) 192, 354, 516, 923
SatI GCNGC 7 cut(s) 6, 42, 45, 323, 915, 987, 1053
Sau3AI GATC 6 cut(s) 253, 375, 469, 787, 812, 1126
Sau96I GGNCC 2 cut(s) 621, 733
SchI GAGTC 2 cut(s) 668, 1147
ScrFI CCNGG 3 cut(s) 619, 682, 1098
SduI GDGCHC 2 cut(s) 1062, 1351
SexAI ACCWGGT 1 cut(s) 680
SfaNI GCATC 2 cut(s) 138, 503
SfcI CTRYAG 1 cut(s) 1002
Sfr274I CTCGAG 1 cut(s) 158
SinI GGWCC 1 cut(s) 733
SlaI CTCGAG 1 cut(s) 158
SmiMI CAYNNNNRTG 1 cut(s) 846
SmlI CTYRAG 2 cut(s) 158, 922
SmoI CTYRAG 2 cut(s) 158, 922
SphI GCATGC 1 cut(s) 367
SsiI CCGC 5 cut(s) 5, 153, 541, 763, 1340
SspMI CTAG 5 cut(s) 326, 561, 1140, 1368, 1375
SstI GAGCTC 1 cut(s) 1351
StyD4I CCNGG 3 cut(s) 617, 680, 1096
TaaI ACNGT 5 cut(s) 265, 346, 742, 1199, 1214
TaiI ACGT 3 cut(s) 352, 936, 1151
TaqI TCGA 4 cut(s) 159, 811, 1151, 1280
TatI WGTACW 1 cut(s) 220
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 3 cut(s) 612, 1076, 1121
Tru1I TTAA 4 cut(s) 192, 354, 516, 923
Tru9I TTAA 4 cut(s) 192, 354, 516, 923
TscAI CASTG 3 cut(s) 263, 745, 903
TseFI GTSAC 2 cut(s) 384, 822
TseI GCWGC 6 cut(s) 41, 44, 322, 914, 986, 1052
Tsp45I GTSAC 2 cut(s) 384, 822
TspDTI ATGAA 3 cut(s) 280, 942, 1331
TspGWI ACGGA 3 cut(s) 359, 535, 1133
TspRI CASTG 3 cut(s) 263, 745, 903
Van91I CCANNNNNTGG 1 cut(s) 742
Vha464I CTTAAG 1 cut(s) 922
VpaK11BI GGWCC 1 cut(s) 733
XagI CCTNNNNNAGG 1 cut(s) 1241
XapI RAATTY 3 cut(s) 415, 564, 1253
XceI RCATGY 1 cut(s) 367
XhoI CTCGAG 1 cut(s) 158
XmiI GTMKAC 1 cut(s) 1151
XmnI GAANNNNTTC 1 cut(s) 144
XspI CTAG 5 cut(s) 326, 561, 1140, 1368, 1375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.