Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-CCHC_4 | PF14392 | 25 - 56 | 1.4e-08 | Zinc knuckle |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 84 |
| AccI | GTMKAC | 1 cut(s) | 27 |
| AciI | CCGC | 2 cut(s) | 135, 247 |
| AcoI | YGGCCR | 1 cut(s) | 223 |
| AcsI | RAATTY | 1 cut(s) | 187 |
| AcyI | GRCGYC | 1 cut(s) | 81 |
| AfaI | GTAC | 1 cut(s) | 104 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 202, 302 |
| AgsI | TTSAA | 2 cut(s) | 278, 547 |
| AluBI | AGCT | 1 cut(s) | 265 |
| AluI | AGCT | 1 cut(s) | 265 |
| Alw21I | GWGCWC | 1 cut(s) | 477 |
| Alw26I | GTCTC | 1 cut(s) | 384 |
| AoxI | GGCC | 2 cut(s) | 214, 223 |
| ApoI | RAATTY | 1 cut(s) | 187 |
| AspLEI | GCGC | 1 cut(s) | 111 |
| AspS9I | GGNCC | 1 cut(s) | 359 |
| AsuC2I | CCSGG | 1 cut(s) | 116 |
| AvaII | GGWCC | 1 cut(s) | 359 |
| BaeGI | GKGCMC | 1 cut(s) | 150 |
| BbsI | GAAGAC | 1 cut(s) | 263 |
| Bbv12I | GWGCWC | 1 cut(s) | 477 |
| BccI | CCATC | 1 cut(s) | 206 |
| BceAI | ACGGC | 1 cut(s) | 210 |
| BclI | TGATCA | 1 cut(s) | 346 |
| BcnI | CCSGG | 1 cut(s) | 116 |
| BcoDI | GTCTC | 1 cut(s) | 384 |
| BfaI | CTAG | 3 cut(s) | 9, 372, 482 |
| BfoI | RGCGCY | 1 cut(s) | 112 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 222 |
| BisI | GCNGC | 1 cut(s) | 247 |
| BlsI | GCNGC | 1 cut(s) | 248 |
| Bme1390I | CCNGG | 1 cut(s) | 116 |
| Bme18I | GGWCC | 1 cut(s) | 359 |
| BmgT120I | GGNCC | 1 cut(s) | 359 |
| BmiI | GGNNCC | 2 cut(s) | 360, 468 |
| BmrFI | CCNGG | 1 cut(s) | 116 |
| BmsI | GCATC | 1 cut(s) | 225 |
| BpiI | GAAGAC | 1 cut(s) | 263 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 223, 255 |
| BpuEI | CTTGAG | 1 cut(s) | 221 |
| BpuMI | CCSGG | 1 cut(s) | 116 |
| BsaBI | GATNNNNATC | 1 cut(s) | 494 |
| BsaHI | GRCGYC | 1 cut(s) | 81 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 86, 116 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 202, 302 |
| Bse8I | GATNNNNATC | 1 cut(s) | 494 |
| BseGI | GGATG | 4 cut(s) | 240, 349, 495, 495 |
| BseJI | GATNNNNATC | 1 cut(s) | 494 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 202, 302 |
| BseRI | GAGGAG | 2 cut(s) | 218, 321 |
| BseSI | GKGCMC | 1 cut(s) | 150 |
| BshFI | GGCC | 2 cut(s) | 216, 225 |
| BsiHKAI | GWGCWC | 1 cut(s) | 477 |
| BsiSI | CCGG | 1 cut(s) | 116 |
| BslFI | GGGAC | 1 cut(s) | 92 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 202, 302 |
| BsmAI | GTCTC | 1 cut(s) | 384 |
| BsmFI | GGGAC | 1 cut(s) | 92 |
| BsmI | GAATGC | 1 cut(s) | 424 |
| BsnI | GGCC | 2 cut(s) | 216, 225 |
| Bsp1286I | GDGCHC | 2 cut(s) | 150, 477 |
| Bsp143I | GATC | 1 cut(s) | 346 |
| BspACI | CCGC | 2 cut(s) | 135, 247 |
| BspANI | GGCC | 2 cut(s) | 216, 225 |
| BspLI | GGNNCC | 2 cut(s) | 360, 468 |
| BssMI | GATC | 1 cut(s) | 346 |
| BssNI | GRCGYC | 1 cut(s) | 81 |
| Bst4CI | ACNGT | 1 cut(s) | 61 |
| BstACI | GRCGYC | 1 cut(s) | 81 |
| BstC8I | GCNNGC | 1 cut(s) | 297 |
| BstDEI | CTNAG | 1 cut(s) | 261 |
| BstF5I | GGATG | 4 cut(s) | 240, 349, 495, 495 |
| BstH2I | RGCGCY | 1 cut(s) | 112 |
| BstHHI | GCGC | 1 cut(s) | 111 |
| BstKTI | GATC | 1 cut(s) | 349 |
| BstMAI | GTCTC | 1 cut(s) | 384 |
| BstMBI | GATC | 1 cut(s) | 346 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 132, 222, 292 |
| BstSCI | CCNGG | 1 cut(s) | 114 |
| BstSLI | GKGCMC | 1 cut(s) | 150 |
| BstV2I | GAAGAC | 1 cut(s) | 263 |
| BsuRI | GGCC | 2 cut(s) | 216, 225 |
| BtgZI | GCGATG | 1 cut(s) | 227 |
| BtsCI | GGATG | 4 cut(s) | 240, 349, 495, 495 |
| BtsI | GCAGTG | 1 cut(s) | 130 |
| BtsIMutI | CAGTG | 1 cut(s) | 130 |
| Cac8I | GCNNGC | 1 cut(s) | 297 |
| CfoI | GCGC | 1 cut(s) | 111 |
| Cfr13I | GGNCC | 1 cut(s) | 359 |
| Csp6I | GTAC | 1 cut(s) | 103 |
| CviAII | CATG | 4 cut(s) | 48, 162, 350, 449 |
| CviJI | RGCY | 4 cut(s) | 216, 225, 265, 295 |
| CviKI_1 | RGCY | 4 cut(s) | 216, 225, 265, 295 |
| CviQI | GTAC | 1 cut(s) | 103 |
| DdeI | CTNAG | 1 cut(s) | 261 |
| DpnI | GATC | 1 cut(s) | 348 |
| DpnII | GATC | 1 cut(s) | 346 |
| EaeI | YGGCCR | 1 cut(s) | 223 |
| Eco47I | GGWCC | 1 cut(s) | 359 |
| FaeI | CATG | 4 cut(s) | 51, 165, 353, 452 |
| FaiI | YATR | 8 cut(s) | 6, 49, 163, 273, 351, 450, 464, 532 |
| FaqI | GGGAC | 1 cut(s) | 92 |
| FatI | CATG | 4 cut(s) | 47, 161, 349, 448 |
| FauI | CCCGC | 1 cut(s) | 128 |
| FbaI | TGATCA | 1 cut(s) | 346 |
| FblI | GTMKAC | 1 cut(s) | 27 |
| Fnu4HI | GCNGC | 1 cut(s) | 247 |
| FokI | GGATG | 4 cut(s) | 247, 356, 482, 502 |
| Fsp4HI | GCNGC | 1 cut(s) | 247 |
| FspBI | CTAG | 3 cut(s) | 9, 372, 482 |
| GlaI | GCGC | 1 cut(s) | 110 |
| GluI | GCNGC | 1 cut(s) | 247 |
| HaeII | RGCGCY | 1 cut(s) | 112 |
| HaeIII | GGCC | 2 cut(s) | 216, 225 |
| HapII | CCGG | 1 cut(s) | 116 |
| HhaI | GCGC | 1 cut(s) | 111 |
| Hin1I | GRCGYC | 1 cut(s) | 81 |
| Hin1II | CATG | 4 cut(s) | 51, 165, 353, 452 |
| Hin6I | GCGC | 1 cut(s) | 109 |
| HinP1I | GCGC | 1 cut(s) | 109 |
| HincII | GTYRAC | 2 cut(s) | 57, 536 |
| HindII | GTYRAC | 2 cut(s) | 57, 536 |
| HpaII | CCGG | 1 cut(s) | 116 |
| Hpy166II | GTNNAC | 3 cut(s) | 28, 57, 536 |
| Hpy188I | TCNGA | 1 cut(s) | 177 |
| Hpy8I | GTNNAC | 3 cut(s) | 28, 57, 536 |
| Hpy99I | CGWCG | 2 cut(s) | 86, 255 |
| HpyAV | CCTTC | 1 cut(s) | 227 |
| HpyCH4III | ACNGT | 1 cut(s) | 61 |
| HpyCH4IV | ACGT | 1 cut(s) | 81 |
| HpyCH4V | TGCA | 5 cut(s) | 165, 286, 401, 422, 448 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 132, 222, 292 |
| HpyF3I | CTNAG | 1 cut(s) | 261 |
| HpySE526I | ACGT | 1 cut(s) | 81 |
| Hsp92I | GRCGYC | 1 cut(s) | 81 |
| Hsp92II | CATG | 4 cut(s) | 51, 165, 353, 452 |
| HspAI | GCGC | 1 cut(s) | 109 |
| Ksp22I | TGATCA | 1 cut(s) | 346 |
| Kzo9I | GATC | 1 cut(s) | 346 |
| LmnI | GCTCC | 1 cut(s) | 391 |
| LpnPI | CCDG | 7 cut(s) | 129, 136, 251, 309, 396, 408, 483 |
| LweI | GCATC | 1 cut(s) | 225 |
| MaeI | CTAG | 3 cut(s) | 9, 372, 482 |
| MaeII | ACGT | 1 cut(s) | 81 |
| MaeIII | GTNAC | 1 cut(s) | 513 |
| MalI | GATC | 1 cut(s) | 348 |
| MboI | GATC | 1 cut(s) | 346 |
| MboII | GAAGA | 3 cut(s) | 150, 268, 559 |
| MhlI | GDGCHC | 2 cut(s) | 150, 477 |
| MluCI | AATT | 2 cut(s) | 187, 281 |
| MspI | CCGG | 1 cut(s) | 116 |
| MspR9I | CCNGG | 1 cut(s) | 116 |
| Mva1269I | GAATGC | 1 cut(s) | 424 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 132, 222, 292 |
| NciI | CCSGG | 1 cut(s) | 116 |
| NdeII | GATC | 1 cut(s) | 346 |
| NlaIII | CATG | 4 cut(s) | 51, 165, 353, 452 |
| NlaIV | GGNNCC | 2 cut(s) | 360, 468 |
| PctI | GAATGC | 1 cut(s) | 424 |
| PfoI | TCCNGGA | 1 cut(s) | 114 |
| PkrI | GCNGC | 1 cut(s) | 248 |
| PspN4I | GGNNCC | 2 cut(s) | 360, 468 |
| PspPI | GGNCC | 1 cut(s) | 359 |
| RsaI | GTAC | 1 cut(s) | 104 |
| RsaNI | GTAC | 1 cut(s) | 103 |
| SatI | GCNGC | 1 cut(s) | 247 |
| Sau3AI | GATC | 1 cut(s) | 346 |
| Sau96I | GGNCC | 1 cut(s) | 359 |
| ScrFI | CCNGG | 1 cut(s) | 116 |
| SduI | GDGCHC | 2 cut(s) | 150, 477 |
| SetI | ASST | 4 cut(s) | 84, 99, 267, 472 |
| SfaNI | GCATC | 1 cut(s) | 225 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 222 |
| SinI | GGWCC | 1 cut(s) | 359 |
| SmlI | CTYRAG | 1 cut(s) | 200 |
| SmoI | CTYRAG | 1 cut(s) | 200 |
| Sse9I | AATT | 2 cut(s) | 187, 281 |
| SsiI | CCGC | 2 cut(s) | 135, 247 |
| SspI | AATATT | 1 cut(s) | 543 |
| SspMI | CTAG | 3 cut(s) | 9, 372, 482 |
| StyD4I | CCNGG | 1 cut(s) | 114 |
| TaaI | ACNGT | 1 cut(s) | 61 |
| TaiI | ACGT | 1 cut(s) | 84 |
| TaqI | TCGA | 1 cut(s) | 230 |
| TasI | AATT | 2 cut(s) | 187, 281 |
| TauI | GCSGC | 1 cut(s) | 249 |
| TscAI | CASTG | 1 cut(s) | 137 |
| TspDTI | ATGAA | 3 cut(s) | 150, 506, 524 |
| TspGWI | ACGGA | 2 cut(s) | 268, 351 |
| TspRI | CASTG | 1 cut(s) | 137 |
| VpaK11BI | GGWCC | 1 cut(s) | 359 |
| XapI | RAATTY | 1 cut(s) | 187 |
| XmiI | GTMKAC | 1 cut(s) | 27 |
| XspI | CTAG | 3 cut(s) | 9, 372, 482 |
| ZraI | GACGTC | 1 cut(s) | 82 |