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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 73 |
| Acc36I | ACCTGC | 1 cut(s) | 73 |
| AccI | GTMKAC | 1 cut(s) | 206 |
| AcsI | RAATTY | 1 cut(s) | 474 |
| AdeI | CACNNNGTG | 1 cut(s) | 284 |
| AfaI | GTAC | 2 cut(s) | 93, 99 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 314 |
| AflII | CTTAAG | 1 cut(s) | 431 |
| AflIII | ACRYGT | 1 cut(s) | 467 |
| AgsI | TTSAA | 1 cut(s) | 451 |
| AhlI | ACTAGT | 1 cut(s) | 94 |
| AjnI | CCWGG | 1 cut(s) | 292 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 296, 328 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 377, 409 |
| AluBI | AGCT | 3 cut(s) | 263, 440, 517 |
| AluI | AGCT | 3 cut(s) | 263, 440, 517 |
| Alw21I | GWGCWC | 2 cut(s) | 114, 493 |
| Alw26I | GTCTC | 1 cut(s) | 412 |
| AoxI | GGCC | 1 cut(s) | 44 |
| ApeKI | GCWGC | 4 cut(s) | 56, 247, 440, 461 |
| ApoI | RAATTY | 1 cut(s) | 474 |
| AspS9I | GGNCC | 1 cut(s) | 13 |
| AvaII | GGWCC | 1 cut(s) | 13 |
| AxyI | CCTNAGG | 1 cut(s) | 456 |
| BbsI | GAAGAC | 1 cut(s) | 110 |
| Bbv12I | GWGCWC | 2 cut(s) | 114, 493 |
| BbvI | GCAGC | 4 cut(s) | 43, 259, 427, 473 |
| BccI | CCATC | 2 cut(s) | 154, 346 |
| BceAI | ACGGC | 1 cut(s) | 187 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 91, 125 |
| BciT130I | CCWGG | 1 cut(s) | 294 |
| BciVI | GTATCC | 1 cut(s) | 182 |
| BcoDI | GTCTC | 1 cut(s) | 412 |
| BcuI | ACTAGT | 1 cut(s) | 94 |
| BfaI | CTAG | 1 cut(s) | 95 |
| BfmI | CTRYAG | 1 cut(s) | 207 |
| BfrI | CTTAAG | 1 cut(s) | 431 |
| BfuAI | ACCTGC | 1 cut(s) | 73 |
| BfuI | GTATCC | 1 cut(s) | 182 |
| BisI | GCNGC | 4 cut(s) | 57, 248, 441, 462 |
| BlsI | GCNGC | 4 cut(s) | 58, 249, 442, 463 |
| BmcAI | AGTACT | 1 cut(s) | 93 |
| Bme1390I | CCNGG | 1 cut(s) | 294 |
| Bme18I | GGWCC | 1 cut(s) | 13 |
| BmgT120I | GGNCC | 1 cut(s) | 13 |
| BmrFI | CCNGG | 1 cut(s) | 294 |
| BmsI | GCATC | 2 cut(s) | 43, 417 |
| BoxI | GACNNNNGTC | 1 cut(s) | 156 |
| BpiI | GAAGAC | 1 cut(s) | 110 |
| BpmI | CTGGAG | 2 cut(s) | 276, 384 |
| Bpu10I | CCTNAGC | 1 cut(s) | 264 |
| Bsa29I | ATCGAT | 1 cut(s) | 117 |
| BsaAI | YACGTR | 1 cut(s) | 470 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 314 |
| Bse1I | ACTGG | 4 cut(s) | 16, 23, 195, 401 |
| Bse21I | CCTNAGG | 1 cut(s) | 456 |
| Bse3DI | GCAATG | 1 cut(s) | 11 |
| BseBI | CCWGG | 1 cut(s) | 294 |
| BseCI | ATCGAT | 1 cut(s) | 117 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 314 |
| BseMI | GCAATG | 1 cut(s) | 11 |
| BseMII | CTCAG | 1 cut(s) | 278 |
| BseNI | ACTGG | 4 cut(s) | 16, 23, 195, 401 |
| BseRI | GAGGAG | 1 cut(s) | 265 |
| BseXI | GCAGC | 4 cut(s) | 43, 259, 427, 473 |
| BshFI | GGCC | 1 cut(s) | 46 |
| BshVI | ATCGAT | 1 cut(s) | 117 |
| BsiHKAI | GWGCWC | 2 cut(s) | 114, 493 |
| BslFI | GGGAC | 1 cut(s) | 144 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 314 |
| BsmAI | GTCTC | 1 cut(s) | 412 |
| BsmBI | CGTCTC | 1 cut(s) | 412 |
| BsmFI | GGGAC | 1 cut(s) | 144 |
| BsnI | GGCC | 1 cut(s) | 46 |
| Bsp1286I | GDGCHC | 2 cut(s) | 114, 493 |
| BspANI | GGCC | 1 cut(s) | 46 |
| BspCNI | CTCAG | 1 cut(s) | 277 |
| BspDI | ATCGAT | 1 cut(s) | 117 |
| BspMI | ACCTGC | 1 cut(s) | 73 |
| BspTI | CTTAAG | 1 cut(s) | 431 |
| BsrDI | GCAATG | 1 cut(s) | 11 |
| BsrI | ACTGG | 4 cut(s) | 16, 23, 195, 401 |
| Bst2UI | CCWGG | 1 cut(s) | 294 |
| Bst4CI | ACNGT | 3 cut(s) | 109, 133, 139 |
| BstAFI | CTTAAG | 1 cut(s) | 431 |
| BstBAI | YACGTR | 1 cut(s) | 470 |
| BstC8I | GCNNGC | 1 cut(s) | 438 |
| BstDEI | CTNAG | 3 cut(s) | 264, 281, 456 |
| BstMAI | GTCTC | 1 cut(s) | 412 |
| BstNI | CCWGG | 1 cut(s) | 294 |
| BstNSI | RCATGY | 1 cut(s) | 32 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 156 |
| BstSCI | CCNGG | 1 cut(s) | 292 |
| BstSFI | CTRYAG | 1 cut(s) | 207 |
| BstV1I | GCAGC | 4 cut(s) | 43, 259, 427, 473 |
| BstV2I | GAAGAC | 1 cut(s) | 110 |
| Bsu15I | ATCGAT | 1 cut(s) | 117 |
| Bsu36I | CCTNAGG | 1 cut(s) | 456 |
| BsuI | GTATCC | 1 cut(s) | 182 |
| BsuRI | GGCC | 1 cut(s) | 46 |
| BsuTUI | ATCGAT | 1 cut(s) | 117 |
| BtsIMutI | CAGTG | 2 cut(s) | 30, 114 |
| BveI | ACCTGC | 1 cut(s) | 73 |
| Cac8I | GCNNGC | 1 cut(s) | 438 |
| Cfr13I | GGNCC | 1 cut(s) | 13 |
| ClaI | ATCGAT | 1 cut(s) | 117 |
| Csp6I | GTAC | 2 cut(s) | 92, 98 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 66, 101 |
| CviAII | CATG | 3 cut(s) | 29, 127, 217 |
| CviJI | RGCY | 7 cut(s) | 46, 74, 263, 269, 440, 454, 517 |
| CviKI_1 | RGCY | 7 cut(s) | 46, 74, 263, 269, 440, 454, 517 |
| CviQI | GTAC | 2 cut(s) | 92, 98 |
| DdeI | CTNAG | 3 cut(s) | 264, 281, 456 |
| DraIII | CACNNNGTG | 1 cut(s) | 284 |
| Eco147I | AGGCCT | 1 cut(s) | 46 |
| Eco47I | GGWCC | 1 cut(s) | 13 |
| Eco81I | CCTNAGG | 1 cut(s) | 456 |
| EcoRII | CCWGG | 1 cut(s) | 292 |
| Esp3I | CGTCTC | 1 cut(s) | 412 |
| FaeI | CATG | 3 cut(s) | 32, 130, 220 |
| FaiI | YATR | 5 cut(s) | 30, 128, 200, 218, 357 |
| FaqI | GGGAC | 1 cut(s) | 144 |
| FatI | CATG | 3 cut(s) | 28, 126, 216 |
| FblI | GTMKAC | 1 cut(s) | 206 |
| Fnu4HI | GCNGC | 4 cut(s) | 57, 248, 441, 462 |
| Fsp4HI | GCNGC | 4 cut(s) | 57, 248, 441, 462 |
| FspBI | CTAG | 1 cut(s) | 95 |
| GluI | GCNGC | 4 cut(s) | 57, 248, 441, 462 |
| GsuI | CTGGAG | 2 cut(s) | 276, 384 |
| HaeIII | GGCC | 1 cut(s) | 46 |
| Hin1II | CATG | 3 cut(s) | 32, 130, 220 |
| HincII | GTYRAC | 2 cut(s) | 367, 376 |
| HindII | GTYRAC | 2 cut(s) | 367, 376 |
| HindIII | AAGCTT | 1 cut(s) | 515 |
| HinfI | GANTC | 1 cut(s) | 68 |
| HpaI | GTTAAC | 1 cut(s) | 367 |
| Hpy166II | GTNNAC | 5 cut(s) | 207, 256, 367, 376, 396 |
| Hpy188I | TCNGA | 4 cut(s) | 13, 151, 303, 343 |
| Hpy188III | TCNNGA | 1 cut(s) | 65 |
| Hpy8I | GTNNAC | 5 cut(s) | 207, 256, 367, 376, 396 |
| HpyAV | CCTTC | 1 cut(s) | 380 |
| HpyCH4III | ACNGT | 3 cut(s) | 109, 133, 139 |
| HpyCH4IV | ACGT | 1 cut(s) | 469 |
| HpyCH4V | TGCA | 6 cut(s) | 4, 28, 82, 220, 247, 443 |
| HpyF3I | CTNAG | 3 cut(s) | 264, 281, 456 |
| HpySE526I | ACGT | 1 cut(s) | 469 |
| Hsp92II | CATG | 3 cut(s) | 32, 130, 220 |
| KspAI | GTTAAC | 1 cut(s) | 367 |
| Lsp1109I | GCAGC | 4 cut(s) | 43, 259, 427, 473 |
| LweI | GCATC | 2 cut(s) | 43, 417 |
| MaeI | CTAG | 1 cut(s) | 95 |
| MaeII | ACGT | 1 cut(s) | 469 |
| MaeIII | GTNAC | 2 cut(s) | 18, 133 |
| MboII | GAAGA | 1 cut(s) | 115 |
| MhlI | GDGCHC | 2 cut(s) | 114, 493 |
| MluCI | AATT | 1 cut(s) | 474 |
| MlyI | GAGTC | 1 cut(s) | 77 |
| MmeI | TCCRAC | 1 cut(s) | 166 |
| MnlI | CCTC | 5 cut(s) | 283, 286, 300, 318, 376 |
| MseI | TTAA | 2 cut(s) | 366, 432 |
| MspCI | CTTAAG | 1 cut(s) | 431 |
| MspR9I | CCNGG | 1 cut(s) | 294 |
| MvaI | CCWGG | 1 cut(s) | 294 |
| NlaIII | CATG | 3 cut(s) | 32, 130, 220 |
| NspI | RCATGY | 1 cut(s) | 32 |
| PaqCI | CACCTGC | 1 cut(s) | 73 |
| PceI | AGGCCT | 1 cut(s) | 46 |
| PkrI | GCNGC | 4 cut(s) | 58, 249, 442, 463 |
| PleI | GAGTC | 1 cut(s) | 76 |
| PpsI | GAGTC | 1 cut(s) | 76 |
| Ppu21I | YACGTR | 1 cut(s) | 470 |
| PshAI | GACNNNNGTC | 1 cut(s) | 156 |
| Psp6I | CCWGG | 1 cut(s) | 292 |
| PspGI | CCWGG | 1 cut(s) | 292 |
| PspPI | GGNCC | 1 cut(s) | 13 |
| RsaI | GTAC | 2 cut(s) | 93, 99 |
| RsaNI | GTAC | 2 cut(s) | 92, 98 |
| SaqAI | TTAA | 2 cut(s) | 366, 432 |
| SatI | GCNGC | 4 cut(s) | 57, 248, 441, 462 |
| Sau96I | GGNCC | 1 cut(s) | 13 |
| ScaI | AGTACT | 1 cut(s) | 93 |
| SchI | GAGTC | 1 cut(s) | 77 |
| ScrFI | CCNGG | 1 cut(s) | 294 |
| SduI | GDGCHC | 2 cut(s) | 114, 493 |
| SetI | ASST | 8 cut(s) | 87, 237, 265, 298, 310, 442, 472, 519 |
| SfaNI | GCATC | 2 cut(s) | 43, 417 |
| SfcI | CTRYAG | 1 cut(s) | 207 |
| SinI | GGWCC | 1 cut(s) | 13 |
| SmlI | CTYRAG | 1 cut(s) | 431 |
| SmoI | CTYRAG | 1 cut(s) | 431 |
| SpeI | ACTAGT | 1 cut(s) | 94 |
| Sse9I | AATT | 1 cut(s) | 474 |
| SseBI | AGGCCT | 1 cut(s) | 46 |
| SspMI | CTAG | 1 cut(s) | 95 |
| StuI | AGGCCT | 1 cut(s) | 46 |
| StyD4I | CCNGG | 1 cut(s) | 292 |
| TaaI | ACNGT | 3 cut(s) | 109, 133, 139 |
| TaiI | ACGT | 1 cut(s) | 472 |
| TaqI | TCGA | 1 cut(s) | 117 |
| TasI | AATT | 1 cut(s) | 474 |
| TatI | WGTACW | 1 cut(s) | 91 |
| Tru1I | TTAA | 2 cut(s) | 366, 432 |
| Tru9I | TTAA | 2 cut(s) | 366, 432 |
| TscAI | CASTG | 2 cut(s) | 30, 114 |
| TseI | GCWGC | 4 cut(s) | 56, 247, 440, 461 |
| TspRI | CASTG | 2 cut(s) | 30, 114 |
| Vha464I | CTTAAG | 1 cut(s) | 431 |
| VpaK11BI | GGWCC | 1 cut(s) | 13 |
| XapI | RAATTY | 1 cut(s) | 474 |
| XceI | RCATGY | 1 cut(s) | 32 |
| XmiI | GTMKAC | 1 cut(s) | 206 |
| XspI | CTAG | 1 cut(s) | 95 |
| ZrmI | AGTACT | 1 cut(s) | 93 |