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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 447 |
| Acc36I | ACCTGC | 1 cut(s) | 564 |
| AccB1I | GGYRCC | 3 cut(s) | 4, 227, 439 |
| AciI | CCGC | 1 cut(s) | 290 |
| AcsI | RAATTY | 3 cut(s) | 38, 210, 492 |
| AfaI | GTAC | 1 cut(s) | 578 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 503, 554 |
| AflIII | ACRYGT | 2 cut(s) | 322, 579 |
| AgsI | TTSAA | 3 cut(s) | 215, 284, 605 |
| AhlI | ACTAGT | 1 cut(s) | 365 |
| AluBI | AGCT | 2 cut(s) | 396, 587 |
| AluI | AGCT | 2 cut(s) | 396, 587 |
| Ama87I | CYCGRG | 1 cut(s) | 501 |
| AoxI | GGCC | 1 cut(s) | 258 |
| ApoI | RAATTY | 3 cut(s) | 38, 210, 492 |
| AseI | ATTAAT | 2 cut(s) | 513, 528 |
| AspLEI | GCGC | 1 cut(s) | 133 |
| AspS9I | GGNCC | 2 cut(s) | 259, 487 |
| AsuHPI | GGTGA | 1 cut(s) | 98 |
| AvaI | CYCGRG | 1 cut(s) | 501 |
| AvaII | GGWCC | 1 cut(s) | 487 |
| BaeGI | GKGCMC | 1 cut(s) | 9 |
| BanI | GGYRCC | 3 cut(s) | 4, 227, 439 |
| BbvCI | CCTCAGC | 1 cut(s) | 408 |
| BceAI | ACGGC | 1 cut(s) | 322 |
| BclI | TGATCA | 1 cut(s) | 103 |
| BcuI | ACTAGT | 1 cut(s) | 365 |
| BfaI | CTAG | 2 cut(s) | 366, 393 |
| BfoI | RGCGCY | 1 cut(s) | 134 |
| BfuAI | ACCTGC | 1 cut(s) | 564 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 266 |
| Bme18I | GGWCC | 1 cut(s) | 487 |
| BmeT110I | CYCGRG | 1 cut(s) | 501 |
| BmgT120I | GGNCC | 2 cut(s) | 259, 487 |
| BmiI | GGNNCC | 5 cut(s) | 6, 229, 414, 420, 441 |
| BmsI | GCATC | 1 cut(s) | 298 |
| Bpu10I | CCTNAGC | 1 cut(s) | 408 |
| BpuEI | CTTGAG | 1 cut(s) | 436 |
| BsaWI | WCCGGW | 1 cut(s) | 538 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 503, 554 |
| Bse1I | ACTGG | 2 cut(s) | 270, 422 |
| Bse3DI | GCAATG | 1 cut(s) | 312 |
| BseGI | GGATG | 3 cut(s) | 313, 337, 391 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 503, 554 |
| BseMI | GCAATG | 1 cut(s) | 312 |
| BseMII | CTCAG | 1 cut(s) | 399 |
| BseNI | ACTGG | 2 cut(s) | 270, 422 |
| BseRI | GAGGAG | 5 cut(s) | 314, 389, 425, 497, 537 |
| BseSI | GKGCMC | 1 cut(s) | 9 |
| BsgI | GTGCAG | 2 cut(s) | 53, 273 |
| BshFI | GGCC | 1 cut(s) | 260 |
| BshNI | GGYRCC | 3 cut(s) | 4, 227, 439 |
| BsiHKCI | CYCGRG | 1 cut(s) | 501 |
| BsiSI | CCGG | 2 cut(s) | 416, 539 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 503, 554 |
| BsnI | GGCC | 1 cut(s) | 260 |
| BsoBI | CYCGRG | 1 cut(s) | 501 |
| Bsp1286I | GDGCHC | 1 cut(s) | 9 |
| Bsp143I | GATC | 2 cut(s) | 103, 472 |
| BspACI | CCGC | 1 cut(s) | 290 |
| BspANI | GGCC | 1 cut(s) | 260 |
| BspCNI | CTCAG | 1 cut(s) | 400 |
| BspHI | TCATGA | 1 cut(s) | 142 |
| BspLI | GGNNCC | 5 cut(s) | 6, 229, 414, 420, 441 |
| BspMI | ACCTGC | 1 cut(s) | 564 |
| BspT107I | GGYRCC | 3 cut(s) | 4, 227, 439 |
| BsrDI | GCAATG | 1 cut(s) | 312 |
| BsrI | ACTGG | 2 cut(s) | 270, 422 |
| BssMI | GATC | 2 cut(s) | 103, 472 |
| Bst6I | CTCTTC | 1 cut(s) | 279 |
| BstC8I | GCNNGC | 1 cut(s) | 78 |
| BstDEI | CTNAG | 1 cut(s) | 408 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 501, 552 |
| BstF5I | GGATG | 3 cut(s) | 313, 337, 391 |
| BstH2I | RGCGCY | 1 cut(s) | 134 |
| BstHHI | GCGC | 1 cut(s) | 133 |
| BstKTI | GATC | 2 cut(s) | 106, 475 |
| BstMBI | GATC | 2 cut(s) | 103, 472 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 236, 266 |
| BstNSI | RCATGY | 1 cut(s) | 583 |
| BstSLI | GKGCMC | 1 cut(s) | 9 |
| BsuRI | GGCC | 1 cut(s) | 260 |
| BtsCI | GGATG | 3 cut(s) | 313, 337, 391 |
| BtsI | GCAGTG | 1 cut(s) | 261 |
| BtsIMutI | CAGTG | 1 cut(s) | 261 |
| BveI | ACCTGC | 1 cut(s) | 564 |
| Cac8I | GCNNGC | 1 cut(s) | 78 |
| CciI | TCATGA | 1 cut(s) | 142 |
| CfoI | GCGC | 1 cut(s) | 133 |
| Cfr13I | GGNCC | 2 cut(s) | 259, 487 |
| Csp6I | GTAC | 1 cut(s) | 577 |
| CviAII | CATG | 3 cut(s) | 143, 431, 580 |
| CviJI | RGCY | 7 cut(s) | 80, 260, 337, 396, 407, 415, 587 |
| CviKI_1 | RGCY | 7 cut(s) | 80, 260, 337, 396, 407, 415, 587 |
| CviQI | GTAC | 1 cut(s) | 577 |
| DdeI | CTNAG | 1 cut(s) | 408 |
| DpnI | GATC | 2 cut(s) | 105, 474 |
| DpnII | GATC | 2 cut(s) | 103, 472 |
| Eam1104I | CTCTTC | 1 cut(s) | 279 |
| EarI | CTCTTC | 1 cut(s) | 279 |
| Eco47I | GGWCC | 1 cut(s) | 487 |
| Eco88I | CYCGRG | 1 cut(s) | 501 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 501, 552 |
| EcoRI | GAATTC | 1 cut(s) | 210 |
| FaeI | CATG | 3 cut(s) | 146, 434, 583 |
| FaiI | YATR | 8 cut(s) | 144, 207, 296, 371, 432, 447, 581, 613 |
| FatI | CATG | 3 cut(s) | 142, 430, 579 |
| FbaI | TGATCA | 1 cut(s) | 103 |
| FokI | GGATG | 3 cut(s) | 320, 344, 398 |
| FspBI | CTAG | 2 cut(s) | 366, 393 |
| GlaI | GCGC | 1 cut(s) | 132 |
| HaeII | RGCGCY | 1 cut(s) | 134 |
| HaeIII | GGCC | 1 cut(s) | 260 |
| HapII | CCGG | 2 cut(s) | 416, 539 |
| HhaI | GCGC | 1 cut(s) | 133 |
| Hin1II | CATG | 3 cut(s) | 146, 434, 583 |
| Hin6I | GCGC | 1 cut(s) | 131 |
| HinP1I | GCGC | 1 cut(s) | 131 |
| HincII | GTYRAC | 1 cut(s) | 162 |
| HindII | GTYRAC | 1 cut(s) | 162 |
| HinfI | GANTC | 2 cut(s) | 389, 535 |
| HpaII | CCGG | 2 cut(s) | 416, 539 |
| HphI | GGTGA | 1 cut(s) | 98 |
| Hpy166II | GTNNAC | 1 cut(s) | 162 |
| Hpy188I | TCNGA | 5 cut(s) | 103, 477, 510, 523, 534 |
| Hpy188III | TCNNGA | 4 cut(s) | 59, 143, 198, 461 |
| Hpy8I | GTNNAC | 1 cut(s) | 162 |
| HpyCH4IV | ACGT | 2 cut(s) | 55, 322 |
| HpyCH4V | TGCA | 3 cut(s) | 34, 254, 568 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 236, 266 |
| HpyF3I | CTNAG | 1 cut(s) | 408 |
| HpySE526I | ACGT | 2 cut(s) | 55, 322 |
| Hsp92II | CATG | 3 cut(s) | 146, 434, 583 |
| HspAI | GCGC | 1 cut(s) | 131 |
| Ksp22I | TGATCA | 1 cut(s) | 103 |
| Kzo9I | GATC | 2 cut(s) | 103, 472 |
| LmnI | GCTCC | 1 cut(s) | 412 |
| LweI | GCATC | 1 cut(s) | 298 |
| MaeI | CTAG | 2 cut(s) | 366, 393 |
| MaeII | ACGT | 2 cut(s) | 55, 322 |
| MaeIII | GTNAC | 1 cut(s) | 541 |
| MalI | GATC | 2 cut(s) | 105, 474 |
| MboI | GATC | 2 cut(s) | 103, 472 |
| MboII | GAAGA | 1 cut(s) | 296 |
| MfeI | CAATTG | 1 cut(s) | 347 |
| MhlI | GDGCHC | 1 cut(s) | 9 |
| MluCI | AATT | 8 cut(s) | 38, 210, 247, 347, 492, 514, 525, 563 |
| MlyI | GAGTC | 1 cut(s) | 529 |
| MmeI | TCCRAC | 2 cut(s) | 108, 285 |
| MseI | TTAA | 3 cut(s) | 42, 513, 528 |
| MslI | CAYNNNNRTG | 1 cut(s) | 368 |
| MspI | CCGG | 2 cut(s) | 416, 539 |
| MunI | CAATTG | 1 cut(s) | 347 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 236, 266 |
| NdeII | GATC | 2 cut(s) | 103, 472 |
| NlaIII | CATG | 3 cut(s) | 146, 434, 583 |
| NlaIV | GGNNCC | 5 cut(s) | 6, 229, 414, 420, 441 |
| NspI | RCATGY | 1 cut(s) | 583 |
| PaeR7I | CTCGAG | 1 cut(s) | 501 |
| PagI | TCATGA | 1 cut(s) | 142 |
| PciI | ACATGT | 1 cut(s) | 579 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 52 |
| PfeI | GAWTC | 1 cut(s) | 389 |
| PleI | GAGTC | 1 cut(s) | 529 |
| PpsI | GAGTC | 1 cut(s) | 529 |
| PscI | ACATGT | 1 cut(s) | 579 |
| PshBI | ATTAAT | 2 cut(s) | 513, 528 |
| PsiI | TTATAA | 1 cut(s) | 447 |
| PspN4I | GGNNCC | 5 cut(s) | 6, 229, 414, 420, 441 |
| PspPI | GGNCC | 2 cut(s) | 259, 487 |
| PspXI | VCTCGAGB | 1 cut(s) | 501 |
| RsaI | GTAC | 1 cut(s) | 578 |
| RsaNI | GTAC | 1 cut(s) | 577 |
| RseI | CAYNNNNRTG | 1 cut(s) | 368 |
| SaqAI | TTAA | 3 cut(s) | 42, 513, 528 |
| Sau3AI | GATC | 2 cut(s) | 103, 472 |
| Sau96I | GGNCC | 2 cut(s) | 259, 487 |
| SchI | GAGTC | 1 cut(s) | 529 |
| SduI | GDGCHC | 1 cut(s) | 9 |
| SetI | ASST | 7 cut(s) | 58, 150, 325, 398, 508, 578, 589 |
| SfaNI | GCATC | 1 cut(s) | 298 |
| Sfr274I | CTCGAG | 1 cut(s) | 501 |
| SinI | GGWCC | 1 cut(s) | 487 |
| SlaI | CTCGAG | 1 cut(s) | 501 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 368 |
| SmlI | CTYRAG | 3 cut(s) | 15, 451, 501 |
| SmoI | CTYRAG | 3 cut(s) | 15, 451, 501 |
| SpeI | ACTAGT | 1 cut(s) | 365 |
| Sse9I | AATT | 8 cut(s) | 38, 210, 247, 347, 492, 514, 525, 563 |
| SsiI | CCGC | 1 cut(s) | 290 |
| SspI | AATATT | 1 cut(s) | 223 |
| SspMI | CTAG | 2 cut(s) | 366, 393 |
| TaiI | ACGT | 2 cut(s) | 58, 325 |
| TaqI | TCGA | 3 cut(s) | 67, 155, 502 |
| TasI | AATT | 8 cut(s) | 38, 210, 247, 347, 492, 514, 525, 563 |
| TfiI | GAWTC | 1 cut(s) | 389 |
| Tru1I | TTAA | 3 cut(s) | 42, 513, 528 |
| Tru9I | TTAA | 3 cut(s) | 42, 513, 528 |
| TscAI | CASTG | 1 cut(s) | 261 |
| TspDTI | ATGAA | 2 cut(s) | 131, 419 |
| TspRI | CASTG | 1 cut(s) | 261 |
| VpaK11BI | GGWCC | 1 cut(s) | 487 |
| VspI | ATTAAT | 2 cut(s) | 513, 528 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 501, 552 |
| XapI | RAATTY | 3 cut(s) | 38, 210, 492 |
| XceI | RCATGY | 1 cut(s) | 583 |
| XhoI | CTCGAG | 1 cut(s) | 501 |
| XspI | CTAG | 2 cut(s) | 366, 393 |