Rorug03G0187000

AP2-like ethylene-responsive transcription factor

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
16240870 .. 16253410
12541 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0187000.1

Sequence Viewer

Length: 2469 bp
ATGGCGGCGATCGGAGGTCCACCACCCTCTGCCTCTTGCTCGACAACACCTCCTCCTTCTCTCATCTTTGCCGGAAAGTCTTCGTATGATTCTGATTCGCCTTCTTCTTTAACTGTTGCTGCTTCAAAGAAAGTTCTTGTTCCTGGAGGTCCAACCGATGGCTCTCCCCCTTTGACAGAGCAATTGGAAGCTCCCAGCACAGATTCAGAGGATCCTCAGGTGCTTGAGGATGTAGACAGTGTAACTATGGAAGATGAGATTGTTGATGATGAAGCAATTTCTTCGTTAGACGTGGGCAGTGTTGATGATGATAAAACCAAGGTTGAGGAAACACCTAGTCTTTTAAAAGGGACAGCAAGTACTGCTCCAAAGTCAATTCCACCACCTGGCACTGGGCAAAAAATATATGAAATAGATCCACTTTTGAAGGGCTTCCGTGATCATTTGGATTACCGATATGGACAATACAAAAGGTTGCGTGCGGAAATTGACAAGTATGAAGGTGGTTTGGAGGTGTTTTCTCGTGGCTATGAGAAGTTTGGGTTCACACGCAGTGCCACAGGTATCACTTATAGGGAGTGGGCACCTGGAGCTAAGTCCGCATCATTAATTGGAGATTTCAACAATTGGAATATGAATGCGGATGTGATGACTCGGAATGAATTTGGGGTCTGGGAGATCTTTTTGCCAAACAATGCAGATGGTTCACCCGCAATTCCGCATGGTTCTCGAGTGAAGATCCGTATGGATACTCCTTCAGGTGTCAAAGACTCAATTCCTGCTTGGATCAAGTTTTCGGTACAGGCTCCTAATGAAATCCCATACAATGGAATATACTATGATCCTCCAGAAGAGGAGAAGTATGTATTTCAACATCCTCAGCCAAAGAGACCTCAATCGCTCCGCATTTATGAGGCACATGTTGGAATGAGTAGCACAGAGCCAAAAATTAACACATATGCTGAATTCAGAGATGATGTGCTACCACGCATTAAAAAGCTTGGTTACAATGCTGTTCAGCTCATGGCTATTCAGGAGCATTCCTACTATGCCAGCTTTGGGTACCATGTCACCAATTTTTTTGCACCTAGCAGCCGATGTGGAACGCCTGATGATCTGAAATCTCTGATAGATAGAGCTCATGAACTTGGTCTGCTTGTACTCATGGATATTGTTCACAGCCATGTATCAAATAATACGTTGGATGGGCTGAACATGTTTGATGGAACCGATAGTCACTACTTCCACTCTGGGTCCCGAGGATATCATTGGATGTGGGATTCTCGCCTTTTCAATTATGGAAGTTGGGAGGTTTTGAGGTATCTTCTCTCAAATGCAAGGTGGTGGTTGGAAGAATTTAAGTTTGACGGGTTCAGATTTGATGGTGTAACTTCAATGATGTACACTCATCATGGATTGCAGGTAGCATTTACTGGAAACTACAGCGAGTATTTTGGATTAGCAACAGATGTAGAGGCTGTCACTTACCTGATGCTGGTTAATGATTTGATTCATGGACTCTACCCTGAAGCTGTTAGCATTGGTGAAGATGTTAGTGGAATGCCAGCATTTTGTATTCCTGTTGCGGATGGCGGTGTTGGATTCGATTATCGCCTGCATATGGCTGTTGCTGATAAATGGATTGAGCTCCTCCAGAAAATGGATGAAACCTGGCAAATGGGTGATATTGTTCACACACTGACCAACAGAAGATGGGGAGAGAAGTGTGTTGCTTATGCTGAAAGTCATGACCAAGCTCTTGTTGGTGACAAAACAATTGCATTCTGGTTGATGGACAAGGATATGTATGATTTCATGGCTCTGGATAGACCATCAACTCCCACTATAGATCGTGGAATTGCATTACACAAAATGATTAGGCTAATTACTATGGGATTAGGTGGAGAAGGATATCTGAATTTTATGGGGAATGAATTTGGACATCCTGAGTGGATTGATTTTCCAAGAGGGGTTCAACATCTTCCAAATGGAAAAATAGTTCCTGGGAACAATAACAGTTTTGACAAATGCCGGCGTAGATTTGATCTTGCAGATGCTGAATATTTAAGATATCATGGCTTGCAAGAATTTGATCGAGCAATGCATCATCTTGAAGAAACCTATAGTTTCATGACTTCTGAGCACCAATATATATCCCGAAAGGATGAAGGAGATAAGGTTATTGTCTTTGAAAGGGGAAACCTGGTTTTTGTCTTCAATTTTCATTGGAGTAAAAGCTATTCAGAATACCGAGTAGGCTGCTTAAAGCCAGGAAAGTATGAGATTGTCTTGGATTCAGATGAGAAAATATTTGGAGGCTTCGATAGGATTGCTCACACCGCGGAGTACTTCACAGTTGATGGATGGTATGATGAGCGGCCTAATTCCTTCCAAGTATATGCACCTTGTAGAACAGCTGTGGTCTATGCTCTAGTAGAGACAAAGGAAACGATACCCATCAAAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

822

Amino Acids

92.84

Weight (kDa)

5.1

Isoelectric Point (pI)

35.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBM_48 PF02922 179 - 262 9.7e-20 Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
Alpha-amylase PF00128 328 - 586 1.1e-10 Alpha amylase, catalytic domain
Alpha-amylase_C PF02806 717 - 811 1.5e-24 Alpha amylase, C-terminal all-beta domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000044)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07760 AT5G28823
fragaria_vesca FvH4_1g13572 FvH4_2g03281 FvH4_2g04691 FvH4_2g08332 FvH4_2g08333 FvH4_2g15313 FvH4_2g26101 FvH4_2g29541 FvH4_3g06911 FvH4_3g34351 FvH4_3g43733 FvH4_4g02432 FvH4_4g05601 FvH4_4g08213 FvH4_4g09961 FvH4_4g10131 FvH4_4g20001 FvH4_4g20002 FvH4_5g01051 FvH4_5g01401 FvH4_5g27943 FvH4_6g09220 FvH4_6g17383 FvH4_6g35491 FvH4_6g46421 FvH4_7g04151 FvH4_7g13962 FvH4_7g18611 FvH4_7g19491 FvH4_7g19511 FvH4_7g26562
malus_domestica MD06G1221600.v1.1
pyrus_communis pycom10g21150
rosa_chinensis RchiOBHm_Chr1g0337571 RchiOBHm_Chr2g0168771 RchiOBHm_Chr3g0453631 RchiOBHm_Chr6g0278581
rosa_laevigata RLG00000001899 RLG00000001925 RLG00000002026 RLG00000003410 RLG00000003767 RLG00000004304 RLG00000004473 RLG00000004677 RLG00000006856 RLG00000007994 RLG00000009888 RLG00000011627 RLG00000012174 RLG00000012217 RLG00000013118 RLG00000013736 RLG00000014194 RLG00000014251 RLG00000015011 RLG00000015057 RLG00000015235 RLG00000017416 RLG00000018052 RLG00000018537 RLG00000019968 RLG00000020096 RLG00000020263 RLG00000022606 RLG00000023119 RLG00000028111 RLG00000029686 RLG00000030126 RLG00000031124 RLG00000031236 RLG00000032766 RLG00000033171 RLG00000033548 RLG00000033987 RLG00000034062 RLG00000035115 RLG00000035863
rosa_multiflora Rmu_co8036712.1_g000001 Rmu_co8080248.1_g000001 Rmu_co8208334.1_g000001 Rmu_co8253451.1_g000001 Rmu_co8393241.1_g000001 Rmu_co8522225.1_g000005 Rmu_sc0000060.1_g000030 Rmu_sc0000060.1_g000031 Rmu_sc0000060.1_g000032 Rmu_sc0000090.1_g000008 Rmu_sc0000149.1_g000051 Rmu_sc0000149.1_g000058 Rmu_sc0000309.1_g000050 Rmu_sc0000370.1_g000022 Rmu_sc0000370.1_g000023 Rmu_sc0000370.1_g000024 Rmu_sc0000418.1_g000018 Rmu_sc0000427.1_g000014 Rmu_sc0000427.1_g000015 Rmu_sc0000434.1_g000008 Rmu_sc0000487.1_g000038 Rmu_sc0000487.1_g000039 Rmu_sc0000569.1_g000029 Rmu_sc0000580.1_g000097 Rmu_sc0000595.1_g000068 Rmu_sc0000607.1_g000027 Rmu_sc0000738.1_g000004 Rmu_sc0000758.1_g000001 Rmu_sc0000758.1_g000002 Rmu_sc0000870.1_g000019 Rmu_sc0000924.1_g000040 Rmu_sc0000924.1_g000041 Rmu_sc0000999.1_g000037 Rmu_sc0001001.1_g000001 Rmu_sc0001010.1_g000080 Rmu_sc0001075.1_g000041 Rmu_sc0001097.1_g000016 Rmu_sc0001173.1_g000020 Rmu_sc0001258.1_g000010 Rmu_sc0001425.1_g000031 Rmu_sc0001493.1_g000020 Rmu_sc0001493.1_g000021 Rmu_sc0001644.1_g000024 Rmu_sc0001648.1_g000039 Rmu_sc0001662.1_g000002 Rmu_sc0001849.1_g000046 Rmu_sc0001851.1_g000038 Rmu_sc0001861.1_g000006 Rmu_sc0001899.1_g000008 Rmu_sc0002231.1_g000023 Rmu_sc0002393.1_g000012 Rmu_sc0002515.1_g000010 Rmu_sc0002551.1_g000013 Rmu_sc0002680.1_g000029 Rmu_sc0002700.1_g000030 Rmu_sc0002700.1_g000031 Rmu_sc0002709.1_g000035 Rmu_sc0002779.1_g000017 Rmu_sc0003267.1_g000040 Rmu_sc0003306.1_g000009 Rmu_sc0003338.1_g000014 Rmu_sc0003522.1_g000038 Rmu_sc0003522.1_g000039 Rmu_sc0003653.1_g000031 Rmu_sc0003901.1_g000003 Rmu_sc0003920.1_g000009 Rmu_sc0004014.1_g000009 Rmu_sc0004016.1_g000013 Rmu_sc0004031.1_g000002 Rmu_sc0004106.1_g000001 Rmu_sc0004432.1_g000004 Rmu_sc0004481.1_g000020 Rmu_sc0004874.1_g000005 Rmu_sc0004928.1_g000005 Rmu_sc0005065.1_g000053 Rmu_sc0005091.1_g000005 Rmu_sc0005217.1_g000015 Rmu_sc0005242.1_g000002 Rmu_sc0005300.1_g000011 Rmu_sc0005400.1_g000004 Rmu_sc0005486.1_g000007 Rmu_sc0005527.1_g000015 Rmu_sc0006059.1_g000021 Rmu_sc0006087.1_g000004 Rmu_sc0006184.1_g000006 Rmu_sc0006184.1_g000007 Rmu_sc0006578.1_g000006 Rmu_sc0006730.1_g000010 Rmu_sc0006736.1_g000030 Rmu_sc0006736.1_g000033 Rmu_sc0007333.1_g000018 Rmu_sc0007856.1_g000010 Rmu_sc0008231.1_g000003 Rmu_sc0009862.1_g000012 Rmu_sc0010547.1_g000001 Rmu_sc0010547.1_g000003 Rmu_sc0010632.1_g000012 Rmu_sc0010747.1_g000008 Rmu_sc0011075.1_g000009 Rmu_sc0011565.1_g000004 Rmu_sc0011641.1_g000003 Rmu_sc0013102.1_g000013 Rmu_sc0013160.1_g000006 Rmu_sc0014846.1_g000004 Rmu_sc0017037.1_g000003 Rmu_sc0018203.1_g000001 Rmu_sc0018204.1_g000001 Rmu_sc0018348.1_g000001 Rmu_sc0019354.1_g000002 Rmu_sc0021630.1_g000002 Rmu_sc0022987.1_g000002 Rmu_sc0024469.1_g000005 Rmu_sc0033519.1_g000001 Rmu_sc0033519.1_g000002 Rmu_sc0033519.1_g000003 Rmu_sc0042775.1_g000001 Rmu_ssc0000110.1_g000003 Rmu_ssc0000110.1_g000004 Rmu_ssc0000126.1_g000068 Rmu_ssc0000200.1_g000007 Rmu_ssc0000295.1_g000003 Rmu_ssc0000295.1_g000004 Rmu_ssc0000299.1_g000010 Rmu_ssc0000308.1_g000024 Rmu_ssc0000339.1_g000006 Rmu_ssc0000385.1_g000012 Rmu_ssc0000409.1_g000004 Rmu_ssc0000421.1_g000004
rosa_roxburghii Rroxscaffold_156G00440360 Rroxscaffold_166G00440800 Rroxscaffold_1G00039040 Rroxscaffold_1G00039050 Rroxscaffold_1G00073950 Rroxscaffold_2G00091710 Rroxscaffold_2G00120050 Rroxscaffold_2G00122590 Rroxscaffold_3G00219700 Rroxscaffold_3G00264140 Rroxscaffold_4G00290600 Rroxscaffold_4G00323610 Rroxscaffold_4G00328460 Rroxscaffold_5G00343440 Rroxscaffold_5G00343570 Rroxscaffold_5G00378540 Rroxscaffold_5G00385090 Rroxscaffold_7G00169130 Rroxscaffold_7G00216420
rosa_rugosa Rorug01G0065800 Rorug01G0073500 Rorug01G0091700 Rorug01G0096500 Rorug01G0204700.1 Rorug01G0249100 Rorug01G0333800 Rorug01G0333900 Rorug01G0339500 Rorug01G0431300 Rorug02G0085400 Rorug02G0117500 Rorug02G0130900 Rorug02G0178800 Rorug02G0226700 Rorug02G0336300 Rorug02G0338700 Rorug02G0351400 Rorug02G0459900 Rorug03G0187000 Rorug03G0223700 Rorug03G0291300 Rorug03G0291300 Rorug03G0311100 Rorug03G0316900 Rorug03G0346000 Rorug04G0014500 Rorug04G0014600 Rorug04G0124100 Rorug04G0136500 Rorug04G0302000 Rorug04G0338100 Rorug04G0338200 Rorug04G0413100 Rorug05G0182200 Rorug05G0226500 Rorug05G0273300 Rorug05G0292200 Rorug05G0292200 Rorug05G0392500 Rorug05G0394500 Rorug05G0394600 Rorug05G0505600.1 Rorug06G0351400 Rorug06G0393400 Rorug06G0393600 Rorug06G0470000 Rorug07G0063100 Rorug07G0086800 Rorug07G0109200 Rorug07G0236100
rosa_samantha Rh1AG010800 Rh1AG011100 Rh1AG064900 Rh1AG088000 Rh1AG207100 Rh1AG262000 Rh1AG300800 Rh1BG043000 Rh1BG144600 Rh1BG180700 Rh1BG180800 Rh1BG328800 Rh1BG399400 Rh1CG041400 Rh1CG047300 Rh1CG379700 Rh1DG036500 Rh1DG083000 Rh1DG210700 Rh1DG210800 Rh1DG231100 Rh2AG007900 Rh2AG055500 Rh2AG339100 Rh2AG368100 Rh2BG243300 Rh2BG258900 Rh2BG292000 Rh2BG333500 Rh2BG387300 Rh2BG612800 Rh2BG619100 Rh2CG026500 Rh2CG163600 Rh2CG535700 Rh2DG186400 Rh2DG235000 Rh2DG314500 Rh2DG388500 Rh2DG391400 Rh2DG496900 Rh2DG526700 Rh2DG570700 Rh3AG330700 Rh3BG266900 Rh3CG236000 Rh3CG340400 Rh3DG090000 Rh3DG278400 Rh3DG297600 Rh3DG362600 Rh4AG001300 Rh4AG023300 Rh4AG097100 Rh4AG427000 Rh4BG029400 Rh4BG032400 Rh4BG086000 Rh4BG249200 Rh4CG001900 Rh4CG040600 Rh4CG093000 Rh4CG106300 Rh4CG113200 Rh4CG113900 Rh4DG002300 Rh4DG144400 Rh4DG234200 Rh5AG043700 Rh5AG084900 Rh5AG161500 Rh5AG409000 Rh5AG457200 Rh5AG457900 Rh5AG473700 Rh5AG520600 Rh5BG042100 Rh5BG124100 Rh5BG323500 Rh5BG417200 Rh5BG443700 Rh5BG451500 Rh5BG464900 Rh5BG470400 Rh5BG522500 Rh5CG068800 Rh5CG178300 Rh5CG231000 Rh5CG258600 Rh5CG394500 Rh5CG473700 Rh5DG164700 Rh5DG235400 Rh5DG261300 Rh5DG304900 Rh5DG334500 Rh5DG424300 Rh5DG458400 Rh5DG478600 Rh5DG552300 Rh5DG552700 Rh6AG037000 Rh6AG042100 Rh6AG255500 Rh6AG283400 Rh6AG291800 Rh6BG049600 Rh6BG080700 Rh6BG114600 Rh6BG128900 Rh6BG352500 Rh6CG052400 Rh6CG112900 Rh6CG113000 Rh6CG131300 Rh6CG157700 Rh6CG243200 Rh6CG254100 Rh6CG275700 Rh6CG299700 Rh6CG309100 Rh6CG317600 Rh6CG342600 Rh6CG471900 Rh6DG038200 Rh6DG102300 Rh6DG114400 Rh6DG225900 Rh6DG292900 Rh6DG320700 Rh6DG512800 Rh7AG217700 Rh7AG313900 Rh7AG446000 Rh7AG472600 Rh7BG223100 Rh7BG349900 Rh7BG352000 Rh7CG160200 Rh7CG233900 Rh7CG242700 Rh7CG273900 Rh7CG306400 Rh7CG322200 Rh7DG053800 Rh7DG077800 Rh7DG227700 Rh7DG404800
rosa_wichuraiana Rw0G003990 Rw2G022110 Rw2G024890 Rw6G005700 Rw7G008770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1411
Acc65I GGTACC 1 cut(s) 1062
AccB1I GGYRCC 2 cut(s) 583, 1062
AccB7I CCANNNNNTGG 4 cut(s) 158, 386, 827, 1660
AccBSI CCGCTC 1 cut(s) 2377
AccI GTMKAC 1 cut(s) 234
AccII CGCG 1 cut(s) 2342
AclWI GGATC 6 cut(s) 206, 219, 410, 733, 794, 836
AcsI RAATTY 6 cut(s) 662, 965, 1355, 1918, 1934, 2087
AcuI CTGAAG 2 cut(s) 741, 1548
AdeI CACNNNGTG 1 cut(s) 554
AfaI GTAC 6 cut(s) 361, 801, 1064, 1161, 1403, 2348
AfiI CCNNNNNNNGG 9 cut(s) 158, 386, 392, 827, 1059, 1495, 1621, 1660, 2462
AflIII ACRYGT 2 cut(s) 919, 1215
AjiI CACGTC 1 cut(s) 292
AjnI CCWGG 7 cut(s) 142, 385, 586, 1670, 2002, 2202, 2269
AloI GAACNNNNNNTCC 2 cut(s) 1983, 2015
Alw21I GWGCWC 3 cut(s) 1141, 1650, 2145
Alw26I GTCTC 2 cut(s) 883, 2432
AlwI GGATC 6 cut(s) 206, 219, 410, 733, 794, 836
AlwNI CAGNNNCTG 1 cut(s) 2057
Ama87I CYCGRG 2 cut(s) 729, 1257
AoxI GGCC 1 cut(s) 2378
ApeKI GCWGC 3 cut(s) 119, 1092, 2259
ApoI RAATTY 6 cut(s) 662, 965, 1355, 1918, 1934, 2087
AseI ATTAAT 1 cut(s) 608
Asp700I GAANNNNTTC 2 cut(s) 79, 431
Asp718I GGTACC 1 cut(s) 1062
AspS9I GGNCC 3 cut(s) 17, 149, 1254
AsuHPI GGTGA 5 cut(s) 699, 1063, 1556, 1694, 1778
AvaI CYCGRG 2 cut(s) 729, 1257
AvaII GGWCC 3 cut(s) 17, 149, 1254
AxyI CCTNAGG 1 cut(s) 216
BaeGI GKGCMC 1 cut(s) 586
BamHI GGATCC 1 cut(s) 211
BanI GGYRCC 2 cut(s) 583, 1062
BanII GRGCYC 2 cut(s) 1141, 1650
BauI CACGAG 1 cut(s) 522
BbsI GAAGAC 2 cut(s) 72, 2206
Bbv12I GWGCWC 3 cut(s) 1141, 1650, 2145
BbvCI CCTCAGC 1 cut(s) 879
BbvI GCAGC 3 cut(s) 106, 1104, 2246
BcgI CGANNNNNNTGC 8 cut(s) 264, 298, 710, 744, 2241, 2275, 2312, 2346
BciT130I CCWGG 7 cut(s) 144, 387, 588, 1672, 2004, 2204, 2271
BciVI GTATCC 1 cut(s) 742
BclI TGATCA 1 cut(s) 439
BcoDI GTCTC 2 cut(s) 883, 2432
BfaI CTAG 3 cut(s) 336, 1089, 2432
BfmI CTRYAG 3 cut(s) 1441, 1845, 2122
BfuAI ACCTGC 1 cut(s) 1411
BfuI GTATCC 1 cut(s) 742
BglII AGATCT 1 cut(s) 678
BisI GCNGC 5 cut(s) 6, 120, 1093, 2260, 2378
BlsI GCNGC 5 cut(s) 7, 121, 1094, 2261, 2379
BmcAI AGTACT 2 cut(s) 361, 2348
Bme1390I CCNGG 7 cut(s) 144, 387, 588, 1672, 2004, 2204, 2271
Bme18I GGWCC 3 cut(s) 17, 149, 1254
BmeT110I CYCGRG 2 cut(s) 729, 1257
BmgBI CACGTC 1 cut(s) 292
BmgT120I GGNCC 3 cut(s) 17, 149, 1254
BmiI GGNNCC 7 cut(s) 213, 585, 807, 1064, 1228, 1255, 1256
BmrFI CCNGG 7 cut(s) 144, 387, 588, 1672, 2004, 2204, 2271
BmrI ACTGGG 1 cut(s) 402
BmsI GCATC 4 cut(s) 611, 1482, 2044, 2113
BmuI ACTGGG 1 cut(s) 402
BpiI GAAGAC 2 cut(s) 72, 2206
BpmI CTGGAG 4 cut(s) 165, 609, 831, 1637
Bpu10I CCTNAGC 1 cut(s) 879
BpuEI CTTGAG 1 cut(s) 245
BsaBI GATNNNNATC 1 cut(s) 2456
BsaI GGTCTC 1 cut(s) 883
BsaJI CCNNGG 4 cut(s) 318, 1258, 2003, 2340
BsaXI ACNNNNNCTCC 6 cut(s) 34, 37, 64, 67, 2163, 2193
Bsc4I CCNNNNNNNGG 9 cut(s) 158, 386, 392, 827, 1059, 1495, 1621, 1660, 2462
Bse118I RCCGGY 1 cut(s) 2031
Bse1I ACTGG 2 cut(s) 397, 1438
Bse21I CCTNAGG 1 cut(s) 216
Bse3DI GCAATG 1 cut(s) 2106
Bse8I GATNNNNATC 1 cut(s) 2456
BseBI CCWGG 7 cut(s) 144, 387, 588, 1672, 2004, 2204, 2271
BseDI CCNNGG 4 cut(s) 318, 1258, 2003, 2340
BseJI GATNNNNATC 1 cut(s) 2456
BseLI CCNNNNNNNGG 9 cut(s) 158, 386, 392, 827, 1059, 1495, 1621, 1660, 2462
BseMI GCAATG 1 cut(s) 2106
BseMII CTCAG 4 cut(s) 230, 893, 1938, 2130
BseNI ACTGG 2 cut(s) 397, 1438
BseRI GAGGAG 3 cut(s) 42, 869, 1640
BseSI GKGCMC 1 cut(s) 586
BseXI GCAGC 3 cut(s) 106, 1104, 2246
BseYI CCCAGC 1 cut(s) 194
Bsh1236I CGCG 1 cut(s) 2342
Bsh1285I CGRYCG 1 cut(s) 12
BshFI GGCC 1 cut(s) 2380
BshNI GGYRCC 2 cut(s) 583, 1062
BsiEI CGRYCG 1 cut(s) 12
BsiHKAI GWGCWC 3 cut(s) 1141, 1650, 2145
BsiHKCI CYCGRG 2 cut(s) 729, 1257
BsiSI CCGG 2 cut(s) 72, 2032
BslFI GGGAC 2 cut(s) 364, 1240
BslI CCNNNNNNNGG 9 cut(s) 158, 386, 392, 827, 1059, 1495, 1621, 1660, 2462
BsmAI GTCTC 2 cut(s) 883, 2432
BsmFI GGGAC 2 cut(s) 364, 1240
BsmI GAATGC 4 cut(s) 643, 1039, 1566, 1781
BsnI GGCC 1 cut(s) 2380
Bso31I GGTCTC 1 cut(s) 883
BsoBI CYCGRG 2 cut(s) 729, 1257
Bsp1286I GDGCHC 4 cut(s) 586, 1141, 1650, 2145
Bsp1407I TGTACA 1 cut(s) 1401
BspANI GGCC 1 cut(s) 2380
BspCNI CTCAG 4 cut(s) 229, 892, 1939, 2131
BspFNI CGCG 1 cut(s) 2342
BspHI TCATGA 3 cut(s) 1141, 1747, 2130
BspLI GGNNCC 7 cut(s) 213, 585, 807, 1064, 1228, 1255, 1256
BspMI ACCTGC 1 cut(s) 1411
BspPI GGATC 6 cut(s) 206, 219, 410, 733, 794, 836
BspT107I GGYRCC 2 cut(s) 583, 1062
BspTNI GGTCTC 1 cut(s) 883
BsrBI CCGCTC 1 cut(s) 2377
BsrDI GCAATG 1 cut(s) 2106
BsrFI RCCGGY 1 cut(s) 2031
BsrGI TGTACA 1 cut(s) 1401
BsrI ACTGG 2 cut(s) 397, 1438
BssAI RCCGGY 1 cut(s) 2031
BssECI CCNNGG 4 cut(s) 318, 1258, 2003, 2340
BssSI CACGAG 1 cut(s) 522
BssT1I CCWWGG 1 cut(s) 318
Bst2BI CACGAG 1 cut(s) 522
Bst2UI CCWGG 7 cut(s) 144, 387, 588, 1672, 2004, 2204, 2271
Bst4CI ACNGT 4 cut(s) 115, 239, 2018, 2356
Bst6I CTCTTC 1 cut(s) 846
BstAPI GCANNNNNTGC 1 cut(s) 362
BstAUI TGTACA 1 cut(s) 1401
BstC8I GCNNGC 6 cut(s) 480, 1054, 1566, 1616, 2033, 2081
BstDEI CTNAG 5 cut(s) 216, 594, 879, 1947, 2139
BstDSI CCRYGG 1 cut(s) 2340
BstFNI CGCG 1 cut(s) 2342
BstMAI GTCTC 2 cut(s) 883, 2432
BstMCI CGRYCG 1 cut(s) 12
BstMWI GCNNNNNNNGC 4 cut(s) 362, 590, 599, 2339
BstNI CCWGG 7 cut(s) 144, 387, 588, 1672, 2004, 2204, 2271
BstNSI RCATGY 2 cut(s) 923, 1219
BstSCI CCNGG 7 cut(s) 142, 385, 586, 1670, 2002, 2202, 2269
BstSFI CTRYAG 3 cut(s) 1441, 1845, 2122
BstSLI GKGCMC 1 cut(s) 586
BstUI CGCG 1 cut(s) 2342
BstV1I GCAGC 3 cut(s) 106, 1104, 2246
BstV2I GAAGAC 2 cut(s) 72, 2206
BstX2I RGATCY 4 cut(s) 211, 415, 678, 738
BstYI RGATCY 4 cut(s) 211, 415, 678, 738
Bsu36I CCTNAGG 1 cut(s) 216
BsuI GTATCC 1 cut(s) 742
BsuRI GGCC 1 cut(s) 2380
BtgI CCRYGG 1 cut(s) 2340
BtrI CACGTC 1 cut(s) 292
BtsI GCAGTG 2 cut(s) 304, 559
BtsIMutI CAGTG 5 cut(s) 244, 304, 390, 559, 1697
BveI ACCTGC 1 cut(s) 1411
Cac8I GCNNGC 6 cut(s) 480, 1054, 1566, 1616, 2033, 2081
CaiI CAGNNNCTG 1 cut(s) 2057
CciI TCATGA 3 cut(s) 1141, 1747, 2130
Cfr10I RCCGGY 1 cut(s) 2031
Cfr13I GGNCC 3 cut(s) 17, 149, 1254
Cfr42I CCGCGG 1 cut(s) 2343
CsiI ACCWGGT 1 cut(s) 2202
Csp6I GTAC 6 cut(s) 360, 800, 1063, 1160, 1402, 2347
CviQI GTAC 6 cut(s) 360, 800, 1063, 1160, 1402, 2347
DdeI CTNAG 5 cut(s) 216, 594, 879, 1947, 2139
DraI TTTAAA 1 cut(s) 345
DraIII CACNNNGTG 1 cut(s) 554
Eam1104I CTCTTC 1 cut(s) 846
EarI CTCTTC 1 cut(s) 846
Ecl136II GAGCTC 2 cut(s) 1139, 1648
Eco130I CCWWGG 1 cut(s) 318
Eco24I GRGCYC 2 cut(s) 1141, 1650
Eco31I GGTCTC 1 cut(s) 883
Eco32I GATATC 3 cut(s) 1265, 1913, 2072
Eco47I GGWCC 3 cut(s) 17, 149, 1254
Eco53kI GAGCTC 2 cut(s) 1139, 1648
Eco57I CTGAAG 2 cut(s) 741, 1548
Eco81I CCTNAGG 1 cut(s) 216
Eco88I CYCGRG 2 cut(s) 729, 1257
EcoICRI GAGCTC 2 cut(s) 1139, 1648
EcoO109I RGGNCCY 1 cut(s) 1254
EcoRI GAATTC 1 cut(s) 965
EcoRII CCWGG 7 cut(s) 142, 385, 586, 1670, 2002, 2202, 2269
EcoRV GATATC 3 cut(s) 1265, 1913, 2072
EcoT14I CCWWGG 1 cut(s) 318
EcoT22I ATGCAT 1 cut(s) 2106
EcoT38I GRGCYC 2 cut(s) 1141, 1650
ErhI CCWWGG 1 cut(s) 318
FaqI GGGAC 2 cut(s) 364, 1240
FauI CCCGC 1 cut(s) 718
FauNDI CATATG 2 cut(s) 958, 1620
FbaI TGATCA 1 cut(s) 439
FblI GTMKAC 1 cut(s) 234
Fnu4HI GCNGC 5 cut(s) 6, 120, 1093, 2260, 2378
FriOI GRGCYC 2 cut(s) 1141, 1650
Fsp4HI GCNGC 5 cut(s) 6, 120, 1093, 2260, 2378
FspBI CTAG 3 cut(s) 336, 1089, 2432
GluI GCNGC 5 cut(s) 6, 120, 1093, 2260, 2378
GsaI CCCAGC 1 cut(s) 198
GsuI CTGGAG 4 cut(s) 165, 609, 831, 1637
HaeIII GGCC 1 cut(s) 2380
HapII CCGG 2 cut(s) 72, 2032
HindIII AAGCTT 1 cut(s) 998
HpaII CCGG 2 cut(s) 72, 2032
HphI GGTGA 5 cut(s) 699, 1063, 1556, 1694, 1778
Hpy166II GTNNAC 7 cut(s) 20, 235, 546, 707, 1177, 1404, 1693
Hpy8I GTNNAC 7 cut(s) 20, 235, 546, 707, 1177, 1404, 1693
HpyAV CCTTC 8 cut(s) 66, 111, 421, 494, 765, 1901, 2162, 2398
HpyCH4III ACNGT 4 cut(s) 115, 239, 2018, 2356
HpyCH4IV ACGT 2 cut(s) 291, 1199
HpyF10VI GCNNNNNNNGC 4 cut(s) 362, 590, 599, 2339
HpyF3I CTNAG 5 cut(s) 216, 594, 879, 1947, 2139
HpySE526I ACGT 2 cut(s) 291, 1199
KflI GGGWCCC 1 cut(s) 1254
KpnI GGTACC 1 cut(s) 1066
KroI GCCGGC 1 cut(s) 2031
KroNI GCCGGC 1 cut(s) 2033
Ksp22I TGATCA 1 cut(s) 439
KspI CCGCGG 1 cut(s) 2343
LmnI GCTCC 7 cut(s) 196, 370, 590, 811, 906, 1036, 1653
Lsp1109I GCAGC 3 cut(s) 106, 1104, 2246
LweI GCATC 4 cut(s) 611, 1482, 2044, 2113
MabI ACCWGGT 1 cut(s) 2202
MaeI CTAG 3 cut(s) 336, 1089, 2432
MaeII ACGT 2 cut(s) 291, 1199
MaeIII GTNAC 7 cut(s) 241, 1004, 1069, 1235, 1387, 1480, 1766
MbiI CCGCTC 1 cut(s) 2377
MfeI CAATTG 3 cut(s) 182, 625, 1776
MflI RGATCY 4 cut(s) 211, 415, 678, 738
MhlI GDGCHC 4 cut(s) 586, 1141, 1650, 2145
MlyI GAGTC 3 cut(s) 646, 764, 1512
MmeI TCCRAC 5 cut(s) 176, 904, 1182, 1329, 1579
Mph1103I ATGCAT 1 cut(s) 2106
MroNI GCCGGC 1 cut(s) 2031
MroXI GAANNNNTTC 2 cut(s) 79, 431
MseI TTAA 9 cut(s) 110, 344, 608, 951, 993, 1359, 1500, 2066, 2264
MslI CAYNNNNRTG 1 cut(s) 1182
MspA1I CMGCKG 2 cut(s) 2342, 2417
MspI CCGG 2 cut(s) 72, 2032
MspR9I CCNGG 7 cut(s) 144, 387, 588, 1672, 2004, 2204, 2271
MunI CAATTG 3 cut(s) 182, 625, 1776
Mva1269I GAATGC 4 cut(s) 643, 1039, 1566, 1781
MvaI CCWGG 7 cut(s) 144, 387, 588, 1672, 2004, 2204, 2271
MvnI CGCG 1 cut(s) 2342
MwoI GCNNNNNNNGC 4 cut(s) 362, 590, 599, 2339
NaeI GCCGGC 1 cut(s) 2033
NdeI CATATG 2 cut(s) 958, 1620
NgoMIV GCCGGC 1 cut(s) 2031
NlaIV GGNNCC 7 cut(s) 213, 585, 807, 1064, 1228, 1255, 1256
NmuCI GTSAC 4 cut(s) 1069, 1235, 1480, 1766
NsiI ATGCAT 1 cut(s) 2106
NspI RCATGY 2 cut(s) 923, 1219
PaeR7I CTCGAG 1 cut(s) 729
PagI TCATGA 3 cut(s) 1141, 1747, 2130
PciI ACATGT 2 cut(s) 919, 1215
PctI GAATGC 4 cut(s) 643, 1039, 1566, 1781
PdiI GCCGGC 1 cut(s) 2033
PdmI GAANNNNTTC 2 cut(s) 79, 431
PfeI GAWTC 7 cut(s) 89, 95, 203, 1280, 1510, 1602, 2294
PflMI CCANNNNNTGG 4 cut(s) 158, 386, 827, 1660
PfoI TCCNGGA 1 cut(s) 142
PkrI GCNGC 5 cut(s) 7, 121, 1094, 2261, 2379
Ple19I CGATCG 1 cut(s) 12
PleI GAGTC 3 cut(s) 646, 764, 1512
PpsI GAGTC 3 cut(s) 646, 764, 1512
PpuMI RGGWCCY 1 cut(s) 1254
PscI ACATGT 2 cut(s) 919, 1215
PshBI ATTAAT 1 cut(s) 608
Psp124BI GAGCTC 2 cut(s) 1141, 1650
Psp5II RGGWCCY 1 cut(s) 1254
Psp6I CCWGG 7 cut(s) 142, 385, 586, 1670, 2002, 2202, 2269
PspFI CCCAGC 1 cut(s) 194
PspGI CCWGG 7 cut(s) 142, 385, 586, 1670, 2002, 2202, 2269
PspN4I GGNNCC 7 cut(s) 213, 585, 807, 1064, 1228, 1255, 1256
PspPI GGNCC 3 cut(s) 17, 149, 1254
PspPPI RGGWCCY 1 cut(s) 1254
PstNI CAGNNNCTG 1 cut(s) 2057
PsuI RGATCY 4 cut(s) 211, 415, 678, 738
PvuI CGATCG 1 cut(s) 12
PvuII CAGCTG 1 cut(s) 2417
RsaI GTAC 6 cut(s) 361, 801, 1064, 1161, 1403, 2348
RsaNI GTAC 6 cut(s) 360, 800, 1063, 1160, 1402, 2347
RseI CAYNNNNRTG 1 cut(s) 1182
SacI GAGCTC 2 cut(s) 1141, 1650
SacII CCGCGG 1 cut(s) 2343
SaqAI TTAA 9 cut(s) 110, 344, 608, 951, 993, 1359, 1500, 2066, 2264
SatI GCNGC 5 cut(s) 6, 120, 1093, 2260, 2378
Sau96I GGNCC 3 cut(s) 17, 149, 1254
ScaI AGTACT 2 cut(s) 361, 2348
SchI GAGTC 3 cut(s) 646, 764, 1512
ScrFI CCNGG 7 cut(s) 144, 387, 588, 1672, 2004, 2204, 2271
SduI GDGCHC 4 cut(s) 586, 1141, 1650, 2145
SexAI ACCWGGT 1 cut(s) 2202
SfaNI GCATC 4 cut(s) 611, 1482, 2044, 2113
SfcI CTRYAG 3 cut(s) 1441, 1845, 2122
Sfr274I CTCGAG 1 cut(s) 729
Sfr303I CCGCGG 1 cut(s) 2343
SgrBI CCGCGG 1 cut(s) 2343
SinI GGWCC 3 cut(s) 17, 149, 1254
SlaI CTCGAG 1 cut(s) 729
SmiMI CAYNNNNRTG 1 cut(s) 1182
SmlI CTYRAG 2 cut(s) 224, 729
SmoI CTYRAG 2 cut(s) 224, 729
SspI AATATT 2 cut(s) 2063, 2310
SspMI CTAG 3 cut(s) 336, 1089, 2432
SstI GAGCTC 2 cut(s) 1141, 1650
StyD4I CCNGG 7 cut(s) 142, 385, 586, 1670, 2002, 2202, 2269
StyI CCWWGG 1 cut(s) 318
TaaI ACNGT 4 cut(s) 115, 239, 2018, 2356
TaiI ACGT 2 cut(s) 294, 1202
TaqI TCGA 5 cut(s) 41, 730, 1605, 2095, 2322
TatI WGTACW 4 cut(s) 359, 1159, 1401, 2346
TauI GCSGC 2 cut(s) 8, 2380
TfiI GAWTC 7 cut(s) 89, 95, 203, 1280, 1510, 1602, 2294
Tru1I TTAA 9 cut(s) 110, 344, 608, 951, 993, 1359, 1500, 2066, 2264
Tru9I TTAA 9 cut(s) 110, 344, 608, 951, 993, 1359, 1500, 2066, 2264
TscAI CASTG 5 cut(s) 244, 304, 397, 559, 1704
TseFI GTSAC 4 cut(s) 1069, 1235, 1480, 1766
TseI GCWGC 3 cut(s) 119, 1092, 2259
Tsp45I GTSAC 4 cut(s) 1069, 1235, 1480, 1766
TspGWI ACGGA 2 cut(s) 425, 731
TspRI CASTG 5 cut(s) 244, 304, 397, 559, 1704
Van91I CCANNNNNTGG 4 cut(s) 158, 386, 827, 1660
VpaK11BI GGWCC 3 cut(s) 17, 149, 1254
VspI ATTAAT 1 cut(s) 608
XapI RAATTY 6 cut(s) 662, 965, 1355, 1918, 1934, 2087
XceI RCATGY 2 cut(s) 923, 1219
XcmI CCANNNNNNNNNTGG 1 cut(s) 1760
XhoI CTCGAG 1 cut(s) 729
XmiI GTMKAC 1 cut(s) 234
XmnI GAANNNNTTC 2 cut(s) 79, 431
XspI CTAG 3 cut(s) 336, 1089, 2432
ZrmI AGTACT 2 cut(s) 361, 2348
Zsp2I ATGCAT 1 cut(s) 2106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.