Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-CCHC_4 | PF14392 | 2 - 37 | 1.9e-07 | Zinc knuckle |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 806 |
| AcsI | RAATTY | 1 cut(s) | 570 |
| AfaI | GTAC | 1 cut(s) | 593 |
| AflIII | ACRYGT | 1 cut(s) | 313 |
| AgsI | TTSAA | 7 cut(s) | 8, 215, 509, 527, 575, 620, 776 |
| AjnI | CCWGG | 1 cut(s) | 370 |
| Alw21I | GWGCWC | 1 cut(s) | 477 |
| Alw26I | GTCTC | 1 cut(s) | 761 |
| AlwI | GGATC | 1 cut(s) | 806 |
| Ama87I | CYCGRG | 1 cut(s) | 271 |
| ApeKI | GCWGC | 2 cut(s) | 116, 794 |
| ApoI | RAATTY | 1 cut(s) | 570 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 54 |
| AspLEI | GCGC | 1 cut(s) | 183 |
| AsuHPI | GGTGA | 2 cut(s) | 254, 308 |
| AvaI | CYCGRG | 1 cut(s) | 271 |
| BauI | CACGAG | 1 cut(s) | 780 |
| Bbv12I | GWGCWC | 1 cut(s) | 477 |
| BbvI | GCAGC | 2 cut(s) | 103, 781 |
| BccI | CCATC | 3 cut(s) | 287, 317, 650 |
| BciT130I | CCWGG | 1 cut(s) | 372 |
| BclI | TGATCA | 1 cut(s) | 382 |
| BcoDI | GTCTC | 1 cut(s) | 761 |
| BfaI | CTAG | 4 cut(s) | 438, 534, 633, 786 |
| BisI | GCNGC | 2 cut(s) | 117, 795 |
| BlsI | GCNGC | 2 cut(s) | 118, 796 |
| Bme1390I | CCNGG | 1 cut(s) | 372 |
| BmeT110I | CYCGRG | 1 cut(s) | 271 |
| BmiI | GGNNCC | 1 cut(s) | 804 |
| BmrFI | CCNGG | 1 cut(s) | 372 |
| BmsI | GCATC | 2 cut(s) | 100, 601 |
| BpmI | CTGGAG | 1 cut(s) | 354 |
| Bpu10I | CCTNAGC | 1 cut(s) | 405 |
| BpuEI | CTTGAG | 2 cut(s) | 504, 540 |
| BsaWI | WCCGGW | 1 cut(s) | 235 |
| Bse3DI | GCAATG | 1 cut(s) | 190 |
| BseBI | CCWGG | 1 cut(s) | 372 |
| BseGI | GGATG | 2 cut(s) | 295, 685 |
| BseMI | GCAATG | 1 cut(s) | 190 |
| BseMII | CTCAG | 3 cut(s) | 471, 666, 722 |
| BseRI | GAGGAG | 1 cut(s) | 543 |
| BseXI | GCAGC | 2 cut(s) | 103, 781 |
| BsiHKAI | GWGCWC | 1 cut(s) | 477 |
| BsiHKCI | CYCGRG | 1 cut(s) | 271 |
| BsiSI | CCGG | 1 cut(s) | 236 |
| BslFI | GGGAC | 1 cut(s) | 355 |
| BsmAI | GTCTC | 1 cut(s) | 761 |
| BsmFI | GGGAC | 1 cut(s) | 355 |
| BsoBI | CYCGRG | 1 cut(s) | 271 |
| Bsp1286I | GDGCHC | 1 cut(s) | 477 |
| Bsp143I | GATC | 3 cut(s) | 164, 382, 811 |
| BspCNI | CTCAG | 3 cut(s) | 472, 667, 721 |
| BspHI | TCATGA | 1 cut(s) | 379 |
| BspLI | GGNNCC | 1 cut(s) | 804 |
| BspPI | GGATC | 1 cut(s) | 806 |
| BspQI | GCTCTTC | 1 cut(s) | 621 |
| BsrDI | GCAATG | 1 cut(s) | 190 |
| BssMI | GATC | 3 cut(s) | 164, 382, 811 |
| BssSI | CACGAG | 1 cut(s) | 780 |
| Bst2BI | CACGAG | 1 cut(s) | 780 |
| Bst2UI | CCWGG | 1 cut(s) | 372 |
| Bst6I | CTCTTC | 3 cut(s) | 469, 621, 707 |
| BstC8I | GCNNGC | 1 cut(s) | 99 |
| BstDEI | CTNAG | 4 cut(s) | 405, 480, 675, 708 |
| BstF5I | GGATG | 2 cut(s) | 295, 685 |
| BstHHI | GCGC | 1 cut(s) | 183 |
| BstKTI | GATC | 3 cut(s) | 167, 385, 814 |
| BstMAI | GTCTC | 1 cut(s) | 761 |
| BstMBI | GATC | 3 cut(s) | 164, 382, 811 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 791, 800 |
| BstNI | CCWGG | 1 cut(s) | 372 |
| BstNSI | RCATGY | 2 cut(s) | 143, 317 |
| BstSCI | CCNGG | 1 cut(s) | 370 |
| BstV1I | GCAGC | 2 cut(s) | 103, 781 |
| BtsCI | GGATG | 2 cut(s) | 295, 685 |
| Cac8I | GCNNGC | 1 cut(s) | 99 |
| CciI | TCATGA | 1 cut(s) | 379 |
| CfoI | GCGC | 1 cut(s) | 183 |
| Csp6I | GTAC | 1 cut(s) | 592 |
| CviAII | CATG | 6 cut(s) | 134, 140, 314, 380, 685, 816 |
| CviJI | RGCY | 4 cut(s) | 404, 410, 533, 803 |
| CviKI_1 | RGCY | 4 cut(s) | 404, 410, 533, 803 |
| CviQI | GTAC | 1 cut(s) | 592 |
| DdeI | CTNAG | 4 cut(s) | 405, 480, 675, 708 |
| DpnI | GATC | 3 cut(s) | 166, 384, 813 |
| DpnII | GATC | 3 cut(s) | 164, 382, 811 |
| Eam1104I | CTCTTC | 3 cut(s) | 469, 621, 707 |
| EarI | CTCTTC | 3 cut(s) | 469, 621, 707 |
| Eco88I | CYCGRG | 1 cut(s) | 271 |
| EcoRII | CCWGG | 1 cut(s) | 370 |
| FaeI | CATG | 6 cut(s) | 137, 143, 317, 383, 688, 819 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 600, 632 |
| FaqI | GGGAC | 1 cut(s) | 355 |
| FatI | CATG | 6 cut(s) | 133, 139, 313, 379, 684, 815 |
| FauNDI | CATATG | 1 cut(s) | 387 |
| FbaI | TGATCA | 1 cut(s) | 382 |
| Fnu4HI | GCNGC | 2 cut(s) | 117, 795 |
| FokI | GGATG | 2 cut(s) | 302, 692 |
| Fsp4HI | GCNGC | 2 cut(s) | 117, 795 |
| FspBI | CTAG | 4 cut(s) | 438, 534, 633, 786 |
| GlaI | GCGC | 1 cut(s) | 182 |
| GluI | GCNGC | 2 cut(s) | 117, 795 |
| GsuI | CTGGAG | 1 cut(s) | 354 |
| HapII | CCGG | 1 cut(s) | 236 |
| HhaI | GCGC | 1 cut(s) | 183 |
| Hin1II | CATG | 6 cut(s) | 137, 143, 317, 383, 688, 819 |
| Hin6I | GCGC | 1 cut(s) | 181 |
| HinP1I | GCGC | 1 cut(s) | 181 |
| HinfI | GANTC | 2 cut(s) | 500, 740 |
| HpaII | CCGG | 1 cut(s) | 236 |
| HphI | GGTGA | 2 cut(s) | 254, 308 |
| Hpy188I | TCNGA | 5 cut(s) | 364, 481, 568, 676, 711 |
| Hpy188III | TCNNGA | 4 cut(s) | 168, 197, 380, 527 |
| HpyAV | CCTTC | 4 cut(s) | 145, 149, 233, 552 |
| HpyCH4IV | ACGT | 2 cut(s) | 10, 357 |
| HpyCH4V | TGCA | 4 cut(s) | 119, 161, 353, 662 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 791, 800 |
| HpyF3I | CTNAG | 4 cut(s) | 405, 480, 675, 708 |
| HpySE526I | ACGT | 2 cut(s) | 10, 357 |
| Hsp92II | CATG | 6 cut(s) | 137, 143, 317, 383, 688, 819 |
| HspAI | GCGC | 1 cut(s) | 181 |
| Ksp22I | TGATCA | 1 cut(s) | 382 |
| Kzo9I | GATC | 3 cut(s) | 164, 382, 811 |
| LguI | GCTCTTC | 1 cut(s) | 621 |
| LmnI | GCTCC | 1 cut(s) | 808 |
| LpnPI | CCDG | 8 cut(s) | 72, 111, 182, 249, 357, 384, 396, 729 |
| Lsp1109I | GCAGC | 2 cut(s) | 103, 781 |
| LweI | GCATC | 2 cut(s) | 100, 601 |
| MaeI | CTAG | 4 cut(s) | 438, 534, 633, 786 |
| MaeII | ACGT | 2 cut(s) | 10, 357 |
| MalI | GATC | 3 cut(s) | 166, 384, 813 |
| MboI | GATC | 3 cut(s) | 164, 382, 811 |
| MboII | GAAGA | 5 cut(s) | 456, 608, 620, 724, 729 |
| MfeI | CAATTG | 1 cut(s) | 398 |
| MhlI | GDGCHC | 1 cut(s) | 477 |
| MluCI | AATT | 2 cut(s) | 398, 570 |
| MlyI | GAGTC | 1 cut(s) | 494 |
| MmeI | TCCRAC | 1 cut(s) | 291 |
| MroXI | GAANNNNTTC | 1 cut(s) | 54 |
| MseI | TTAA | 4 cut(s) | 129, 255, 458, 582 |
| MslI | CAYNNNNRTG | 1 cut(s) | 138 |
| MspI | CCGG | 1 cut(s) | 236 |
| MspR9I | CCNGG | 1 cut(s) | 372 |
| MunI | CAATTG | 1 cut(s) | 398 |
| MvaI | CCWGG | 1 cut(s) | 372 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 791, 800 |
| NdeI | CATATG | 1 cut(s) | 387 |
| NdeII | GATC | 3 cut(s) | 164, 382, 811 |
| NlaIII | CATG | 6 cut(s) | 137, 143, 317, 383, 688, 819 |
| NlaIV | GGNNCC | 1 cut(s) | 804 |
| NspI | RCATGY | 2 cut(s) | 143, 317 |
| PaeR7I | CTCGAG | 1 cut(s) | 271 |
| PagI | TCATGA | 1 cut(s) | 379 |
| PciI | ACATGT | 1 cut(s) | 313 |
| PciSI | GCTCTTC | 1 cut(s) | 621 |
| PdmI | GAANNNNTTC | 1 cut(s) | 54 |
| PfeI | GAWTC | 1 cut(s) | 740 |
| PkrI | GCNGC | 2 cut(s) | 118, 796 |
| PleI | GAGTC | 1 cut(s) | 494 |
| PpsI | GAGTC | 1 cut(s) | 494 |
| PscI | ACATGT | 1 cut(s) | 313 |
| Psp6I | CCWGG | 1 cut(s) | 370 |
| PspGI | CCWGG | 1 cut(s) | 370 |
| PspN4I | GGNNCC | 1 cut(s) | 804 |
| PspXI | VCTCGAGB | 1 cut(s) | 271 |
| RsaI | GTAC | 1 cut(s) | 593 |
| RsaNI | GTAC | 1 cut(s) | 592 |
| RseI | CAYNNNNRTG | 1 cut(s) | 138 |
| SapI | GCTCTTC | 1 cut(s) | 621 |
| SaqAI | TTAA | 4 cut(s) | 129, 255, 458, 582 |
| SatI | GCNGC | 2 cut(s) | 117, 795 |
| Sau3AI | GATC | 3 cut(s) | 164, 382, 811 |
| SchI | GAGTC | 1 cut(s) | 494 |
| ScrFI | CCNGG | 1 cut(s) | 372 |
| SduI | GDGCHC | 1 cut(s) | 477 |
| SfaNI | GCATC | 2 cut(s) | 100, 601 |
| Sfr274I | CTCGAG | 1 cut(s) | 271 |
| SlaI | CTCGAG | 1 cut(s) | 271 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 138 |
| SmlI | CTYRAG | 3 cut(s) | 271, 519, 555 |
| SmoI | CTYRAG | 3 cut(s) | 271, 519, 555 |
| Sse9I | AATT | 2 cut(s) | 398, 570 |
| SspI | AATATT | 1 cut(s) | 85 |
| SspMI | CTAG | 4 cut(s) | 438, 534, 633, 786 |
| StyD4I | CCNGG | 1 cut(s) | 370 |
| TaiI | ACGT | 2 cut(s) | 13, 360 |
| TaqI | TCGA | 3 cut(s) | 208, 272, 321 |
| TasI | AATT | 2 cut(s) | 398, 570 |
| TfiI | GAWTC | 1 cut(s) | 740 |
| Tru1I | TTAA | 4 cut(s) | 129, 255, 458, 582 |
| Tru9I | TTAA | 4 cut(s) | 129, 255, 458, 582 |
| TseI | GCWGC | 2 cut(s) | 116, 794 |
| TspDTI | ATGAA | 1 cut(s) | 63 |
| TspGWI | ACGGA | 1 cut(s) | 739 |
| XapI | RAATTY | 1 cut(s) | 570 |
| XceI | RCATGY | 2 cut(s) | 143, 317 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 274 |
| XhoI | CTCGAG | 1 cut(s) | 271 |
| XmnI | GAANNNNTTC | 1 cut(s) | 54 |
| XspI | CTAG | 4 cut(s) | 438, 534, 633, 786 |