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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 462 |
| AccB1I | GGYRCC | 2 cut(s) | 22, 242 |
| AccII | CGCG | 1 cut(s) | 284 |
| AciI | CCGC | 2 cut(s) | 305, 344 |
| AcsI | RAATTY | 4 cut(s) | 56, 225, 507, 595 |
| AflIII | ACRYGT | 1 cut(s) | 337 |
| AgsI | TTSAA | 3 cut(s) | 230, 299, 607 |
| AhlI | ACTAGT | 1 cut(s) | 380 |
| AluBI | AGCT | 1 cut(s) | 411 |
| AluI | AGCT | 1 cut(s) | 411 |
| Alw26I | GTCTC | 1 cut(s) | 684 |
| AoxI | GGCC | 1 cut(s) | 273 |
| ApoI | RAATTY | 4 cut(s) | 56, 225, 507, 595 |
| AseI | ATTAAT | 1 cut(s) | 543 |
| AspLEI | GCGC | 2 cut(s) | 151, 286 |
| AspS9I | GGNCC | 2 cut(s) | 274, 502 |
| AsuHPI | GGTGA | 2 cut(s) | 116, 623 |
| AvaII | GGWCC | 1 cut(s) | 502 |
| BaeGI | GKGCMC | 1 cut(s) | 27 |
| BanI | GGYRCC | 2 cut(s) | 22, 242 |
| BbvCI | CCTCAGC | 1 cut(s) | 423 |
| BccI | CCATC | 1 cut(s) | 608 |
| BceAI | ACGGC | 1 cut(s) | 337 |
| BclI | TGATCA | 1 cut(s) | 121 |
| BcoDI | GTCTC | 1 cut(s) | 684 |
| BcuI | ACTAGT | 1 cut(s) | 380 |
| BfaI | CTAG | 3 cut(s) | 381, 408, 629 |
| BfoI | RGCGCY | 1 cut(s) | 152 |
| Bme18I | GGWCC | 1 cut(s) | 502 |
| BmgT120I | GGNCC | 2 cut(s) | 274, 502 |
| BmiI | GGNNCC | 5 cut(s) | 13, 24, 171, 244, 429 |
| BmsI | GCATC | 1 cut(s) | 313 |
| Bpu10I | CCTNAGC | 1 cut(s) | 423 |
| BpuEI | CTTGAG | 2 cut(s) | 18, 451 |
| BsaWI | WCCGGW | 1 cut(s) | 553 |
| Bse3DI | GCAATG | 1 cut(s) | 327 |
| BseGI | GGATG | 3 cut(s) | 328, 352, 406 |
| BseMI | GCAATG | 1 cut(s) | 327 |
| BseMII | CTCAG | 1 cut(s) | 414 |
| BseRI | GAGGAG | 2 cut(s) | 329, 404 |
| BseSI | GKGCMC | 1 cut(s) | 27 |
| BsgI | GTGCAG | 2 cut(s) | 71, 288 |
| Bsh1236I | CGCG | 1 cut(s) | 284 |
| BshFI | GGCC | 1 cut(s) | 275 |
| BshNI | GGYRCC | 2 cut(s) | 22, 242 |
| BsiSI | CCGG | 1 cut(s) | 554 |
| BsmAI | GTCTC | 1 cut(s) | 684 |
| BsmBI | CGTCTC | 1 cut(s) | 684 |
| BsnI | GGCC | 1 cut(s) | 275 |
| Bsp1286I | GDGCHC | 1 cut(s) | 27 |
| Bsp143I | GATC | 3 cut(s) | 61, 121, 487 |
| BspACI | CCGC | 2 cut(s) | 305, 344 |
| BspANI | GGCC | 1 cut(s) | 275 |
| BspCNI | CTCAG | 1 cut(s) | 415 |
| BspFNI | CGCG | 1 cut(s) | 284 |
| BspHI | TCATGA | 1 cut(s) | 160 |
| BspLI | GGNNCC | 5 cut(s) | 13, 24, 171, 244, 429 |
| BspT107I | GGYRCC | 2 cut(s) | 22, 242 |
| BsrDI | GCAATG | 1 cut(s) | 327 |
| BssMI | GATC | 3 cut(s) | 61, 121, 487 |
| Bst4CI | ACNGT | 1 cut(s) | 699 |
| Bst6I | CTCTTC | 1 cut(s) | 294 |
| BstC8I | GCNNGC | 1 cut(s) | 96 |
| BstDEI | CTNAG | 1 cut(s) | 423 |
| BstF5I | GGATG | 3 cut(s) | 328, 352, 406 |
| BstFNI | CGCG | 1 cut(s) | 284 |
| BstH2I | RGCGCY | 1 cut(s) | 152 |
| BstHHI | GCGC | 2 cut(s) | 151, 286 |
| BstKTI | GATC | 3 cut(s) | 64, 124, 490 |
| BstMAI | GTCTC | 1 cut(s) | 684 |
| BstMBI | GATC | 3 cut(s) | 61, 121, 487 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 251, 281 |
| BstSLI | GKGCMC | 1 cut(s) | 27 |
| BstUI | CGCG | 1 cut(s) | 284 |
| BsuRI | GGCC | 1 cut(s) | 275 |
| BtsCI | GGATG | 3 cut(s) | 328, 352, 406 |
| BtsI | GCAGTG | 1 cut(s) | 276 |
| BtsIMutI | CAGTG | 1 cut(s) | 276 |
| Cac8I | GCNNGC | 1 cut(s) | 96 |
| CciI | TCATGA | 1 cut(s) | 160 |
| CfoI | GCGC | 2 cut(s) | 151, 286 |
| Cfr13I | GGNCC | 2 cut(s) | 274, 502 |
| CviAII | CATG | 2 cut(s) | 161, 446 |
| CviJI | RGCY | 5 cut(s) | 98, 275, 352, 411, 422 |
| CviKI_1 | RGCY | 5 cut(s) | 98, 275, 352, 411, 422 |
| DdeI | CTNAG | 1 cut(s) | 423 |
| DpnI | GATC | 3 cut(s) | 63, 123, 489 |
| DpnII | GATC | 3 cut(s) | 61, 121, 487 |
| Eam1104I | CTCTTC | 1 cut(s) | 294 |
| EarI | CTCTTC | 1 cut(s) | 294 |
| Eco47I | GGWCC | 1 cut(s) | 502 |
| EcoRI | GAATTC | 2 cut(s) | 225, 595 |
| Esp3I | CGTCTC | 1 cut(s) | 684 |
| FaeI | CATG | 2 cut(s) | 164, 449 |
| FatI | CATG | 2 cut(s) | 160, 445 |
| FbaI | TGATCA | 1 cut(s) | 121 |
| FokI | GGATG | 3 cut(s) | 335, 359, 413 |
| FspBI | CTAG | 3 cut(s) | 381, 408, 629 |
| GlaI | GCGC | 2 cut(s) | 150, 285 |
| HaeII | RGCGCY | 1 cut(s) | 152 |
| HaeIII | GGCC | 1 cut(s) | 275 |
| HapII | CCGG | 1 cut(s) | 554 |
| HhaI | GCGC | 2 cut(s) | 151, 286 |
| Hin1II | CATG | 2 cut(s) | 164, 449 |
| Hin6I | GCGC | 2 cut(s) | 149, 284 |
| HinP1I | GCGC | 2 cut(s) | 149, 284 |
| HinfI | GANTC | 2 cut(s) | 404, 550 |
| HpaII | CCGG | 1 cut(s) | 554 |
| HphI | GGTGA | 2 cut(s) | 116, 623 |
| Hpy188I | TCNGA | 6 cut(s) | 121, 174, 492, 525, 538, 549 |
| Hpy188III | TCNNGA | 4 cut(s) | 77, 161, 213, 476 |
| HpyCH4III | ACNGT | 1 cut(s) | 699 |
| HpyCH4IV | ACGT | 2 cut(s) | 73, 337 |
| HpyCH4V | TGCA | 2 cut(s) | 52, 269 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 251, 281 |
| HpyF3I | CTNAG | 1 cut(s) | 423 |
| HpySE526I | ACGT | 2 cut(s) | 73, 337 |
| Hsp92II | CATG | 2 cut(s) | 164, 449 |
| HspAI | GCGC | 2 cut(s) | 149, 284 |
| Ksp22I | TGATCA | 1 cut(s) | 121 |
| Kzo9I | GATC | 3 cut(s) | 61, 121, 487 |
| LweI | GCATC | 1 cut(s) | 313 |
| MaeI | CTAG | 3 cut(s) | 381, 408, 629 |
| MaeII | ACGT | 2 cut(s) | 73, 337 |
| MaeIII | GTNAC | 1 cut(s) | 556 |
| MalI | GATC | 3 cut(s) | 63, 123, 489 |
| MboI | GATC | 3 cut(s) | 61, 121, 487 |
| MboII | GAAGA | 2 cut(s) | 311, 644 |
| MfeI | CAATTG | 2 cut(s) | 362, 438 |
| MhlI | GDGCHC | 1 cut(s) | 27 |
| MlyI | GAGTC | 1 cut(s) | 544 |
| MmeI | TCCRAC | 3 cut(s) | 126, 197, 300 |
| MseI | TTAA | 2 cut(s) | 495, 543 |
| MslI | CAYNNNNRTG | 1 cut(s) | 383 |
| MspI | CCGG | 1 cut(s) | 554 |
| MunI | CAATTG | 2 cut(s) | 362, 438 |
| MvnI | CGCG | 1 cut(s) | 284 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 251, 281 |
| NdeII | GATC | 3 cut(s) | 61, 121, 487 |
| NlaIII | CATG | 2 cut(s) | 164, 449 |
| NlaIV | GGNNCC | 5 cut(s) | 13, 24, 171, 244, 429 |
| PagI | TCATGA | 1 cut(s) | 160 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 70 |
| PfeI | GAWTC | 1 cut(s) | 404 |
| PleI | GAGTC | 1 cut(s) | 544 |
| PpsI | GAGTC | 1 cut(s) | 544 |
| PshBI | ATTAAT | 1 cut(s) | 543 |
| PsiI | TTATAA | 1 cut(s) | 462 |
| PspN4I | GGNNCC | 5 cut(s) | 13, 24, 171, 244, 429 |
| PspPI | GGNCC | 2 cut(s) | 274, 502 |
| RseI | CAYNNNNRTG | 1 cut(s) | 383 |
| SaqAI | TTAA | 2 cut(s) | 495, 543 |
| Sau3AI | GATC | 3 cut(s) | 61, 121, 487 |
| Sau96I | GGNCC | 2 cut(s) | 274, 502 |
| SchI | GAGTC | 1 cut(s) | 544 |
| SduI | GDGCHC | 1 cut(s) | 27 |
| SetI | ASST | 6 cut(s) | 76, 168, 340, 413, 579, 613 |
| SfaNI | GCATC | 1 cut(s) | 313 |
| SinI | GGWCC | 1 cut(s) | 502 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 383 |
| SmlI | CTYRAG | 2 cut(s) | 33, 466 |
| SmoI | CTYRAG | 2 cut(s) | 33, 466 |
| SpeI | ACTAGT | 1 cut(s) | 380 |
| SsiI | CCGC | 2 cut(s) | 305, 344 |
| SspI | AATATT | 1 cut(s) | 112 |
| SspMI | CTAG | 3 cut(s) | 381, 408, 629 |
| TaaI | ACNGT | 1 cut(s) | 699 |
| TaiI | ACGT | 2 cut(s) | 76, 340 |
| TaqI | TCGA | 2 cut(s) | 85, 517 |
| TfiI | GAWTC | 1 cut(s) | 404 |
| Tru1I | TTAA | 2 cut(s) | 495, 543 |
| Tru9I | TTAA | 2 cut(s) | 495, 543 |
| TscAI | CASTG | 1 cut(s) | 276 |
| TspDTI | ATGAA | 4 cut(s) | 149, 185, 434, 608 |
| TspRI | CASTG | 1 cut(s) | 276 |
| VpaK11BI | GGWCC | 1 cut(s) | 502 |
| VspI | ATTAAT | 1 cut(s) | 543 |
| XapI | RAATTY | 4 cut(s) | 56, 225, 507, 595 |
| XspI | CTAG | 3 cut(s) | 381, 408, 629 |