Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 464 |
| AclWI | GGATC | 1 cut(s) | 824 |
| AcsI | RAATTY | 4 cut(s) | 153, 352, 388, 429 |
| AfaI | GTAC | 1 cut(s) | 914 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 589 |
| AgsI | TTSAA | 3 cut(s) | 394, 635, 641 |
| AjiI | CACGTC | 1 cut(s) | 320 |
| AjnI | CCWGG | 2 cut(s) | 273, 397 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 523, 555 |
| AluBI | AGCT | 4 cut(s) | 304, 365, 383, 943 |
| AluI | AGCT | 4 cut(s) | 304, 365, 383, 943 |
| Alw26I | GTCTC | 2 cut(s) | 614, 641 |
| AlwI | GGATC | 1 cut(s) | 824 |
| Ama87I | CYCGRG | 1 cut(s) | 549 |
| AoxI | GGCC | 2 cut(s) | 84, 580 |
| ApeKI | GCWGC | 1 cut(s) | 940 |
| ApoI | RAATTY | 4 cut(s) | 153, 352, 388, 429 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 914 |
| AspLEI | GCGC | 1 cut(s) | 465 |
| AspS9I | GGNCC | 3 cut(s) | 30, 85, 581 |
| AsuC2I | CCSGG | 2 cut(s) | 550, 551 |
| AsuHPI | GGTGA | 5 cut(s) | 3, 428, 629, 730, 839 |
| AvaI | CYCGRG | 1 cut(s) | 549 |
| AvaII | GGWCC | 1 cut(s) | 30 |
| BbvI | GCAGC | 1 cut(s) | 952 |
| BccI | CCATC | 4 cut(s) | 110, 158, 214, 684 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 669, 703 |
| BciT130I | CCWGG | 2 cut(s) | 275, 399 |
| BcnI | CCSGG | 2 cut(s) | 550, 551 |
| BcoDI | GTCTC | 2 cut(s) | 614, 641 |
| BfaI | CTAG | 3 cut(s) | 246, 375, 876 |
| BfmI | CTRYAG | 2 cut(s) | 78, 855 |
| BglII | AGATCT | 1 cut(s) | 74 |
| BisI | GCNGC | 1 cut(s) | 941 |
| BlsI | GCNGC | 1 cut(s) | 942 |
| BmcAI | AGTACT | 1 cut(s) | 914 |
| Bme1390I | CCNGG | 4 cut(s) | 275, 399, 550, 551 |
| Bme18I | GGWCC | 1 cut(s) | 30 |
| BmeT110I | CYCGRG | 1 cut(s) | 549 |
| BmgBI | CACGTC | 1 cut(s) | 320 |
| BmgT120I | GGNCC | 3 cut(s) | 30, 85, 581 |
| BmiI | GGNNCC | 2 cut(s) | 425, 583 |
| BmrFI | CCNGG | 4 cut(s) | 275, 399, 550, 551 |
| BpuMI | CCSGG | 2 cut(s) | 550, 551 |
| Bsa29I | ATCGAT | 1 cut(s) | 679 |
| BsaAI | YACGTR | 1 cut(s) | 260 |
| BsaBI | GATNNNNATC | 1 cut(s) | 168 |
| BsaJI | CCNNGG | 2 cut(s) | 26, 549 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 43, 73, 523, 553 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 589 |
| Bse118I | RCCGGY | 1 cut(s) | 438 |
| Bse1I | ACTGG | 1 cut(s) | 829 |
| Bse3DI | GCAATG | 1 cut(s) | 477 |
| Bse8I | GATNNNNATC | 1 cut(s) | 168 |
| BseBI | CCWGG | 2 cut(s) | 275, 399 |
| BseCI | ATCGAT | 1 cut(s) | 679 |
| BseDI | CCNNGG | 2 cut(s) | 26, 549 |
| BseGI | GGATG | 1 cut(s) | 169 |
| BseJI | GATNNNNATC | 1 cut(s) | 168 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 589 |
| BseMI | GCAATG | 1 cut(s) | 477 |
| BseMII | CTCAG | 1 cut(s) | 756 |
| BseNI | ACTGG | 1 cut(s) | 829 |
| BseRI | GAGGAG | 1 cut(s) | 544 |
| BseXI | GCAGC | 1 cut(s) | 952 |
| BshFI | GGCC | 2 cut(s) | 86, 582 |
| BshVI | ATCGAT | 1 cut(s) | 679 |
| BsiHKCI | CYCGRG | 1 cut(s) | 549 |
| BsiSI | CCGG | 2 cut(s) | 439, 550 |
| BslFI | GGGAC | 1 cut(s) | 330 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 589 |
| BsmAI | GTCTC | 2 cut(s) | 614, 641 |
| BsmBI | CGTCTC | 1 cut(s) | 614 |
| BsmFI | GGGAC | 1 cut(s) | 330 |
| BsmI | GAATGC | 1 cut(s) | 495 |
| BsnI | GGCC | 2 cut(s) | 86, 582 |
| BsoBI | CYCGRG | 1 cut(s) | 549 |
| Bsp143I | GATC | 3 cut(s) | 74, 680, 829 |
| BspANI | GGCC | 2 cut(s) | 86, 582 |
| BspCNI | CTCAG | 1 cut(s) | 757 |
| BspDI | ATCGAT | 1 cut(s) | 679 |
| BspHI | TCATGA | 1 cut(s) | 712 |
| BspLI | GGNNCC | 2 cut(s) | 425, 583 |
| BspPI | GGATC | 1 cut(s) | 824 |
| BsrDI | GCAATG | 1 cut(s) | 477 |
| BsrFI | RCCGGY | 1 cut(s) | 438 |
| BsrI | ACTGG | 1 cut(s) | 829 |
| BssAI | RCCGGY | 1 cut(s) | 438 |
| BssECI | CCNNGG | 2 cut(s) | 26, 549 |
| BssMI | GATC | 3 cut(s) | 74, 680, 829 |
| Bst2UI | CCWGG | 2 cut(s) | 275, 399 |
| Bst4CI | ACNGT | 3 cut(s) | 577, 804, 929 |
| Bst6I | CTCTTC | 1 cut(s) | 205 |
| BstBAI | YACGTR | 1 cut(s) | 260 |
| BstC8I | GCNNGC | 1 cut(s) | 194 |
| BstDEI | CTNAG | 3 cut(s) | 269, 765, 881 |
| BstDSI | CCRYGG | 1 cut(s) | 26 |
| BstF5I | GGATG | 1 cut(s) | 169 |
| BstHHI | GCGC | 1 cut(s) | 465 |
| BstKTI | GATC | 3 cut(s) | 77, 683, 832 |
| BstMAI | GTCTC | 2 cut(s) | 614, 641 |
| BstMBI | GATC | 3 cut(s) | 74, 680, 829 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 92, 371, 380 |
| BstNI | CCWGG | 2 cut(s) | 275, 399 |
| BstSCI | CCNGG | 4 cut(s) | 273, 397, 548, 549 |
| BstSFI | CTRYAG | 2 cut(s) | 78, 855 |
| BstSNI | TACGTA | 1 cut(s) | 260 |
| BstV1I | GCAGC | 1 cut(s) | 952 |
| BstX2I | RGATCY | 1 cut(s) | 74 |
| BstYI | RGATCY | 1 cut(s) | 74 |
| Bsu15I | ATCGAT | 1 cut(s) | 679 |
| BsuRI | GGCC | 2 cut(s) | 86, 582 |
| BsuTUI | ATCGAT | 1 cut(s) | 679 |
| BtgI | CCRYGG | 1 cut(s) | 26 |
| BtgZI | GCGATG | 1 cut(s) | 264 |
| BtrI | CACGTC | 1 cut(s) | 320 |
| BtsCI | GGATG | 1 cut(s) | 169 |
| BtsIMutI | CAGTG | 1 cut(s) | 822 |
| Cac8I | GCNNGC | 1 cut(s) | 194 |
| CciI | TCATGA | 1 cut(s) | 712 |
| CfoI | GCGC | 1 cut(s) | 465 |
| Cfr10I | RCCGGY | 1 cut(s) | 438 |
| Cfr13I | GGNCC | 3 cut(s) | 30, 85, 581 |
| Cfr9I | CCCGGG | 1 cut(s) | 549 |
| ClaI | ATCGAT | 1 cut(s) | 679 |
| Csp6I | GTAC | 1 cut(s) | 913 |
| CviAII | CATG | 1 cut(s) | 713 |
| CviQI | GTAC | 1 cut(s) | 913 |
| DdeI | CTNAG | 3 cut(s) | 269, 765, 881 |
| DpnI | GATC | 3 cut(s) | 76, 682, 831 |
| DpnII | GATC | 3 cut(s) | 74, 680, 829 |
| Eam1104I | CTCTTC | 1 cut(s) | 205 |
| EarI | CTCTTC | 1 cut(s) | 205 |
| Eco105I | TACGTA | 1 cut(s) | 260 |
| Eco47I | GGWCC | 1 cut(s) | 30 |
| Eco88I | CYCGRG | 1 cut(s) | 549 |
| EcoRII | CCWGG | 2 cut(s) | 273, 397 |
| Esp3I | CGTCTC | 1 cut(s) | 614 |
| FaeI | CATG | 1 cut(s) | 716 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 262, 294 |
| FaqI | GGGAC | 1 cut(s) | 330 |
| FatI | CATG | 1 cut(s) | 712 |
| FauNDI | CATATG | 1 cut(s) | 198 |
| Fnu4HI | GCNGC | 1 cut(s) | 941 |
| FokI | GGATG | 1 cut(s) | 176 |
| Fsp4HI | GCNGC | 1 cut(s) | 941 |
| FspBI | CTAG | 3 cut(s) | 246, 375, 876 |
| FspI | TGCGCA | 1 cut(s) | 464 |
| GlaI | GCGC | 1 cut(s) | 464 |
| GluI | GCNGC | 1 cut(s) | 941 |
| HaeIII | GGCC | 2 cut(s) | 86, 582 |
| HapII | CCGG | 2 cut(s) | 439, 550 |
| HhaI | GCGC | 1 cut(s) | 465 |
| Hin1II | CATG | 1 cut(s) | 716 |
| Hin6I | GCGC | 1 cut(s) | 463 |
| HinP1I | GCGC | 1 cut(s) | 463 |
| HinfI | GANTC | 3 cut(s) | 8, 127, 307 |
| HpaII | CCGG | 2 cut(s) | 439, 550 |
| HphI | GGTGA | 5 cut(s) | 3, 428, 629, 730, 839 |
| Hpy188I | TCNGA | 5 cut(s) | 74, 152, 526, 766, 920 |
| Hpy188III | TCNNGA | 3 cut(s) | 408, 713, 739 |
| HpyAV | CCTTC | 1 cut(s) | 876 |
| HpyCH4III | ACNGT | 3 cut(s) | 577, 804, 929 |
| HpyCH4IV | ACGT | 3 cut(s) | 259, 319, 623 |
| HpyCH4V | TGCA | 7 cut(s) | 95, 192, 350, 477, 482, 690, 849 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 92, 371, 380 |
| HpyF3I | CTNAG | 3 cut(s) | 269, 765, 881 |
| HpySE526I | ACGT | 3 cut(s) | 259, 319, 623 |
| Hsp92II | CATG | 1 cut(s) | 716 |
| HspAI | GCGC | 1 cut(s) | 463 |
| Kzo9I | GATC | 3 cut(s) | 74, 680, 829 |
| LmnI | GCTCC | 2 cut(s) | 64, 380 |
| Lsp1109I | GCAGC | 1 cut(s) | 952 |
| MaeI | CTAG | 3 cut(s) | 246, 375, 876 |
| MaeII | ACGT | 3 cut(s) | 259, 319, 623 |
| MaeIII | GTNAC | 1 cut(s) | 134 |
| MalI | GATC | 3 cut(s) | 76, 682, 831 |
| MboI | GATC | 3 cut(s) | 74, 680, 829 |
| MboII | GAAGA | 3 cut(s) | 222, 623, 946 |
| MflI | RGATCY | 1 cut(s) | 74 |
| MmeI | TCCRAC | 2 cut(s) | 208, 640 |
| MnlI | CCTC | 9 cut(s) | 154, 354, 522, 709, 737, 771, 780, 843, 900 |
| MroXI | GAANNNNTTC | 1 cut(s) | 914 |
| MseI | TTAA | 1 cut(s) | 967 |
| MspI | CCGG | 2 cut(s) | 439, 550 |
| MspR9I | CCNGG | 4 cut(s) | 275, 399, 550, 551 |
| Mva1269I | GAATGC | 1 cut(s) | 495 |
| MvaI | CCWGG | 2 cut(s) | 275, 399 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 92, 371, 380 |
| NciI | CCSGG | 2 cut(s) | 550, 551 |
| NdeI | CATATG | 1 cut(s) | 198 |
| NdeII | GATC | 3 cut(s) | 74, 680, 829 |
| NlaIII | CATG | 1 cut(s) | 716 |
| NlaIV | GGNNCC | 2 cut(s) | 425, 583 |
| NsbI | TGCGCA | 1 cut(s) | 464 |
| PagI | TCATGA | 1 cut(s) | 712 |
| PctI | GAATGC | 1 cut(s) | 495 |
| PdmI | GAANNNNTTC | 1 cut(s) | 914 |
| PfeI | GAWTC | 3 cut(s) | 8, 127, 307 |
| PkrI | GCNGC | 1 cut(s) | 942 |
| Ppu21I | YACGTR | 1 cut(s) | 260 |
| Psp6I | CCWGG | 2 cut(s) | 273, 397 |
| PspGI | CCWGG | 2 cut(s) | 273, 397 |
| PspN4I | GGNNCC | 2 cut(s) | 425, 583 |
| PspPI | GGNCC | 3 cut(s) | 30, 85, 581 |
| PsuI | RGATCY | 1 cut(s) | 74 |
| RsaI | GTAC | 1 cut(s) | 914 |
| RsaNI | GTAC | 1 cut(s) | 913 |
| SaqAI | TTAA | 1 cut(s) | 967 |
| SatI | GCNGC | 1 cut(s) | 941 |
| Sau3AI | GATC | 3 cut(s) | 74, 680, 829 |
| Sau96I | GGNCC | 3 cut(s) | 30, 85, 581 |
| ScaI | AGTACT | 1 cut(s) | 914 |
| ScrFI | CCNGG | 4 cut(s) | 275, 399, 550, 551 |
| SfcI | CTRYAG | 2 cut(s) | 78, 855 |
| SinI | GGWCC | 1 cut(s) | 30 |
| SmaI | CCCGGG | 1 cut(s) | 551 |
| SnaBI | TACGTA | 1 cut(s) | 260 |
| SspI | AATATT | 1 cut(s) | 289 |
| SspMI | CTAG | 3 cut(s) | 246, 375, 876 |
| StyD4I | CCNGG | 4 cut(s) | 273, 397, 548, 549 |
| TaaI | ACNGT | 3 cut(s) | 577, 804, 929 |
| TaiI | ACGT | 3 cut(s) | 262, 322, 626 |
| TaqI | TCGA | 1 cut(s) | 679 |
| TatI | WGTACW | 1 cut(s) | 912 |
| TfiI | GAWTC | 3 cut(s) | 8, 127, 307 |
| Tru1I | TTAA | 1 cut(s) | 967 |
| Tru9I | TTAA | 1 cut(s) | 967 |
| TscAI | CASTG | 1 cut(s) | 829 |
| TseI | GCWGC | 1 cut(s) | 940 |
| TspDTI | ATGAA | 1 cut(s) | 531 |
| TspMI | CCCGGG | 1 cut(s) | 549 |
| TspRI | CASTG | 1 cut(s) | 829 |
| VpaK11BI | GGWCC | 1 cut(s) | 30 |
| XapI | RAATTY | 4 cut(s) | 153, 352, 388, 429 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 24 |
| XmaI | CCCGGG | 1 cut(s) | 549 |
| XmnI | GAANNNNTTC | 1 cut(s) | 914 |
| XspI | CTAG | 3 cut(s) | 246, 375, 876 |
| ZrmI | AGTACT | 1 cut(s) | 914 |