Rh4AG427000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000044
Physical Location & Seq
Forward (+)
72331953 .. 72338514
6562 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG427000.1

Sequence Viewer

Length: 330 bp
ATGGAAGGTTTCATGCGTATGTTTTCGACTTTCTTCGTCGGTCTCCTGCTTCTGGTGGCTACAGCTGAAATTGAGCTTGCTTCTCCAGAGAATGTCCACATTGAAGATACCATTGAGAATGAGGTATCCACGGAGCTATTTAATCCATTGGTTGCTCAAAGCACTGATAATAGGCTTGCTTTAGTTGATGCATCTATTGATGAGATTGGGCCTATTGATTCAAATGTGACTGTGTTCGCTGGTCCAAGTGAACCACATGTGGAGAGCATAGCTCCAATAGGATCTGCAGCTTCAGAGCTTTCCCAAATAACAAGAAATGGCACAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

11.66

Weight (kDa)

4.05

Isoelectric Point (pI)

51.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000044)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07760 AT5G28823
fragaria_vesca FvH4_1g13572 FvH4_2g03281 FvH4_2g04691 FvH4_2g08332 FvH4_2g08333 FvH4_2g15313 FvH4_2g26101 FvH4_2g29541 FvH4_3g06911 FvH4_3g34351 FvH4_3g43733 FvH4_4g02432 FvH4_4g05601 FvH4_4g08213 FvH4_4g09961 FvH4_4g10131 FvH4_4g20001 FvH4_4g20002 FvH4_5g01051 FvH4_5g01401 FvH4_5g27943 FvH4_6g09220 FvH4_6g17383 FvH4_6g35491 FvH4_6g46421 FvH4_7g04151 FvH4_7g13962 FvH4_7g18611 FvH4_7g19491 FvH4_7g19511 FvH4_7g26562
malus_domestica MD06G1221600.v1.1
pyrus_communis pycom10g21150
rosa_chinensis RchiOBHm_Chr1g0337571 RchiOBHm_Chr2g0168771 RchiOBHm_Chr3g0453631 RchiOBHm_Chr6g0278581
rosa_laevigata RLG00000001899 RLG00000001925 RLG00000002026 RLG00000003410 RLG00000003767 RLG00000004304 RLG00000004473 RLG00000004677 RLG00000006856 RLG00000007994 RLG00000009888 RLG00000011627 RLG00000012174 RLG00000012217 RLG00000013118 RLG00000013736 RLG00000014194 RLG00000014251 RLG00000015011 RLG00000015057 RLG00000015235 RLG00000017416 RLG00000018052 RLG00000018537 RLG00000019968 RLG00000020096 RLG00000020263 RLG00000022606 RLG00000023119 RLG00000028111 RLG00000029686 RLG00000030126 RLG00000031124 RLG00000031236 RLG00000032766 RLG00000033171 RLG00000033548 RLG00000033987 RLG00000034062 RLG00000035115 RLG00000035863
rosa_multiflora Rmu_co8036712.1_g000001 Rmu_co8080248.1_g000001 Rmu_co8208334.1_g000001 Rmu_co8253451.1_g000001 Rmu_co8393241.1_g000001 Rmu_co8522225.1_g000005 Rmu_sc0000060.1_g000030 Rmu_sc0000060.1_g000031 Rmu_sc0000060.1_g000032 Rmu_sc0000090.1_g000008 Rmu_sc0000149.1_g000051 Rmu_sc0000149.1_g000058 Rmu_sc0000309.1_g000050 Rmu_sc0000370.1_g000022 Rmu_sc0000370.1_g000023 Rmu_sc0000370.1_g000024 Rmu_sc0000418.1_g000018 Rmu_sc0000427.1_g000014 Rmu_sc0000427.1_g000015 Rmu_sc0000434.1_g000008 Rmu_sc0000487.1_g000038 Rmu_sc0000487.1_g000039 Rmu_sc0000569.1_g000029 Rmu_sc0000580.1_g000097 Rmu_sc0000595.1_g000068 Rmu_sc0000607.1_g000027 Rmu_sc0000738.1_g000004 Rmu_sc0000758.1_g000001 Rmu_sc0000758.1_g000002 Rmu_sc0000870.1_g000019 Rmu_sc0000924.1_g000040 Rmu_sc0000924.1_g000041 Rmu_sc0000999.1_g000037 Rmu_sc0001001.1_g000001 Rmu_sc0001010.1_g000080 Rmu_sc0001075.1_g000041 Rmu_sc0001097.1_g000016 Rmu_sc0001173.1_g000020 Rmu_sc0001258.1_g000010 Rmu_sc0001425.1_g000031 Rmu_sc0001493.1_g000020 Rmu_sc0001493.1_g000021 Rmu_sc0001644.1_g000024 Rmu_sc0001648.1_g000039 Rmu_sc0001662.1_g000002 Rmu_sc0001849.1_g000046 Rmu_sc0001851.1_g000038 Rmu_sc0001861.1_g000006 Rmu_sc0001899.1_g000008 Rmu_sc0002231.1_g000023 Rmu_sc0002393.1_g000012 Rmu_sc0002515.1_g000010 Rmu_sc0002551.1_g000013 Rmu_sc0002680.1_g000029 Rmu_sc0002700.1_g000030 Rmu_sc0002700.1_g000031 Rmu_sc0002709.1_g000035 Rmu_sc0002779.1_g000017 Rmu_sc0003267.1_g000040 Rmu_sc0003306.1_g000009 Rmu_sc0003338.1_g000014 Rmu_sc0003522.1_g000038 Rmu_sc0003522.1_g000039 Rmu_sc0003653.1_g000031 Rmu_sc0003901.1_g000003 Rmu_sc0003920.1_g000009 Rmu_sc0004014.1_g000009 Rmu_sc0004016.1_g000013 Rmu_sc0004031.1_g000002 Rmu_sc0004106.1_g000001 Rmu_sc0004432.1_g000004 Rmu_sc0004481.1_g000020 Rmu_sc0004874.1_g000005 Rmu_sc0004928.1_g000005 Rmu_sc0005065.1_g000053 Rmu_sc0005091.1_g000005 Rmu_sc0005217.1_g000015 Rmu_sc0005242.1_g000002 Rmu_sc0005300.1_g000011 Rmu_sc0005400.1_g000004 Rmu_sc0005486.1_g000007 Rmu_sc0005527.1_g000015 Rmu_sc0006059.1_g000021 Rmu_sc0006087.1_g000004 Rmu_sc0006184.1_g000006 Rmu_sc0006184.1_g000007 Rmu_sc0006578.1_g000006 Rmu_sc0006730.1_g000010 Rmu_sc0006736.1_g000030 Rmu_sc0006736.1_g000033 Rmu_sc0007333.1_g000018 Rmu_sc0007856.1_g000010 Rmu_sc0008231.1_g000003 Rmu_sc0009862.1_g000012 Rmu_sc0010547.1_g000001 Rmu_sc0010547.1_g000003 Rmu_sc0010632.1_g000012 Rmu_sc0010747.1_g000008 Rmu_sc0011075.1_g000009 Rmu_sc0011565.1_g000004 Rmu_sc0011641.1_g000003 Rmu_sc0013102.1_g000013 Rmu_sc0013160.1_g000006 Rmu_sc0014846.1_g000004 Rmu_sc0017037.1_g000003 Rmu_sc0018203.1_g000001 Rmu_sc0018204.1_g000001 Rmu_sc0018348.1_g000001 Rmu_sc0019354.1_g000002 Rmu_sc0021630.1_g000002 Rmu_sc0022987.1_g000002 Rmu_sc0024469.1_g000005 Rmu_sc0033519.1_g000001 Rmu_sc0033519.1_g000002 Rmu_sc0033519.1_g000003 Rmu_sc0042775.1_g000001 Rmu_ssc0000110.1_g000003 Rmu_ssc0000110.1_g000004 Rmu_ssc0000126.1_g000068 Rmu_ssc0000200.1_g000007 Rmu_ssc0000295.1_g000003 Rmu_ssc0000295.1_g000004 Rmu_ssc0000299.1_g000010 Rmu_ssc0000308.1_g000024 Rmu_ssc0000339.1_g000006 Rmu_ssc0000385.1_g000012 Rmu_ssc0000409.1_g000004 Rmu_ssc0000421.1_g000004
rosa_roxburghii Rroxscaffold_156G00440360 Rroxscaffold_166G00440800 Rroxscaffold_1G00039040 Rroxscaffold_1G00039050 Rroxscaffold_1G00073950 Rroxscaffold_2G00091710 Rroxscaffold_2G00120050 Rroxscaffold_2G00122590 Rroxscaffold_3G00219700 Rroxscaffold_3G00264140 Rroxscaffold_4G00290600 Rroxscaffold_4G00323610 Rroxscaffold_4G00328460 Rroxscaffold_5G00343440 Rroxscaffold_5G00343570 Rroxscaffold_5G00378540 Rroxscaffold_5G00385090 Rroxscaffold_7G00169130 Rroxscaffold_7G00216420
rosa_rugosa Rorug01G0065800 Rorug01G0073500 Rorug01G0091700 Rorug01G0096500 Rorug01G0204700.1 Rorug01G0249100 Rorug01G0333800 Rorug01G0333900 Rorug01G0339500 Rorug01G0431300 Rorug02G0085400 Rorug02G0117500 Rorug02G0130900 Rorug02G0178800 Rorug02G0226700 Rorug02G0336300 Rorug02G0338700 Rorug02G0351400 Rorug02G0459900 Rorug03G0187000 Rorug03G0223700 Rorug03G0291300 Rorug03G0291300 Rorug03G0311100 Rorug03G0316900 Rorug03G0346000 Rorug04G0014500 Rorug04G0014600 Rorug04G0124100 Rorug04G0136500 Rorug04G0302000 Rorug04G0338100 Rorug04G0338200 Rorug04G0413100 Rorug05G0182200 Rorug05G0226500 Rorug05G0273300 Rorug05G0292200 Rorug05G0292200 Rorug05G0392500 Rorug05G0394500 Rorug05G0394600 Rorug05G0505600.1 Rorug06G0351400 Rorug06G0393400 Rorug06G0393600 Rorug06G0470000 Rorug07G0063100 Rorug07G0086800 Rorug07G0109200 Rorug07G0236100
rosa_samantha Rh1AG010800 Rh1AG011100 Rh1AG064900 Rh1AG088000 Rh1AG207100 Rh1AG262000 Rh1AG300800 Rh1BG043000 Rh1BG144600 Rh1BG180700 Rh1BG180800 Rh1BG328800 Rh1BG399400 Rh1CG041400 Rh1CG047300 Rh1CG379700 Rh1DG036500 Rh1DG083000 Rh1DG210700 Rh1DG210800 Rh1DG231100 Rh2AG007900 Rh2AG055500 Rh2AG339100 Rh2AG368100 Rh2BG243300 Rh2BG258900 Rh2BG292000 Rh2BG333500 Rh2BG387300 Rh2BG612800 Rh2BG619100 Rh2CG026500 Rh2CG163600 Rh2CG535700 Rh2DG186400 Rh2DG235000 Rh2DG314500 Rh2DG388500 Rh2DG391400 Rh2DG496900 Rh2DG526700 Rh2DG570700 Rh3AG330700 Rh3BG266900 Rh3CG236000 Rh3CG340400 Rh3DG090000 Rh3DG278400 Rh3DG297600 Rh3DG362600 Rh4AG001300 Rh4AG023300 Rh4AG097100 Rh4AG427000 Rh4BG029400 Rh4BG032400 Rh4BG086000 Rh4BG249200 Rh4CG001900 Rh4CG040600 Rh4CG093000 Rh4CG106300 Rh4CG113200 Rh4CG113900 Rh4DG002300 Rh4DG144400 Rh4DG234200 Rh5AG043700 Rh5AG084900 Rh5AG161500 Rh5AG409000 Rh5AG457200 Rh5AG457900 Rh5AG473700 Rh5AG520600 Rh5BG042100 Rh5BG124100 Rh5BG323500 Rh5BG417200 Rh5BG443700 Rh5BG451500 Rh5BG464900 Rh5BG470400 Rh5BG522500 Rh5CG068800 Rh5CG178300 Rh5CG231000 Rh5CG258600 Rh5CG394500 Rh5CG473700 Rh5DG164700 Rh5DG235400 Rh5DG261300 Rh5DG304900 Rh5DG334500 Rh5DG424300 Rh5DG458400 Rh5DG478600 Rh5DG552300 Rh5DG552700 Rh6AG037000 Rh6AG042100 Rh6AG255500 Rh6AG283400 Rh6AG291800 Rh6BG049600 Rh6BG080700 Rh6BG114600 Rh6BG128900 Rh6BG352500 Rh6CG052400 Rh6CG112900 Rh6CG113000 Rh6CG131300 Rh6CG157700 Rh6CG243200 Rh6CG254100 Rh6CG275700 Rh6CG299700 Rh6CG309100 Rh6CG317600 Rh6CG342600 Rh6CG471900 Rh6DG038200 Rh6DG102300 Rh6DG114400 Rh6DG225900 Rh6DG292900 Rh6DG320700 Rh6DG512800 Rh7AG217700 Rh7AG313900 Rh7AG446000 Rh7AG472600 Rh7BG223100 Rh7BG349900 Rh7BG352000 Rh7CG160200 Rh7CG233900 Rh7CG242700 Rh7CG273900 Rh7CG306400 Rh7CG322200 Rh7DG053800 Rh7DG077800 Rh7DG227700 Rh7DG404800
rosa_wichuraiana Rw0G003990 Rw2G022110 Rw2G024890 Rw6G005700 Rw7G008770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 289
AcuI CTGAAG 1 cut(s) 276
AfiI CCNNNNNNNGG 1 cut(s) 52
AflIII ACRYGT 1 cut(s) 256
AgsI TTSAA 2 cut(s) 104, 222
AluBI AGCT 6 cut(s) 65, 76, 136, 272, 290, 298
AluI AGCT 6 cut(s) 65, 76, 136, 272, 290, 298
Alw26I GTCTC 1 cut(s) 47
AlwI GGATC 1 cut(s) 289
AoxI GGCC 1 cut(s) 209
ApeKI GCWGC 1 cut(s) 287
AspS9I GGNCC 2 cut(s) 209, 242
AvaII GGWCC 1 cut(s) 242
BbvI GCAGC 1 cut(s) 299
BciVI GTATCC 1 cut(s) 136
BcoDI GTCTC 1 cut(s) 47
BfmI CTRYAG 2 cut(s) 60, 285
BfuI GTATCC 1 cut(s) 136
BisI GCNGC 1 cut(s) 288
BlsI GCNGC 1 cut(s) 289
Bme18I GGWCC 1 cut(s) 242
BmgT120I GGNCC 2 cut(s) 209, 242
BmsI GCATC 2 cut(s) 178, 200
BplI GAGNNNNNCTC 2 cut(s) 256, 288
BpmI CTGGAG 1 cut(s) 69
BsaI GGTCTC 1 cut(s) 47
BsaJI CCNNGG 1 cut(s) 129
Bsc4I CCNNNNNNNGG 1 cut(s) 52
BseDI CCNNGG 1 cut(s) 129
BseLI CCNNNNNNNGG 1 cut(s) 52
BseXI GCAGC 1 cut(s) 299
BshFI GGCC 1 cut(s) 211
BslI CCNNNNNNNGG 1 cut(s) 52
BsmAI GTCTC 1 cut(s) 47
BsnI GGCC 1 cut(s) 211
Bso31I GGTCTC 1 cut(s) 47
Bsp143I GATC 1 cut(s) 281
BspANI GGCC 1 cut(s) 211
BspMAI CTGCAG 1 cut(s) 289
BspPI GGATC 1 cut(s) 289
BspTNI GGTCTC 1 cut(s) 47
BssECI CCNNGG 1 cut(s) 129
BssMI GATC 1 cut(s) 281
Bst4CI ACNGT 1 cut(s) 232
BstC8I GCNNGC 2 cut(s) 78, 177
BstDSI CCRYGG 1 cut(s) 129
BstKTI GATC 1 cut(s) 284
BstMAI GTCTC 1 cut(s) 47
BstMBI GATC 1 cut(s) 281
BstNSI RCATGY 1 cut(s) 260
BstSFI CTRYAG 2 cut(s) 60, 285
BstV1I GCAGC 1 cut(s) 299
BstX2I RGATCY 1 cut(s) 281
BstYI RGATCY 1 cut(s) 281
BsuI GTATCC 1 cut(s) 136
BsuRI GGCC 1 cut(s) 211
BtgI CCRYGG 1 cut(s) 129
BtsIMutI CAGTG 1 cut(s) 162
Cac8I GCNNGC 2 cut(s) 78, 177
Cfr13I GGNCC 2 cut(s) 209, 242
CviAII CATG 2 cut(s) 13, 257
CviJI RGCY 9 cut(s) 59, 65, 76, 136, 175, 211, 272, 290, 298
CviKI_1 RGCY 9 cut(s) 59, 65, 76, 136, 175, 211, 272, 290, 298
DpnI GATC 1 cut(s) 283
DpnII GATC 1 cut(s) 281
Eco31I GGTCTC 1 cut(s) 47
Eco47I GGWCC 1 cut(s) 242
Eco57I CTGAAG 1 cut(s) 276
EcoT22I ATGCAT 1 cut(s) 193
FaeI CATG 2 cut(s) 16, 260
FaiI YATR 4 cut(s) 14, 20, 258, 269
FatI CATG 2 cut(s) 12, 256
Fnu4HI GCNGC 1 cut(s) 288
Fsp4HI GCNGC 1 cut(s) 288
GluI GCNGC 1 cut(s) 288
GsuI CTGGAG 1 cut(s) 69
HaeIII GGCC 1 cut(s) 211
Hin1II CATG 2 cut(s) 16, 260
HinfI GANTC 1 cut(s) 218
Hpy166II GTNNAC 2 cut(s) 97, 251
Hpy188I TCNGA 2 cut(s) 295, 329
Hpy188III TCNNGA 1 cut(s) 86
Hpy8I GTNNAC 2 cut(s) 97, 251
Hpy99I CGWCG 1 cut(s) 41
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4V TGCA 2 cut(s) 191, 287
Hsp92II CATG 2 cut(s) 16, 260
Kzo9I GATC 1 cut(s) 281
LmnI GCTCC 2 cut(s) 133, 277
LpnPI CCDG 4 cut(s) 38, 59, 99, 225
Lsp1109I GCAGC 1 cut(s) 299
LweI GCATC 2 cut(s) 178, 200
MaeIII GTNAC 1 cut(s) 226
MalI GATC 1 cut(s) 283
MboI GATC 1 cut(s) 281
MboII GAAGA 2 cut(s) 25, 116
MflI RGATCY 1 cut(s) 281
MluCI AATT 1 cut(s) 69
MnlI CCTC 1 cut(s) 115
Mph1103I ATGCAT 1 cut(s) 193
MseI TTAA 1 cut(s) 141
MslI CAYNNNNRTG 1 cut(s) 17
MspA1I CMGCKG 1 cut(s) 65
NdeII GATC 1 cut(s) 281
NlaIII CATG 2 cut(s) 16, 260
NmuCI GTSAC 1 cut(s) 226
NsiI ATGCAT 1 cut(s) 193
NspI RCATGY 1 cut(s) 260
PciI ACATGT 1 cut(s) 256
PfeI GAWTC 1 cut(s) 218
PkrI GCNGC 1 cut(s) 289
PscI ACATGT 1 cut(s) 256
PspPI GGNCC 2 cut(s) 209, 242
PstI CTGCAG 1 cut(s) 289
PsuI RGATCY 1 cut(s) 281
PvuII CAGCTG 1 cut(s) 65
RseI CAYNNNNRTG 1 cut(s) 17
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 1 cut(s) 288
Sau3AI GATC 1 cut(s) 281
Sau96I GGNCC 2 cut(s) 209, 242
SetI ASST 8 cut(s) 10, 67, 78, 126, 138, 274, 292, 300
SfaNI GCATC 2 cut(s) 178, 200
SfcI CTRYAG 2 cut(s) 60, 285
SinI GGWCC 1 cut(s) 242
SmiMI CAYNNNNRTG 1 cut(s) 17
Sse9I AATT 1 cut(s) 69
TaaI ACNGT 1 cut(s) 232
TaqI TCGA 1 cut(s) 26
TaqII GACCGA 1 cut(s) 29
TasI AATT 1 cut(s) 69
TfiI GAWTC 1 cut(s) 218
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TscAI CASTG 1 cut(s) 169
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 1 cut(s) 287
Tsp45I GTSAC 1 cut(s) 226
TspGWI ACGGA 1 cut(s) 146
TspRI CASTG 1 cut(s) 169
VpaK11BI GGWCC 1 cut(s) 242
XceI RCATGY 1 cut(s) 260
Zsp2I ATGCAT 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.