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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 53, 326 |
| AclWI | GGATC | 2 cut(s) | 443, 456 |
| AcsI | RAATTY | 2 cut(s) | 454, 488 |
| AcuI | CTGAAG | 1 cut(s) | 203 |
| AfaI | GTAC | 1 cut(s) | 400 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 116 |
| AgsI | TTSAA | 2 cut(s) | 36, 396 |
| AjnI | CCWGG | 2 cut(s) | 352, 444 |
| AjuI | GAANNNNNNNTTGG | 3 cut(s) | 28, 206, 238 |
| AluBI | AGCT | 1 cut(s) | 523 |
| AluI | AGCT | 1 cut(s) | 523 |
| Alw26I | GTCTC | 1 cut(s) | 38 |
| AlwI | GGATC | 2 cut(s) | 443, 456 |
| AoxI | GGCC | 1 cut(s) | 192 |
| ApeKI | GCWGC | 1 cut(s) | 323 |
| ApoI | RAATTY | 2 cut(s) | 454, 488 |
| AsuC2I | CCSGG | 1 cut(s) | 110 |
| BamHI | GGATCC | 1 cut(s) | 448 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 201, 233 |
| BbsI | GAAGAC | 1 cut(s) | 160 |
| BbvI | GCAGC | 1 cut(s) | 310 |
| BciT130I | CCWGG | 2 cut(s) | 354, 446 |
| BcnI | CCSGG | 1 cut(s) | 110 |
| BcoDI | GTCTC | 1 cut(s) | 38 |
| BisI | GCNGC | 2 cut(s) | 324, 327 |
| BlsI | GCNGC | 2 cut(s) | 325, 328 |
| Bme1390I | CCNGG | 3 cut(s) | 110, 354, 446 |
| BmiI | GGNNCC | 4 cut(s) | 264, 387, 450, 462 |
| BmrFI | CCNGG | 3 cut(s) | 110, 354, 446 |
| BmsI | GCATC | 1 cut(s) | 265 |
| BpiI | GAAGAC | 1 cut(s) | 160 |
| BpuMI | CCSGG | 1 cut(s) | 110 |
| BsaBI | GATNNNNATC | 1 cut(s) | 251 |
| BsaJI | CCNNGG | 3 cut(s) | 108, 179, 444 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 116 |
| Bse3DI | GCAATG | 1 cut(s) | 289 |
| Bse8I | GATNNNNATC | 1 cut(s) | 251 |
| BseBI | CCWGG | 2 cut(s) | 354, 446 |
| BseDI | CCNNGG | 3 cut(s) | 108, 179, 444 |
| BseGI | GGATG | 1 cut(s) | 252 |
| BseJI | GATNNNNATC | 1 cut(s) | 251 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 116 |
| BseMI | GCAATG | 1 cut(s) | 289 |
| BseMII | CTCAG | 2 cut(s) | 120, 326 |
| BseRI | GAGGAG | 1 cut(s) | 494 |
| BseXI | GCAGC | 1 cut(s) | 310 |
| BseYI | CCCAGC | 1 cut(s) | 60 |
| BshFI | GGCC | 1 cut(s) | 194 |
| BsiSI | CCGG | 1 cut(s) | 110 |
| BslFI | GGGAC | 1 cut(s) | 427 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 116 |
| BsmAI | GTCTC | 1 cut(s) | 38 |
| BsmFI | GGGAC | 1 cut(s) | 427 |
| BsnI | GGCC | 1 cut(s) | 194 |
| Bsp143I | GATC | 1 cut(s) | 448 |
| BspACI | CCGC | 2 cut(s) | 53, 326 |
| BspANI | GGCC | 1 cut(s) | 194 |
| BspCNI | CTCAG | 2 cut(s) | 121, 325 |
| BspLI | GGNNCC | 4 cut(s) | 264, 387, 450, 462 |
| BspPI | GGATC | 2 cut(s) | 443, 456 |
| BsrDI | GCAATG | 1 cut(s) | 289 |
| BssECI | CCNNGG | 3 cut(s) | 108, 179, 444 |
| BssMI | GATC | 1 cut(s) | 448 |
| Bst2UI | CCWGG | 2 cut(s) | 354, 446 |
| Bst4CI | ACNGT | 2 cut(s) | 163, 407 |
| BstC8I | GCNNGC | 1 cut(s) | 280 |
| BstDEI | CTNAG | 4 cut(s) | 129, 312, 423, 546 |
| BstF5I | GGATG | 1 cut(s) | 252 |
| BstKTI | GATC | 1 cut(s) | 451 |
| BstMAI | GTCTC | 1 cut(s) | 38 |
| BstMBI | GATC | 1 cut(s) | 448 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 61, 139, 148, 284 |
| BstNI | CCWGG | 2 cut(s) | 354, 446 |
| BstNSI | RCATGY | 1 cut(s) | 146 |
| BstSCI | CCNGG | 3 cut(s) | 108, 352, 444 |
| BstV1I | GCAGC | 1 cut(s) | 310 |
| BstV2I | GAAGAC | 1 cut(s) | 160 |
| BstX2I | RGATCY | 1 cut(s) | 448 |
| BstYI | RGATCY | 1 cut(s) | 448 |
| BsuRI | GGCC | 1 cut(s) | 194 |
| BtsCI | GGATG | 1 cut(s) | 252 |
| BtsIMutI | CAGTG | 1 cut(s) | 159 |
| Cac8I | GCNNGC | 1 cut(s) | 280 |
| CseI | GACGC | 1 cut(s) | 165 |
| Csp6I | GTAC | 1 cut(s) | 399 |
| CviAII | CATG | 2 cut(s) | 40, 143 |
| CviJI | RGCY | 8 cut(s) | 64, 194, 323, 329, 357, 421, 463, 523 |
| CviKI_1 | RGCY | 8 cut(s) | 64, 194, 323, 329, 357, 421, 463, 523 |
| CviQI | GTAC | 1 cut(s) | 399 |
| DdeI | CTNAG | 4 cut(s) | 129, 312, 423, 546 |
| DpnI | GATC | 1 cut(s) | 450 |
| DpnII | GATC | 1 cut(s) | 448 |
| EciI | GGCGGA | 1 cut(s) | 42 |
| Eco57I | CTGAAG | 1 cut(s) | 203 |
| EcoRII | CCWGG | 2 cut(s) | 352, 444 |
| FaeI | CATG | 2 cut(s) | 43, 146 |
| FaiI | YATR | 4 cut(s) | 41, 98, 144, 381 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 28 |
| FaqI | GGGAC | 1 cut(s) | 427 |
| FatI | CATG | 2 cut(s) | 39, 142 |
| Fnu4HI | GCNGC | 2 cut(s) | 324, 327 |
| FokI | GGATG | 1 cut(s) | 239 |
| Fsp4HI | GCNGC | 2 cut(s) | 324, 327 |
| GluI | GCNGC | 2 cut(s) | 324, 327 |
| GsaI | CCCAGC | 1 cut(s) | 64 |
| HaeIII | GGCC | 1 cut(s) | 194 |
| HapII | CCGG | 1 cut(s) | 110 |
| HgaI | GACGC | 1 cut(s) | 165 |
| Hin1II | CATG | 2 cut(s) | 43, 146 |
| HinfI | GANTC | 1 cut(s) | 104 |
| HpaII | CCGG | 1 cut(s) | 110 |
| Hpy166II | GTNNAC | 1 cut(s) | 542 |
| Hpy188I | TCNGA | 2 cut(s) | 205, 340 |
| Hpy188III | TCNNGA | 1 cut(s) | 361 |
| Hpy8I | GTNNAC | 1 cut(s) | 542 |
| Hpy99I | CGWCG | 1 cut(s) | 177 |
| HpyAV | CCTTC | 3 cut(s) | 221, 399, 463 |
| HpyCH4III | ACNGT | 2 cut(s) | 163, 407 |
| HpyCH4IV | ACGT | 1 cut(s) | 207 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 61, 139, 148, 284 |
| HpyF3I | CTNAG | 4 cut(s) | 129, 312, 423, 546 |
| HpySE526I | ACGT | 1 cut(s) | 207 |
| Hsp92II | CATG | 2 cut(s) | 43, 146 |
| Kzo9I | GATC | 1 cut(s) | 448 |
| LmnI | GCTCC | 1 cut(s) | 460 |
| Lsp1109I | GCAGC | 1 cut(s) | 310 |
| LweI | GCATC | 1 cut(s) | 265 |
| MaeII | ACGT | 1 cut(s) | 207 |
| MaeIII | GTNAC | 1 cut(s) | 183 |
| MalI | GATC | 1 cut(s) | 450 |
| MboI | GATC | 1 cut(s) | 448 |
| MboII | GAAGA | 4 cut(s) | 16, 165, 324, 384 |
| MflI | RGATCY | 1 cut(s) | 448 |
| MluCI | AATT | 3 cut(s) | 293, 454, 488 |
| MmeI | TCCRAC | 1 cut(s) | 204 |
| MseI | TTAA | 1 cut(s) | 114 |
| MslI | CAYNNNNRTG | 1 cut(s) | 257 |
| MspI | CCGG | 1 cut(s) | 110 |
| MspR9I | CCNGG | 3 cut(s) | 110, 354, 446 |
| MvaI | CCWGG | 2 cut(s) | 354, 446 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 61, 139, 148, 284 |
| NciI | CCSGG | 1 cut(s) | 110 |
| NdeII | GATC | 1 cut(s) | 448 |
| NlaIII | CATG | 2 cut(s) | 43, 146 |
| NlaIV | GGNNCC | 4 cut(s) | 264, 387, 450, 462 |
| NspI | RCATGY | 1 cut(s) | 146 |
| PfeI | GAWTC | 1 cut(s) | 104 |
| PkrI | GCNGC | 2 cut(s) | 325, 328 |
| Psp6I | CCWGG | 2 cut(s) | 352, 444 |
| PspFI | CCCAGC | 1 cut(s) | 60 |
| PspGI | CCWGG | 2 cut(s) | 352, 444 |
| PspN4I | GGNNCC | 4 cut(s) | 264, 387, 450, 462 |
| PsuI | RGATCY | 1 cut(s) | 448 |
| RsaI | GTAC | 1 cut(s) | 400 |
| RsaNI | GTAC | 1 cut(s) | 399 |
| RseI | CAYNNNNRTG | 1 cut(s) | 257 |
| SaqAI | TTAA | 1 cut(s) | 114 |
| SatI | GCNGC | 2 cut(s) | 324, 327 |
| Sau3AI | GATC | 1 cut(s) | 448 |
| ScrFI | CCNGG | 3 cut(s) | 110, 354, 446 |
| SetI | ASST | 9 cut(s) | 52, 210, 232, 268, 368, 391, 474, 525, 547 |
| SfaNI | GCATC | 1 cut(s) | 265 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 257 |
| Sse9I | AATT | 3 cut(s) | 293, 454, 488 |
| SsiI | CCGC | 2 cut(s) | 53, 326 |
| StyD4I | CCNGG | 3 cut(s) | 108, 352, 444 |
| TaaI | ACNGT | 2 cut(s) | 163, 407 |
| TaiI | ACGT | 1 cut(s) | 210 |
| TasI | AATT | 3 cut(s) | 293, 454, 488 |
| TauI | GCSGC | 1 cut(s) | 329 |
| TfiI | GAWTC | 1 cut(s) | 104 |
| Tru1I | TTAA | 1 cut(s) | 114 |
| Tru9I | TTAA | 1 cut(s) | 114 |
| TscAI | CASTG | 1 cut(s) | 166 |
| TseI | GCWGC | 1 cut(s) | 323 |
| TspDTI | ATGAA | 2 cut(s) | 17, 402 |
| TspGWI | ACGGA | 1 cut(s) | 398 |
| TspRI | CASTG | 1 cut(s) | 166 |
| XapI | RAATTY | 2 cut(s) | 454, 488 |
| XceI | RCATGY | 1 cut(s) | 146 |