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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 3 cut(s) | 210, 362, 610 |
| AccB1I | GGYRCC | 1 cut(s) | 172 |
| AccI | GTMKAC | 1 cut(s) | 376 |
| AccII | CGCG | 1 cut(s) | 268 |
| AciI | CCGC | 3 cut(s) | 5, 53, 416 |
| AclWI | GGATC | 1 cut(s) | 152 |
| AcoI | YGGCCR | 2 cut(s) | 6, 258 |
| AcsI | RAATTY | 1 cut(s) | 575 |
| AcyI | GRCGYC | 1 cut(s) | 173 |
| AfaI | GTAC | 1 cut(s) | 414 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 367 |
| AgeI | ACCGGT | 1 cut(s) | 532 |
| AgsI | TTSAA | 5 cut(s) | 288, 332, 542, 616, 626 |
| AluBI | AGCT | 2 cut(s) | 458, 686 |
| AluI | AGCT | 2 cut(s) | 458, 686 |
| Alw21I | GWGCWC | 1 cut(s) | 192 |
| Alw26I | GTCTC | 1 cut(s) | 334 |
| AlwI | GGATC | 1 cut(s) | 152 |
| AoxI | GGCC | 3 cut(s) | 6, 151, 258 |
| ApeKI | GCWGC | 3 cut(s) | 12, 41, 216 |
| ApoI | RAATTY | 1 cut(s) | 575 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 281, 313 |
| AsiGI | ACCGGT | 1 cut(s) | 532 |
| AspLEI | GCGC | 1 cut(s) | 175 |
| AspS9I | GGNCC | 2 cut(s) | 586, 689 |
| AsuC2I | CCSGG | 1 cut(s) | 584 |
| AsuHPI | GGTGA | 5 cut(s) | 87, 349, 427, 480, 584 |
| AvaII | GGWCC | 2 cut(s) | 586, 689 |
| BanI | GGYRCC | 1 cut(s) | 172 |
| BanII | GRGCYC | 1 cut(s) | 670 |
| BbsI | GAAGAC | 1 cut(s) | 207 |
| Bbv12I | GWGCWC | 1 cut(s) | 192 |
| BbvI | GCAGC | 3 cut(s) | 24, 53, 228 |
| BccI | CCATC | 4 cut(s) | 100, 358, 400, 657 |
| BclI | TGATCA | 1 cut(s) | 85 |
| BcnI | CCSGG | 1 cut(s) | 584 |
| BcoDI | GTCTC | 1 cut(s) | 334 |
| BfaI | CTAG | 6 cut(s) | 50, 402, 429, 462, 479, 660 |
| BfoI | RGCGCY | 1 cut(s) | 176 |
| BfuAI | ACCTGC | 3 cut(s) | 210, 362, 610 |
| BisI | GCNGC | 5 cut(s) | 6, 13, 42, 54, 217 |
| BlsI | GCNGC | 5 cut(s) | 7, 14, 43, 55, 218 |
| Bme1390I | CCNGG | 1 cut(s) | 584 |
| Bme18I | GGWCC | 2 cut(s) | 586, 689 |
| BmgT120I | GGNCC | 2 cut(s) | 586, 689 |
| BmiI | GGNNCC | 1 cut(s) | 174 |
| BmrFI | CCNGG | 1 cut(s) | 584 |
| BpiI | GAAGAC | 1 cut(s) | 207 |
| BpmI | CTGGAG | 1 cut(s) | 99 |
| BpuMI | CCSGG | 1 cut(s) | 584 |
| BsaBI | GATNNNNATC | 1 cut(s) | 522 |
| BsaHI | GRCGYC | 1 cut(s) | 173 |
| BsaJI | CCNNGG | 2 cut(s) | 161, 582 |
| BsaWI | WCCGGW | 1 cut(s) | 532 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 367 |
| Bse118I | RCCGGY | 2 cut(s) | 8, 532 |
| Bse3DI | GCAATG | 1 cut(s) | 78 |
| Bse8I | GATNNNNATC | 1 cut(s) | 522 |
| BseDI | CCNNGG | 2 cut(s) | 161, 582 |
| BseGI | GGATG | 1 cut(s) | 387 |
| BseJI | GATNNNNATC | 1 cut(s) | 522 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 367 |
| BseMI | GCAATG | 1 cut(s) | 78 |
| BseMII | CTCAG | 1 cut(s) | 453 |
| BseRI | GAGGAG | 1 cut(s) | 581 |
| BseX3I | CGGCCG | 1 cut(s) | 6 |
| BseXI | GCAGC | 3 cut(s) | 24, 53, 228 |
| Bsh1236I | CGCG | 1 cut(s) | 268 |
| Bsh1285I | CGRYCG | 1 cut(s) | 9 |
| BshFI | GGCC | 3 cut(s) | 8, 153, 260 |
| BshNI | GGYRCC | 1 cut(s) | 172 |
| BshTI | ACCGGT | 1 cut(s) | 532 |
| BsiEI | CGRYCG | 1 cut(s) | 9 |
| BsiHKAI | GWGCWC | 1 cut(s) | 192 |
| BsiSI | CCGG | 3 cut(s) | 9, 533, 584 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 367 |
| BsmAI | GTCTC | 1 cut(s) | 334 |
| BsnI | GGCC | 3 cut(s) | 8, 153, 260 |
| Bsp1286I | GDGCHC | 2 cut(s) | 192, 670 |
| Bsp143I | GATC | 4 cut(s) | 85, 157, 233, 321 |
| BspACI | CCGC | 3 cut(s) | 5, 53, 416 |
| BspANI | GGCC | 3 cut(s) | 8, 153, 260 |
| BspCNI | CTCAG | 1 cut(s) | 452 |
| BspFNI | CGCG | 1 cut(s) | 268 |
| BspLI | GGNNCC | 1 cut(s) | 174 |
| BspMI | ACCTGC | 3 cut(s) | 210, 362, 610 |
| BspPI | GGATC | 1 cut(s) | 152 |
| BspT107I | GGYRCC | 1 cut(s) | 172 |
| BsrDI | GCAATG | 1 cut(s) | 78 |
| BsrFI | RCCGGY | 2 cut(s) | 8, 532 |
| BssAI | RCCGGY | 2 cut(s) | 8, 532 |
| BssECI | CCNNGG | 2 cut(s) | 161, 582 |
| BssMI | GATC | 4 cut(s) | 85, 157, 233, 321 |
| BssNI | GRCGYC | 1 cut(s) | 173 |
| BssT1I | CCWWGG | 1 cut(s) | 161 |
| Bst4CI | ACNGT | 5 cut(s) | 138, 169, 208, 241, 410 |
| Bst6I | CTCTTC | 2 cut(s) | 72, 178 |
| BstACI | GRCGYC | 1 cut(s) | 173 |
| BstC8I | GCNNGC | 1 cut(s) | 10 |
| BstDEI | CTNAG | 1 cut(s) | 439 |
| BstF5I | GGATG | 1 cut(s) | 387 |
| BstFNI | CGCG | 1 cut(s) | 268 |
| BstH2I | RGCGCY | 1 cut(s) | 176 |
| BstHHI | GCGC | 1 cut(s) | 175 |
| BstKTI | GATC | 4 cut(s) | 88, 160, 236, 324 |
| BstMAI | GTCTC | 1 cut(s) | 334 |
| BstMBI | GATC | 4 cut(s) | 85, 157, 233, 321 |
| BstMCI | CGRYCG | 1 cut(s) | 9 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 50 |
| BstSCI | CCNGG | 1 cut(s) | 582 |
| BstUI | CGCG | 1 cut(s) | 268 |
| BstV1I | GCAGC | 3 cut(s) | 24, 53, 228 |
| BstV2I | GAAGAC | 1 cut(s) | 207 |
| BstZI | CGGCCG | 1 cut(s) | 6 |
| BsuRI | GGCC | 3 cut(s) | 8, 153, 260 |
| BtsCI | GGATG | 1 cut(s) | 387 |
| BtsIMutI | CAGTG | 3 cut(s) | 204, 246, 415 |
| BveI | ACCTGC | 3 cut(s) | 210, 362, 610 |
| Cac8I | GCNNGC | 1 cut(s) | 10 |
| CfoI | GCGC | 1 cut(s) | 175 |
| Cfr10I | RCCGGY | 2 cut(s) | 8, 532 |
| Cfr13I | GGNCC | 2 cut(s) | 586, 689 |
| Csp6I | GTAC | 1 cut(s) | 413 |
| CspAI | ACCGGT | 1 cut(s) | 532 |
| CviAII | CATG | 2 cut(s) | 514, 527 |
| CviQI | GTAC | 1 cut(s) | 413 |
| DdeI | CTNAG | 1 cut(s) | 439 |
| DinI | GGCGCC | 1 cut(s) | 174 |
| DpnI | GATC | 4 cut(s) | 87, 159, 235, 323 |
| DpnII | GATC | 4 cut(s) | 85, 157, 233, 321 |
| EaeI | YGGCCR | 2 cut(s) | 6, 258 |
| EagI | CGGCCG | 1 cut(s) | 6 |
| Eam1104I | CTCTTC | 2 cut(s) | 72, 178 |
| EarI | CTCTTC | 2 cut(s) | 72, 178 |
| EclXI | CGGCCG | 1 cut(s) | 6 |
| Eco130I | CCWWGG | 1 cut(s) | 161 |
| Eco24I | GRGCYC | 1 cut(s) | 670 |
| Eco47I | GGWCC | 2 cut(s) | 586, 689 |
| Eco52I | CGGCCG | 1 cut(s) | 6 |
| EcoT14I | CCWWGG | 1 cut(s) | 161 |
| EcoT38I | GRGCYC | 1 cut(s) | 670 |
| EgeI | GGCGCC | 1 cut(s) | 174 |
| EheI | GGCGCC | 1 cut(s) | 174 |
| ErhI | CCWWGG | 1 cut(s) | 161 |
| FaeI | CATG | 2 cut(s) | 517, 530 |
| FaiI | YATR | 6 cut(s) | 39, 195, 303, 515, 528, 703 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 596, 628 |
| FatI | CATG | 2 cut(s) | 513, 526 |
| FbaI | TGATCA | 1 cut(s) | 85 |
| FblI | GTMKAC | 1 cut(s) | 376 |
| Fnu4HI | GCNGC | 5 cut(s) | 6, 13, 42, 54, 217 |
| FokI | GGATG | 1 cut(s) | 374 |
| FriOI | GRGCYC | 1 cut(s) | 670 |
| Fsp4HI | GCNGC | 5 cut(s) | 6, 13, 42, 54, 217 |
| FspBI | CTAG | 6 cut(s) | 50, 402, 429, 462, 479, 660 |
| GlaI | GCGC | 1 cut(s) | 174 |
| GluI | GCNGC | 5 cut(s) | 6, 13, 42, 54, 217 |
| GsuI | CTGGAG | 1 cut(s) | 99 |
| HaeII | RGCGCY | 1 cut(s) | 176 |
| HaeIII | GGCC | 3 cut(s) | 8, 153, 260 |
| HapII | CCGG | 3 cut(s) | 9, 533, 584 |
| HhaI | GCGC | 1 cut(s) | 175 |
| Hin1I | GRCGYC | 1 cut(s) | 173 |
| Hin1II | CATG | 2 cut(s) | 517, 530 |
| Hin6I | GCGC | 1 cut(s) | 173 |
| HinP1I | GCGC | 1 cut(s) | 173 |
| HincII | GTYRAC | 1 cut(s) | 474 |
| HindII | GTYRAC | 1 cut(s) | 474 |
| HindIII | AAGCTT | 1 cut(s) | 456 |
| HinfI | GANTC | 7 cut(s) | 59, 112, 211, 280, 342, 398, 432 |
| HpaII | CCGG | 3 cut(s) | 9, 533, 584 |
| HphI | GGTGA | 5 cut(s) | 87, 349, 427, 480, 584 |
| Hpy166II | GTNNAC | 4 cut(s) | 377, 413, 474, 653 |
| Hpy188I | TCNGA | 3 cut(s) | 321, 358, 397 |
| Hpy188III | TCNNGA | 4 cut(s) | 103, 116, 563, 613 |
| Hpy8I | GTNNAC | 4 cut(s) | 377, 413, 474, 653 |
| HpyAV | CCTTC | 4 cut(s) | 270, 363, 510, 601 |
| HpyCH4III | ACNGT | 5 cut(s) | 138, 169, 208, 241, 410 |
| HpyCH4IV | ACGT | 1 cut(s) | 470 |
| HpyCH4V | TGCA | 3 cut(s) | 41, 305, 530 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 50 |
| HpyF3I | CTNAG | 1 cut(s) | 439 |
| HpySE526I | ACGT | 1 cut(s) | 470 |
| Hsp92I | GRCGYC | 1 cut(s) | 173 |
| Hsp92II | CATG | 2 cut(s) | 517, 530 |
| HspAI | GCGC | 1 cut(s) | 173 |
| KasI | GGCGCC | 1 cut(s) | 172 |
| KroI | GCCGGC | 1 cut(s) | 8 |
| KroNI | GCCGGC | 1 cut(s) | 10 |
| Ksp22I | TGATCA | 1 cut(s) | 85 |
| Kzo9I | GATC | 4 cut(s) | 85, 157, 233, 321 |
| LmnI | GCTCC | 3 cut(s) | 195, 229, 683 |
| Lsp1109I | GCAGC | 3 cut(s) | 24, 53, 228 |
| MaeI | CTAG | 6 cut(s) | 50, 402, 429, 462, 479, 660 |
| MaeII | ACGT | 1 cut(s) | 470 |
| MaeIII | GTNAC | 2 cut(s) | 404, 433 |
| MalI | GATC | 4 cut(s) | 87, 159, 235, 323 |
| MboI | GATC | 4 cut(s) | 85, 157, 233, 321 |
| MboII | GAAGA | 5 cut(s) | 59, 118, 195, 212, 256 |
| MhlI | GDGCHC | 2 cut(s) | 192, 670 |
| MluCI | AATT | 2 cut(s) | 327, 575 |
| Mly113I | GGCGCC | 1 cut(s) | 173 |
| MlyI | GAGTC | 5 cut(s) | 53, 106, 220, 336, 441 |
| MmeI | TCCRAC | 2 cut(s) | 151, 207 |
| MnlI | CCTC | 9 cut(s) | 43, 75, 327, 361, 448, 496, 559, 562, 599 |
| MroNI | GCCGGC | 1 cut(s) | 8 |
| MslI | CAYNNNNRTG | 2 cut(s) | 107, 677 |
| MspI | CCGG | 3 cut(s) | 9, 533, 584 |
| MspR9I | CCNGG | 1 cut(s) | 584 |
| MvnI | CGCG | 1 cut(s) | 268 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 50 |
| NaeI | GCCGGC | 1 cut(s) | 10 |
| NarI | GGCGCC | 1 cut(s) | 173 |
| NciI | CCSGG | 1 cut(s) | 584 |
| NdeII | GATC | 4 cut(s) | 85, 157, 233, 321 |
| NgoMIV | GCCGGC | 1 cut(s) | 8 |
| NlaIII | CATG | 2 cut(s) | 517, 530 |
| NlaIV | GGNNCC | 1 cut(s) | 174 |
| NmuCI | GTSAC | 1 cut(s) | 433 |
| PdiI | GCCGGC | 1 cut(s) | 10 |
| PfeI | GAWTC | 2 cut(s) | 280, 398 |
| PinAI | ACCGGT | 1 cut(s) | 532 |
| PkrI | GCNGC | 5 cut(s) | 7, 14, 43, 55, 218 |
| PleI | GAGTC | 5 cut(s) | 53, 106, 219, 336, 440 |
| PluTI | GGCGCC | 1 cut(s) | 176 |
| PpsI | GAGTC | 5 cut(s) | 53, 106, 219, 336, 440 |
| PspN4I | GGNNCC | 1 cut(s) | 174 |
| PspPI | GGNCC | 2 cut(s) | 586, 689 |
| RsaI | GTAC | 1 cut(s) | 414 |
| RsaNI | GTAC | 1 cut(s) | 413 |
| RseI | CAYNNNNRTG | 2 cut(s) | 107, 677 |
| SatI | GCNGC | 5 cut(s) | 6, 13, 42, 54, 217 |
| Sau3AI | GATC | 4 cut(s) | 85, 157, 233, 321 |
| Sau96I | GGNCC | 2 cut(s) | 586, 689 |
| SchI | GAGTC | 5 cut(s) | 53, 106, 220, 336, 441 |
| ScrFI | CCNGG | 1 cut(s) | 584 |
| SduI | GDGCHC | 2 cut(s) | 192, 670 |
| SfoI | GGCGCC | 1 cut(s) | 174 |
| SinI | GGWCC | 2 cut(s) | 586, 689 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 107, 677 |
| Sse9I | AATT | 2 cut(s) | 327, 575 |
| SsiI | CCGC | 3 cut(s) | 5, 53, 416 |
| SspDI | GGCGCC | 1 cut(s) | 172 |
| SspMI | CTAG | 6 cut(s) | 50, 402, 429, 462, 479, 660 |
| StyD4I | CCNGG | 1 cut(s) | 582 |
| StyI | CCWWGG | 1 cut(s) | 161 |
| TaaI | ACNGT | 5 cut(s) | 138, 169, 208, 241, 410 |
| TaiI | ACGT | 1 cut(s) | 473 |
| TasI | AATT | 2 cut(s) | 327, 575 |
| TauI | GCSGC | 2 cut(s) | 8, 56 |
| TfiI | GAWTC | 2 cut(s) | 280, 398 |
| TscAI | CASTG | 3 cut(s) | 211, 246, 415 |
| TseFI | GTSAC | 1 cut(s) | 433 |
| TseI | GCWGC | 3 cut(s) | 12, 41, 216 |
| Tsp45I | GTSAC | 1 cut(s) | 433 |
| TspDTI | ATGAA | 1 cut(s) | 213 |
| TspRI | CASTG | 3 cut(s) | 211, 246, 415 |
| VpaK11BI | GGWCC | 2 cut(s) | 586, 689 |
| XapI | RAATTY | 1 cut(s) | 575 |
| XmiI | GTMKAC | 1 cut(s) | 376 |
| XspI | CTAG | 6 cut(s) | 50, 402, 429, 462, 479, 660 |