Rroxscaffold_5G00343570

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000044
Physical Location & Seq
Reverse (-)
13069280 .. 13069855
576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00343570.1

Sequence Viewer

Length: 540 bp
ATGGAGATTTCCCGTGGGGTAGGGATACCATTGCACATCGATAAAGCTATGAAAGAGCGTCAATTTGGTTATTATGCCCGCAAATTGGTTGATATTGAACTAAGTCAAGATCTTCCAACTTCTCTTATGGTGGAAAAAGGTTGCCATGCTTTCTCTGTAGGTATTTCTTATGAGAACTTGCCACGTCAATTTAAGGAACAAGAGAAACCAAGAGGTAAAAAAGTTCGTCAAGAATATAGGATCAAGGCTACTTCGAATATTGTCTCACATGTTGAACAACCAGAAACTGAGCTTGCTTCTCCAGAGAATGTCCACATTGAAGATACGATTGAGAATGAGGTATCCAATGGGCTATTTAATCAATTCGTTTCTCAAAACACTGATAATAGGCTTGCTTTTGTTGATGCATCTATTGATGAGATTGGCCCTATTGATTCAAGTGTGACTCTGTTGGCTAGTCCAAGTGAAACACATGTGAAGAGCATAGCTCCAATAGAATCTGCTGGTAATGTCAATGTTTCGACTAGTAACAGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

179

Amino Acids

19.9

Weight (kDa)

5.14

Isoelectric Point (pI)

46.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000044)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07760 AT5G28823
fragaria_vesca FvH4_1g13572 FvH4_2g03281 FvH4_2g04691 FvH4_2g08332 FvH4_2g08333 FvH4_2g15313 FvH4_2g26101 FvH4_2g29541 FvH4_3g06911 FvH4_3g34351 FvH4_3g43733 FvH4_4g02432 FvH4_4g05601 FvH4_4g08213 FvH4_4g09961 FvH4_4g10131 FvH4_4g20001 FvH4_4g20002 FvH4_5g01051 FvH4_5g01401 FvH4_5g27943 FvH4_6g09220 FvH4_6g17383 FvH4_6g35491 FvH4_6g46421 FvH4_7g04151 FvH4_7g13962 FvH4_7g18611 FvH4_7g19491 FvH4_7g19511 FvH4_7g26562
malus_domestica MD06G1221600.v1.1
pyrus_communis pycom10g21150
rosa_chinensis RchiOBHm_Chr1g0337571 RchiOBHm_Chr2g0168771 RchiOBHm_Chr3g0453631 RchiOBHm_Chr6g0278581
rosa_laevigata RLG00000001899 RLG00000001925 RLG00000002026 RLG00000003410 RLG00000003767 RLG00000004304 RLG00000004473 RLG00000004677 RLG00000006856 RLG00000007994 RLG00000009888 RLG00000011627 RLG00000012174 RLG00000012217 RLG00000013118 RLG00000013736 RLG00000014194 RLG00000014251 RLG00000015011 RLG00000015057 RLG00000015235 RLG00000017416 RLG00000018052 RLG00000018537 RLG00000019968 RLG00000020096 RLG00000020263 RLG00000022606 RLG00000023119 RLG00000028111 RLG00000029686 RLG00000030126 RLG00000031124 RLG00000031236 RLG00000032766 RLG00000033171 RLG00000033548 RLG00000033987 RLG00000034062 RLG00000035115 RLG00000035863
rosa_multiflora Rmu_co8036712.1_g000001 Rmu_co8080248.1_g000001 Rmu_co8208334.1_g000001 Rmu_co8253451.1_g000001 Rmu_co8393241.1_g000001 Rmu_co8522225.1_g000005 Rmu_sc0000060.1_g000030 Rmu_sc0000060.1_g000031 Rmu_sc0000060.1_g000032 Rmu_sc0000090.1_g000008 Rmu_sc0000149.1_g000051 Rmu_sc0000149.1_g000058 Rmu_sc0000309.1_g000050 Rmu_sc0000370.1_g000022 Rmu_sc0000370.1_g000023 Rmu_sc0000370.1_g000024 Rmu_sc0000418.1_g000018 Rmu_sc0000427.1_g000014 Rmu_sc0000427.1_g000015 Rmu_sc0000434.1_g000008 Rmu_sc0000487.1_g000038 Rmu_sc0000487.1_g000039 Rmu_sc0000569.1_g000029 Rmu_sc0000580.1_g000097 Rmu_sc0000595.1_g000068 Rmu_sc0000607.1_g000027 Rmu_sc0000738.1_g000004 Rmu_sc0000758.1_g000001 Rmu_sc0000758.1_g000002 Rmu_sc0000870.1_g000019 Rmu_sc0000924.1_g000040 Rmu_sc0000924.1_g000041 Rmu_sc0000999.1_g000037 Rmu_sc0001001.1_g000001 Rmu_sc0001010.1_g000080 Rmu_sc0001075.1_g000041 Rmu_sc0001097.1_g000016 Rmu_sc0001173.1_g000020 Rmu_sc0001258.1_g000010 Rmu_sc0001425.1_g000031 Rmu_sc0001493.1_g000020 Rmu_sc0001493.1_g000021 Rmu_sc0001644.1_g000024 Rmu_sc0001648.1_g000039 Rmu_sc0001662.1_g000002 Rmu_sc0001849.1_g000046 Rmu_sc0001851.1_g000038 Rmu_sc0001861.1_g000006 Rmu_sc0001899.1_g000008 Rmu_sc0002231.1_g000023 Rmu_sc0002393.1_g000012 Rmu_sc0002515.1_g000010 Rmu_sc0002551.1_g000013 Rmu_sc0002680.1_g000029 Rmu_sc0002700.1_g000030 Rmu_sc0002700.1_g000031 Rmu_sc0002709.1_g000035 Rmu_sc0002779.1_g000017 Rmu_sc0003267.1_g000040 Rmu_sc0003306.1_g000009 Rmu_sc0003338.1_g000014 Rmu_sc0003522.1_g000038 Rmu_sc0003522.1_g000039 Rmu_sc0003653.1_g000031 Rmu_sc0003901.1_g000003 Rmu_sc0003920.1_g000009 Rmu_sc0004014.1_g000009 Rmu_sc0004016.1_g000013 Rmu_sc0004031.1_g000002 Rmu_sc0004106.1_g000001 Rmu_sc0004432.1_g000004 Rmu_sc0004481.1_g000020 Rmu_sc0004874.1_g000005 Rmu_sc0004928.1_g000005 Rmu_sc0005065.1_g000053 Rmu_sc0005091.1_g000005 Rmu_sc0005217.1_g000015 Rmu_sc0005242.1_g000002 Rmu_sc0005300.1_g000011 Rmu_sc0005400.1_g000004 Rmu_sc0005486.1_g000007 Rmu_sc0005527.1_g000015 Rmu_sc0006059.1_g000021 Rmu_sc0006087.1_g000004 Rmu_sc0006184.1_g000006 Rmu_sc0006184.1_g000007 Rmu_sc0006578.1_g000006 Rmu_sc0006730.1_g000010 Rmu_sc0006736.1_g000030 Rmu_sc0006736.1_g000033 Rmu_sc0007333.1_g000018 Rmu_sc0007856.1_g000010 Rmu_sc0008231.1_g000003 Rmu_sc0009862.1_g000012 Rmu_sc0010547.1_g000001 Rmu_sc0010547.1_g000003 Rmu_sc0010632.1_g000012 Rmu_sc0010747.1_g000008 Rmu_sc0011075.1_g000009 Rmu_sc0011565.1_g000004 Rmu_sc0011641.1_g000003 Rmu_sc0013102.1_g000013 Rmu_sc0013160.1_g000006 Rmu_sc0014846.1_g000004 Rmu_sc0017037.1_g000003 Rmu_sc0018203.1_g000001 Rmu_sc0018204.1_g000001 Rmu_sc0018348.1_g000001 Rmu_sc0019354.1_g000002 Rmu_sc0021630.1_g000002 Rmu_sc0022987.1_g000002 Rmu_sc0024469.1_g000005 Rmu_sc0033519.1_g000001 Rmu_sc0033519.1_g000002 Rmu_sc0033519.1_g000003 Rmu_sc0042775.1_g000001 Rmu_ssc0000110.1_g000003 Rmu_ssc0000110.1_g000004 Rmu_ssc0000126.1_g000068 Rmu_ssc0000200.1_g000007 Rmu_ssc0000295.1_g000003 Rmu_ssc0000295.1_g000004 Rmu_ssc0000299.1_g000010 Rmu_ssc0000308.1_g000024 Rmu_ssc0000339.1_g000006 Rmu_ssc0000385.1_g000012 Rmu_ssc0000409.1_g000004 Rmu_ssc0000421.1_g000004
rosa_roxburghii Rroxscaffold_156G00440360 Rroxscaffold_166G00440800 Rroxscaffold_1G00039040 Rroxscaffold_1G00039050 Rroxscaffold_1G00073950 Rroxscaffold_2G00091710 Rroxscaffold_2G00120050 Rroxscaffold_2G00122590 Rroxscaffold_3G00219700 Rroxscaffold_3G00264140 Rroxscaffold_4G00290600 Rroxscaffold_4G00323610 Rroxscaffold_4G00328460 Rroxscaffold_5G00343440 Rroxscaffold_5G00343570 Rroxscaffold_5G00378540 Rroxscaffold_5G00385090 Rroxscaffold_7G00169130 Rroxscaffold_7G00216420
rosa_rugosa Rorug01G0065800 Rorug01G0073500 Rorug01G0091700 Rorug01G0096500 Rorug01G0204700.1 Rorug01G0249100 Rorug01G0333800 Rorug01G0333900 Rorug01G0339500 Rorug01G0431300 Rorug02G0085400 Rorug02G0117500 Rorug02G0130900 Rorug02G0178800 Rorug02G0226700 Rorug02G0336300 Rorug02G0338700 Rorug02G0351400 Rorug02G0459900 Rorug03G0187000 Rorug03G0223700 Rorug03G0291300 Rorug03G0291300 Rorug03G0311100 Rorug03G0316900 Rorug03G0346000 Rorug04G0014500 Rorug04G0014600 Rorug04G0124100 Rorug04G0136500 Rorug04G0302000 Rorug04G0338100 Rorug04G0338200 Rorug04G0413100 Rorug05G0182200 Rorug05G0226500 Rorug05G0273300 Rorug05G0292200 Rorug05G0292200 Rorug05G0392500 Rorug05G0394500 Rorug05G0394600 Rorug05G0505600.1 Rorug06G0351400 Rorug06G0393400 Rorug06G0393600 Rorug06G0470000 Rorug07G0063100 Rorug07G0086800 Rorug07G0109200 Rorug07G0236100
rosa_samantha Rh1AG010800 Rh1AG011100 Rh1AG064900 Rh1AG088000 Rh1AG207100 Rh1AG262000 Rh1AG300800 Rh1BG043000 Rh1BG144600 Rh1BG180700 Rh1BG180800 Rh1BG328800 Rh1BG399400 Rh1CG041400 Rh1CG047300 Rh1CG379700 Rh1DG036500 Rh1DG083000 Rh1DG210700 Rh1DG210800 Rh1DG231100 Rh2AG007900 Rh2AG055500 Rh2AG339100 Rh2AG368100 Rh2BG243300 Rh2BG258900 Rh2BG292000 Rh2BG333500 Rh2BG387300 Rh2BG612800 Rh2BG619100 Rh2CG026500 Rh2CG163600 Rh2CG535700 Rh2DG186400 Rh2DG235000 Rh2DG314500 Rh2DG388500 Rh2DG391400 Rh2DG496900 Rh2DG526700 Rh2DG570700 Rh3AG330700 Rh3BG266900 Rh3CG236000 Rh3CG340400 Rh3DG090000 Rh3DG278400 Rh3DG297600 Rh3DG362600 Rh4AG001300 Rh4AG023300 Rh4AG097100 Rh4AG427000 Rh4BG029400 Rh4BG032400 Rh4BG086000 Rh4BG249200 Rh4CG001900 Rh4CG040600 Rh4CG093000 Rh4CG106300 Rh4CG113200 Rh4CG113900 Rh4DG002300 Rh4DG144400 Rh4DG234200 Rh5AG043700 Rh5AG084900 Rh5AG161500 Rh5AG409000 Rh5AG457200 Rh5AG457900 Rh5AG473700 Rh5AG520600 Rh5BG042100 Rh5BG124100 Rh5BG323500 Rh5BG417200 Rh5BG443700 Rh5BG451500 Rh5BG464900 Rh5BG470400 Rh5BG522500 Rh5CG068800 Rh5CG178300 Rh5CG231000 Rh5CG258600 Rh5CG394500 Rh5CG473700 Rh5DG164700 Rh5DG235400 Rh5DG261300 Rh5DG304900 Rh5DG334500 Rh5DG424300 Rh5DG458400 Rh5DG478600 Rh5DG552300 Rh5DG552700 Rh6AG037000 Rh6AG042100 Rh6AG255500 Rh6AG283400 Rh6AG291800 Rh6BG049600 Rh6BG080700 Rh6BG114600 Rh6BG128900 Rh6BG352500 Rh6CG052400 Rh6CG112900 Rh6CG113000 Rh6CG131300 Rh6CG157700 Rh6CG243200 Rh6CG254100 Rh6CG275700 Rh6CG299700 Rh6CG309100 Rh6CG317600 Rh6CG342600 Rh6CG471900 Rh6DG038200 Rh6DG102300 Rh6DG114400 Rh6DG225900 Rh6DG292900 Rh6DG320700 Rh6DG512800 Rh7AG217700 Rh7AG313900 Rh7AG446000 Rh7AG472600 Rh7BG223100 Rh7BG349900 Rh7BG352000 Rh7CG160200 Rh7CG233900 Rh7CG242700 Rh7CG273900 Rh7CG306400 Rh7CG322200 Rh7DG053800 Rh7DG077800 Rh7DG227700 Rh7DG404800
rosa_wichuraiana Rw0G003990 Rw2G022110 Rw2G024890 Rw6G005700 Rw7G008770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 79
AclWI GGATC 1 cut(s) 248
AfiI CCNNNNNNNGG 1 cut(s) 85
AflIII ACRYGT 2 cut(s) 268, 472
AgsI TTSAA 4 cut(s) 98, 275, 320, 438
AhlI ACTAGT 1 cut(s) 524
AjiI CACGTC 1 cut(s) 185
AluBI AGCT 3 cut(s) 47, 292, 488
AluI AGCT 3 cut(s) 47, 292, 488
Alw26I GTCTC 1 cut(s) 268
AlwI GGATC 1 cut(s) 248
AlwNI CAGNNNCTG 1 cut(s) 287
AoxI GGCC 1 cut(s) 424
AspS9I GGNCC 1 cut(s) 425
AsuII TTCGAA 1 cut(s) 254
BciVI GTATCC 2 cut(s) 18, 352
BcoDI GTCTC 1 cut(s) 268
BcuI ACTAGT 1 cut(s) 524
BfaI CTAG 2 cut(s) 456, 525
BfmI CTRYAG 1 cut(s) 156
BfuI GTATCC 2 cut(s) 18, 352
BglII AGATCT 1 cut(s) 109
BmgBI CACGTC 1 cut(s) 185
BmgT120I GGNCC 1 cut(s) 425
BmsI GCATC 2 cut(s) 394, 416
BplI GAGNNNNNCTC 2 cut(s) 472, 504
BpmI CTGGAG 1 cut(s) 285
Bpu14I TTCGAA 1 cut(s) 254
Bsa29I ATCGAT 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 13
Bsc4I CCNNNNNNNGG 1 cut(s) 85
Bse3DI GCAATG 1 cut(s) 29
BseCI ATCGAT 1 cut(s) 39
BseDI CCNNGG 1 cut(s) 13
BseLI CCNNNNNNNGG 1 cut(s) 85
BseMI GCAATG 1 cut(s) 29
BseMII CTCAG 1 cut(s) 279
BshFI GGCC 1 cut(s) 426
BshVI ATCGAT 1 cut(s) 39
BslI CCNNNNNNNGG 1 cut(s) 85
BsmAI GTCTC 1 cut(s) 268
BsnI GGCC 1 cut(s) 426
Bsp119I TTCGAA 1 cut(s) 254
Bsp143I GATC 2 cut(s) 109, 240
BspACI CCGC 1 cut(s) 79
BspANI GGCC 1 cut(s) 426
BspCNI CTCAG 1 cut(s) 280
BspDI ATCGAT 1 cut(s) 39
BspPI GGATC 1 cut(s) 248
BspQI GCTCTTC 1 cut(s) 473
BspT104I TTCGAA 1 cut(s) 254
BsrDI GCAATG 1 cut(s) 29
BssECI CCNNGG 1 cut(s) 13
BssMI GATC 2 cut(s) 109, 240
Bst4CI ACNGT 1 cut(s) 533
Bst6I CTCTTC 1 cut(s) 473
BstBI TTCGAA 1 cut(s) 254
BstC8I GCNNGC 3 cut(s) 79, 294, 393
BstDEI CTNAG 2 cut(s) 101, 288
BstDSI CCRYGG 1 cut(s) 13
BstKTI GATC 2 cut(s) 112, 243
BstMAI GTCTC 1 cut(s) 268
BstMBI GATC 2 cut(s) 109, 240
BstNSI RCATGY 2 cut(s) 272, 476
BstSFI CTRYAG 1 cut(s) 156
BstX2I RGATCY 1 cut(s) 109
BstYI RGATCY 1 cut(s) 109
Bsu15I ATCGAT 1 cut(s) 39
BsuI GTATCC 2 cut(s) 18, 352
BsuRI GGCC 1 cut(s) 426
BsuTUI ATCGAT 1 cut(s) 39
BtgI CCRYGG 1 cut(s) 13
BtrI CACGTC 1 cut(s) 185
BtsIMutI CAGTG 1 cut(s) 378
Cac8I GCNNGC 3 cut(s) 79, 294, 393
CaiI CAGNNNCTG 1 cut(s) 287
Cfr13I GGNCC 1 cut(s) 425
ClaI ATCGAT 1 cut(s) 39
CseI GACGC 1 cut(s) 47
CviAII CATG 3 cut(s) 146, 269, 473
CviJI RGCY 8 cut(s) 47, 248, 292, 352, 391, 426, 455, 488
CviKI_1 RGCY 8 cut(s) 47, 248, 292, 352, 391, 426, 455, 488
DdeI CTNAG 2 cut(s) 101, 288
DpnI GATC 2 cut(s) 111, 242
DpnII GATC 2 cut(s) 109, 240
Eam1104I CTCTTC 1 cut(s) 473
EarI CTCTTC 1 cut(s) 473
EcoT22I ATGCAT 1 cut(s) 409
FaeI CATG 3 cut(s) 149, 272, 476
FaiI YATR 9 cut(s) 50, 75, 128, 147, 171, 237, 270, 474, 485
FatI CATG 3 cut(s) 145, 268, 472
FauI CCCGC 1 cut(s) 86
FspBI CTAG 2 cut(s) 456, 525
GsuI CTGGAG 1 cut(s) 285
HaeIII GGCC 1 cut(s) 426
HgaI GACGC 1 cut(s) 47
Hin1II CATG 3 cut(s) 149, 272, 476
HinfI GANTC 3 cut(s) 434, 445, 497
Hpy166II GTNNAC 1 cut(s) 313
Hpy188III TCNNGA 3 cut(s) 107, 230, 302
Hpy8I GTNNAC 1 cut(s) 313
HpyCH4III ACNGT 1 cut(s) 533
HpyCH4IV ACGT 1 cut(s) 184
HpyCH4V TGCA 2 cut(s) 34, 407
HpyF3I CTNAG 2 cut(s) 101, 288
HpySE526I ACGT 1 cut(s) 184
Hsp92II CATG 3 cut(s) 149, 272, 476
Kzo9I GATC 2 cut(s) 109, 240
LguI GCTCTTC 1 cut(s) 473
LmnI GCTCC 1 cut(s) 493
LpnPI CCDG 3 cut(s) 294, 315, 489
LweI GCATC 2 cut(s) 394, 416
MaeI CTAG 2 cut(s) 456, 525
MaeII ACGT 1 cut(s) 184
MaeIII GTNAC 2 cut(s) 442, 527
MalI GATC 2 cut(s) 111, 242
MboI GATC 2 cut(s) 109, 240
MboII GAAGA 3 cut(s) 104, 332, 490
MflI RGATCY 1 cut(s) 109
MluCI AATT 4 cut(s) 62, 83, 188, 362
MlyI GAGTC 1 cut(s) 439
MmeI TCCRAC 1 cut(s) 140
MnlI CCTC 2 cut(s) 206, 331
Mph1103I ATGCAT 1 cut(s) 409
MseI TTAA 2 cut(s) 192, 357
NdeII GATC 2 cut(s) 109, 240
NlaIII CATG 3 cut(s) 149, 272, 476
NmuCI GTSAC 1 cut(s) 442
NsiI ATGCAT 1 cut(s) 409
NspI RCATGY 2 cut(s) 272, 476
NspV TTCGAA 1 cut(s) 254
PciI ACATGT 2 cut(s) 268, 472
PciSI GCTCTTC 1 cut(s) 473
PfeI GAWTC 2 cut(s) 434, 497
PleI GAGTC 1 cut(s) 439
PpsI GAGTC 1 cut(s) 439
PscI ACATGT 2 cut(s) 268, 472
PspPI GGNCC 1 cut(s) 425
PstNI CAGNNNCTG 1 cut(s) 287
PsuI RGATCY 1 cut(s) 109
SapI GCTCTTC 1 cut(s) 473
SaqAI TTAA 2 cut(s) 192, 357
Sau3AI GATC 2 cut(s) 109, 240
Sau96I GGNCC 1 cut(s) 425
SchI GAGTC 1 cut(s) 439
SetI ASST 8 cut(s) 49, 142, 163, 187, 217, 294, 342, 490
SfaNI GCATC 2 cut(s) 394, 416
SfcI CTRYAG 1 cut(s) 156
SfuI TTCGAA 1 cut(s) 254
SpeI ACTAGT 1 cut(s) 524
Sse9I AATT 4 cut(s) 62, 83, 188, 362
SsiI CCGC 1 cut(s) 79
SspI AATATT 1 cut(s) 259
SspMI CTAG 2 cut(s) 456, 525
TaaI ACNGT 1 cut(s) 533
TaiI ACGT 1 cut(s) 187
TaqI TCGA 3 cut(s) 39, 254, 521
TasI AATT 4 cut(s) 62, 83, 188, 362
TfiI GAWTC 2 cut(s) 434, 497
Tru1I TTAA 2 cut(s) 192, 357
Tru9I TTAA 2 cut(s) 192, 357
TscAI CASTG 1 cut(s) 385
TseFI GTSAC 1 cut(s) 442
Tsp45I GTSAC 1 cut(s) 442
TspDTI ATGAA 1 cut(s) 65
TspRI CASTG 1 cut(s) 385
XceI RCATGY 2 cut(s) 272, 476
XspI CTAG 2 cut(s) 456, 525
Zsp2I ATGCAT 1 cut(s) 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.