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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 283 |
| AciI | CCGC | 1 cut(s) | 59 |
| AcsI | RAATTY | 1 cut(s) | 356 |
| AfaI | GTAC | 2 cut(s) | 39, 225 |
| AflII | CTTAAG | 1 cut(s) | 464 |
| AjiI | CACGTC | 1 cut(s) | 452 |
| AjnI | CCWGG | 5 cut(s) | 27, 129, 153, 181, 306 |
| AluBI | AGCT | 2 cut(s) | 257, 394 |
| AluI | AGCT | 2 cut(s) | 257, 394 |
| Alw21I | GWGCWC | 1 cut(s) | 457 |
| Alw26I | GTCTC | 1 cut(s) | 323 |
| AoxI | GGCC | 1 cut(s) | 30 |
| ApeKI | GCWGC | 2 cut(s) | 56, 391 |
| ApoI | RAATTY | 1 cut(s) | 356 |
| AspS9I | GGNCC | 1 cut(s) | 4 |
| AsuHPI | GGTGA | 1 cut(s) | 338 |
| AvaII | GGWCC | 1 cut(s) | 4 |
| BanI | GGYRCC | 1 cut(s) | 283 |
| Bbv12I | GWGCWC | 1 cut(s) | 457 |
| BbvCI | CCTCAGC | 1 cut(s) | 12 |
| BbvI | GCAGC | 2 cut(s) | 68, 403 |
| BciT130I | CCWGG | 5 cut(s) | 29, 131, 155, 183, 308 |
| BcoDI | GTCTC | 1 cut(s) | 323 |
| BfaI | CTAG | 1 cut(s) | 197 |
| BfmI | CTRYAG | 1 cut(s) | 252 |
| BfrI | CTTAAG | 1 cut(s) | 464 |
| BisI | GCNGC | 2 cut(s) | 57, 392 |
| BlpI | GCTNAGC | 1 cut(s) | 93 |
| BlsI | GCNGC | 2 cut(s) | 58, 393 |
| Bme1390I | CCNGG | 5 cut(s) | 29, 131, 155, 183, 308 |
| Bme18I | GGWCC | 1 cut(s) | 4 |
| BmgBI | CACGTC | 1 cut(s) | 452 |
| BmgT120I | GGNCC | 1 cut(s) | 4 |
| BmiI | GGNNCC | 2 cut(s) | 123, 285 |
| BmrFI | CCNGG | 5 cut(s) | 29, 131, 155, 183, 308 |
| BmsI | GCATC | 1 cut(s) | 301 |
| Bpu10I | CCTNAGC | 1 cut(s) | 12 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 93 |
| BsaI | GGTCTC | 1 cut(s) | 323 |
| BsaJI | CCNNGG | 1 cut(s) | 182 |
| Bse1I | ACTGG | 2 cut(s) | 234, 365 |
| BseBI | CCWGG | 5 cut(s) | 29, 131, 155, 183, 308 |
| BseDI | CCNNGG | 1 cut(s) | 182 |
| BseGI | GGATG | 1 cut(s) | 316 |
| BseMII | CTCAG | 3 cut(s) | 26, 84, 162 |
| BseNI | ACTGG | 2 cut(s) | 234, 365 |
| BseRI | GAGGAG | 1 cut(s) | 362 |
| BseXI | GCAGC | 2 cut(s) | 68, 403 |
| BshFI | GGCC | 1 cut(s) | 32 |
| BshNI | GGYRCC | 1 cut(s) | 283 |
| BsiHKAI | GWGCWC | 1 cut(s) | 457 |
| BslFI | GGGAC | 1 cut(s) | 161 |
| BsmAI | GTCTC | 1 cut(s) | 323 |
| BsmFI | GGGAC | 1 cut(s) | 161 |
| BsnI | GGCC | 1 cut(s) | 32 |
| Bso31I | GGTCTC | 1 cut(s) | 323 |
| Bsp1286I | GDGCHC | 1 cut(s) | 457 |
| Bsp143I | GATC | 2 cut(s) | 79, 369 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 93 |
| BspACI | CCGC | 1 cut(s) | 59 |
| BspANI | GGCC | 1 cut(s) | 32 |
| BspCNI | CTCAG | 3 cut(s) | 25, 85, 161 |
| BspLI | GGNNCC | 2 cut(s) | 123, 285 |
| BspT107I | GGYRCC | 1 cut(s) | 283 |
| BspTI | CTTAAG | 1 cut(s) | 464 |
| BspTNI | GGTCTC | 1 cut(s) | 323 |
| BsrI | ACTGG | 2 cut(s) | 234, 365 |
| BssECI | CCNNGG | 1 cut(s) | 182 |
| BssMI | GATC | 2 cut(s) | 79, 369 |
| Bst2UI | CCWGG | 5 cut(s) | 29, 131, 155, 183, 308 |
| Bst4CI | ACNGT | 1 cut(s) | 418 |
| BstAFI | CTTAAG | 1 cut(s) | 464 |
| BstDEI | CTNAG | 4 cut(s) | 12, 93, 148, 375 |
| BstF5I | GGATG | 1 cut(s) | 316 |
| BstKTI | GATC | 2 cut(s) | 82, 372 |
| BstMAI | GTCTC | 1 cut(s) | 323 |
| BstMBI | GATC | 2 cut(s) | 79, 369 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 56 |
| BstNI | CCWGG | 5 cut(s) | 29, 131, 155, 183, 308 |
| BstNSI | RCATGY | 1 cut(s) | 101 |
| BstSCI | CCNGG | 5 cut(s) | 27, 129, 153, 181, 306 |
| BstSFI | CTRYAG | 1 cut(s) | 252 |
| BstV1I | GCAGC | 2 cut(s) | 68, 403 |
| BsuRI | GGCC | 1 cut(s) | 32 |
| BtrI | CACGTC | 1 cut(s) | 452 |
| BtsCI | GGATG | 1 cut(s) | 316 |
| BtsIMutI | CAGTG | 1 cut(s) | 372 |
| Cfr13I | GGNCC | 1 cut(s) | 4 |
| CseI | GACGC | 1 cut(s) | 163 |
| CsiI | ACCWGGT | 1 cut(s) | 129 |
| Csp6I | GTAC | 2 cut(s) | 38, 224 |
| CviAII | CATG | 2 cut(s) | 89, 98 |
| CviJI | RGCY | 6 cut(s) | 32, 158, 196, 257, 394, 412 |
| CviKI_1 | RGCY | 6 cut(s) | 32, 158, 196, 257, 394, 412 |
| CviQI | GTAC | 2 cut(s) | 38, 224 |
| DdeI | CTNAG | 4 cut(s) | 12, 93, 148, 375 |
| DpnI | GATC | 2 cut(s) | 81, 371 |
| DpnII | GATC | 2 cut(s) | 79, 369 |
| Eco147I | AGGCCT | 1 cut(s) | 32 |
| Eco31I | GGTCTC | 1 cut(s) | 323 |
| Eco47I | GGWCC | 1 cut(s) | 4 |
| EcoRII | CCWGG | 5 cut(s) | 27, 129, 153, 181, 306 |
| FaeI | CATG | 2 cut(s) | 92, 101 |
| FaiI | YATR | 5 cut(s) | 90, 99, 231, 297, 461 |
| FaqI | GGGAC | 1 cut(s) | 161 |
| FatI | CATG | 2 cut(s) | 88, 97 |
| Fnu4HI | GCNGC | 2 cut(s) | 57, 392 |
| FokI | GGATG | 1 cut(s) | 323 |
| Fsp4HI | GCNGC | 2 cut(s) | 57, 392 |
| FspBI | CTAG | 1 cut(s) | 197 |
| GluI | GCNGC | 2 cut(s) | 57, 392 |
| HaeIII | GGCC | 1 cut(s) | 32 |
| HgaI | GACGC | 1 cut(s) | 163 |
| Hin1II | CATG | 2 cut(s) | 92, 101 |
| HincII | GTYRAC | 1 cut(s) | 140 |
| HindII | GTYRAC | 1 cut(s) | 140 |
| HinfI | GANTC | 1 cut(s) | 209 |
| HphI | GGTGA | 1 cut(s) | 338 |
| Hpy166II | GTNNAC | 1 cut(s) | 140 |
| Hpy188I | TCNGA | 3 cut(s) | 151, 192, 214 |
| Hpy188III | TCNNGA | 2 cut(s) | 125, 169 |
| Hpy8I | GTNNAC | 1 cut(s) | 140 |
| HpyAV | CCTTC | 2 cut(s) | 104, 297 |
| HpyCH4III | ACNGT | 1 cut(s) | 418 |
| HpyCH4IV | ACGT | 1 cut(s) | 451 |
| HpyCH4V | TGCA | 3 cut(s) | 56, 221, 427 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 56 |
| HpyF3I | CTNAG | 4 cut(s) | 12, 93, 148, 375 |
| HpySE526I | ACGT | 1 cut(s) | 451 |
| Hsp92II | CATG | 2 cut(s) | 92, 101 |
| Kzo9I | GATC | 2 cut(s) | 79, 369 |
| LmnI | GCTCC | 1 cut(s) | 470 |
| Lsp1109I | GCAGC | 2 cut(s) | 68, 403 |
| LweI | GCATC | 1 cut(s) | 301 |
| MabI | ACCWGGT | 1 cut(s) | 129 |
| MaeI | CTAG | 1 cut(s) | 197 |
| MaeII | ACGT | 1 cut(s) | 451 |
| MaeIII | GTNAC | 2 cut(s) | 266, 442 |
| MalI | GATC | 2 cut(s) | 81, 371 |
| MboI | GATC | 2 cut(s) | 79, 369 |
| MboII | GAAGA | 1 cut(s) | 153 |
| MfeI | CAATTG | 1 cut(s) | 17 |
| MhlI | GDGCHC | 1 cut(s) | 457 |
| MluCI | AATT | 3 cut(s) | 17, 321, 356 |
| MlyI | GAGTC | 1 cut(s) | 203 |
| MmeI | TCCRAC | 1 cut(s) | 84 |
| MseI | TTAA | 4 cut(s) | 320, 420, 465, 490 |
| MspA1I | CMGCKG | 1 cut(s) | 59 |
| MspCI | CTTAAG | 1 cut(s) | 464 |
| MspR9I | CCNGG | 5 cut(s) | 29, 131, 155, 183, 308 |
| MunI | CAATTG | 1 cut(s) | 17 |
| MvaI | CCWGG | 5 cut(s) | 29, 131, 155, 183, 308 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 56 |
| NdeII | GATC | 2 cut(s) | 79, 369 |
| NlaIII | CATG | 2 cut(s) | 92, 101 |
| NlaIV | GGNNCC | 2 cut(s) | 123, 285 |
| NmuCI | GTSAC | 1 cut(s) | 266 |
| NspI | RCATGY | 1 cut(s) | 101 |
| PceI | AGGCCT | 1 cut(s) | 32 |
| PkrI | GCNGC | 2 cut(s) | 58, 393 |
| PleI | GAGTC | 1 cut(s) | 203 |
| PpsI | GAGTC | 1 cut(s) | 203 |
| Psp6I | CCWGG | 5 cut(s) | 27, 129, 153, 181, 306 |
| PspGI | CCWGG | 5 cut(s) | 27, 129, 153, 181, 306 |
| PspN4I | GGNNCC | 2 cut(s) | 123, 285 |
| PspPI | GGNCC | 1 cut(s) | 4 |
| RsaI | GTAC | 2 cut(s) | 39, 225 |
| RsaNI | GTAC | 2 cut(s) | 38, 224 |
| SaqAI | TTAA | 4 cut(s) | 320, 420, 465, 490 |
| SatI | GCNGC | 2 cut(s) | 57, 392 |
| Sau3AI | GATC | 2 cut(s) | 79, 369 |
| Sau96I | GGNCC | 1 cut(s) | 4 |
| SchI | GAGTC | 1 cut(s) | 203 |
| ScrFI | CCNGG | 5 cut(s) | 29, 131, 155, 183, 308 |
| SduI | GDGCHC | 1 cut(s) | 457 |
| SexAI | ACCWGGT | 1 cut(s) | 129 |
| SfaNI | GCATC | 1 cut(s) | 301 |
| SfcI | CTRYAG | 1 cut(s) | 252 |
| SinI | GGWCC | 1 cut(s) | 4 |
| SmlI | CTYRAG | 1 cut(s) | 464 |
| SmoI | CTYRAG | 1 cut(s) | 464 |
| Sse9I | AATT | 3 cut(s) | 17, 321, 356 |
| SseBI | AGGCCT | 1 cut(s) | 32 |
| SsiI | CCGC | 1 cut(s) | 59 |
| SspMI | CTAG | 1 cut(s) | 197 |
| StuI | AGGCCT | 1 cut(s) | 32 |
| StyD4I | CCNGG | 5 cut(s) | 27, 129, 153, 181, 306 |
| TaaI | ACNGT | 1 cut(s) | 418 |
| TaiI | ACGT | 1 cut(s) | 454 |
| TaqI | TCGA | 1 cut(s) | 168 |
| TasI | AATT | 3 cut(s) | 17, 321, 356 |
| Tru1I | TTAA | 4 cut(s) | 320, 420, 465, 490 |
| Tru9I | TTAA | 4 cut(s) | 320, 420, 465, 490 |
| TscAI | CASTG | 1 cut(s) | 372 |
| TseFI | GTSAC | 1 cut(s) | 266 |
| TseI | GCWGC | 2 cut(s) | 56, 391 |
| Tsp45I | GTSAC | 1 cut(s) | 266 |
| TspDTI | ATGAA | 1 cut(s) | 77 |
| TspRI | CASTG | 1 cut(s) | 372 |
| Vha464I | CTTAAG | 1 cut(s) | 464 |
| VpaK11BI | GGWCC | 1 cut(s) | 4 |
| XapI | RAATTY | 1 cut(s) | 356 |
| XceI | RCATGY | 1 cut(s) | 101 |
| XspI | CTAG | 1 cut(s) | 197 |