Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 470 |
| AccII | CGCG | 1 cut(s) | 310 |
| AciI | CCGC | 2 cut(s) | 34, 452 |
| AclWI | GGATC | 2 cut(s) | 11, 24 |
| AcyI | GRCGYC | 1 cut(s) | 322 |
| AdeI | CACNNNGTG | 1 cut(s) | 470 |
| AfaI | GTAC | 2 cut(s) | 25, 351 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 401, 533 |
| AflIII | ACRYGT | 1 cut(s) | 412 |
| AgsI | TTSAA | 3 cut(s) | 10, 267, 410 |
| AluBI | AGCT | 2 cut(s) | 86, 530 |
| AluI | AGCT | 2 cut(s) | 86, 530 |
| AlwI | GGATC | 2 cut(s) | 11, 24 |
| AoxI | GGCC | 2 cut(s) | 259, 536 |
| ApeKI | GCWGC | 3 cut(s) | 171, 200, 461 |
| AspLEI | GCGC | 1 cut(s) | 312 |
| AspS9I | GGNCC | 2 cut(s) | 259, 536 |
| AsuC2I | CCSGG | 3 cut(s) | 92, 280, 468 |
| AsuHPI | GGTGA | 1 cut(s) | 134 |
| BaeGI | GKGCMC | 2 cut(s) | 162, 475 |
| BamHI | GGATCC | 1 cut(s) | 16 |
| BanI | GGYRCC | 1 cut(s) | 470 |
| BbvCI | CCTCAGC | 1 cut(s) | 345 |
| BbvI | GCAGC | 3 cut(s) | 183, 187, 448 |
| BccI | CCATC | 2 cut(s) | 334, 445 |
| BceAI | ACGGC | 1 cut(s) | 246 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 288, 322 |
| BcnI | CCSGG | 3 cut(s) | 92, 280, 468 |
| BfaI | CTAG | 4 cut(s) | 54, 111, 383, 491 |
| BisI | GCNGC | 3 cut(s) | 172, 201, 462 |
| BlsI | GCNGC | 3 cut(s) | 173, 202, 463 |
| Bme1390I | CCNGG | 3 cut(s) | 92, 280, 468 |
| BmgT120I | GGNCC | 2 cut(s) | 259, 536 |
| BmiI | GGNNCC | 4 cut(s) | 18, 260, 472, 537 |
| BmrFI | CCNGG | 3 cut(s) | 92, 280, 468 |
| Bpu10I | CCTNAGC | 2 cut(s) | 345, 396 |
| BpuMI | CCSGG | 3 cut(s) | 92, 280, 468 |
| BsaHI | GRCGYC | 1 cut(s) | 322 |
| BsaJI | CCNNGG | 3 cut(s) | 90, 222, 555 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 307, 337 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 401, 533 |
| Bse1I | ACTGG | 1 cut(s) | 18 |
| BseDI | CCNNGG | 3 cut(s) | 90, 222, 555 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 401, 533 |
| BseMII | CTCAG | 4 cut(s) | 115, 336, 387, 438 |
| BseNI | ACTGG | 1 cut(s) | 18 |
| BseRI | GAGGAG | 1 cut(s) | 242 |
| BseSI | GKGCMC | 2 cut(s) | 162, 475 |
| BseXI | GCAGC | 3 cut(s) | 183, 187, 448 |
| BsgI | GTGCAG | 3 cut(s) | 315, 389, 447 |
| Bsh1236I | CGCG | 1 cut(s) | 310 |
| Bsh1285I | CGRYCG | 1 cut(s) | 358 |
| BshFI | GGCC | 2 cut(s) | 261, 538 |
| BshNI | GGYRCC | 1 cut(s) | 470 |
| BsiEI | CGRYCG | 1 cut(s) | 358 |
| BsiSI | CCGG | 3 cut(s) | 92, 279, 468 |
| BslFI | GGGAC | 1 cut(s) | 377 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 401, 533 |
| BsmFI | GGGAC | 1 cut(s) | 377 |
| BsmI | GAATGC | 1 cut(s) | 487 |
| BsnI | GGCC | 2 cut(s) | 261, 538 |
| Bsp1286I | GDGCHC | 2 cut(s) | 162, 475 |
| Bsp143I | GATC | 4 cut(s) | 16, 212, 253, 355 |
| BspACI | CCGC | 2 cut(s) | 34, 452 |
| BspANI | GGCC | 2 cut(s) | 261, 538 |
| BspCNI | CTCAG | 4 cut(s) | 114, 337, 388, 437 |
| BspFNI | CGCG | 1 cut(s) | 310 |
| BspLI | GGNNCC | 4 cut(s) | 18, 260, 472, 537 |
| BspPI | GGATC | 2 cut(s) | 11, 24 |
| BspT107I | GGYRCC | 1 cut(s) | 470 |
| BsrI | ACTGG | 1 cut(s) | 18 |
| BssECI | CCNNGG | 3 cut(s) | 90, 222, 555 |
| BssMI | GATC | 4 cut(s) | 16, 212, 253, 355 |
| BssNI | GRCGYC | 1 cut(s) | 322 |
| BssT1I | CCWWGG | 1 cut(s) | 222 |
| Bst4CI | ACNGT | 3 cut(s) | 40, 250, 559 |
| BstACI | GRCGYC | 1 cut(s) | 322 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 470 |
| BstC8I | GCNNGC | 4 cut(s) | 84, 240, 450, 528 |
| BstDEI | CTNAG | 4 cut(s) | 101, 345, 396, 424 |
| BstDSI | CCRYGG | 1 cut(s) | 555 |
| BstFNI | CGCG | 1 cut(s) | 310 |
| BstHHI | GCGC | 1 cut(s) | 312 |
| BstKTI | GATC | 4 cut(s) | 19, 215, 256, 358 |
| BstMBI | GATC | 4 cut(s) | 16, 212, 253, 355 |
| BstMCI | CGRYCG | 1 cut(s) | 358 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 458, 470, 491 |
| BstNSI | RCATGY | 3 cut(s) | 416, 506, 524 |
| BstSCI | CCNGG | 3 cut(s) | 90, 278, 466 |
| BstSLI | GKGCMC | 2 cut(s) | 162, 475 |
| BstUI | CGCG | 1 cut(s) | 310 |
| BstV1I | GCAGC | 3 cut(s) | 183, 187, 448 |
| BstX2I | RGATCY | 1 cut(s) | 16 |
| BstYI | RGATCY | 1 cut(s) | 16 |
| BsuRI | GGCC | 2 cut(s) | 261, 538 |
| BtgI | CCRYGG | 1 cut(s) | 555 |
| BtsIMutI | CAGTG | 1 cut(s) | 36 |
| Cac8I | GCNNGC | 4 cut(s) | 84, 240, 450, 528 |
| CfoI | GCGC | 1 cut(s) | 312 |
| Cfr13I | GGNCC | 2 cut(s) | 259, 536 |
| CseI | GACGC | 1 cut(s) | 311 |
| Csp6I | GTAC | 2 cut(s) | 24, 350 |
| CviAII | CATG | 4 cut(s) | 164, 413, 503, 521 |
| CviJI | RGCY | 9 cut(s) | 86, 238, 261, 344, 405, 430, 494, 530, 538 |
| CviKI_1 | RGCY | 9 cut(s) | 86, 238, 261, 344, 405, 430, 494, 530, 538 |
| CviQI | GTAC | 2 cut(s) | 24, 350 |
| DdeI | CTNAG | 4 cut(s) | 101, 345, 396, 424 |
| DpnI | GATC | 4 cut(s) | 18, 214, 255, 357 |
| DpnII | GATC | 4 cut(s) | 16, 212, 253, 355 |
| DraIII | CACNNNGTG | 1 cut(s) | 470 |
| Eco130I | CCWWGG | 1 cut(s) | 222 |
| EcoT14I | CCWWGG | 1 cut(s) | 222 |
| EcoT22I | ATGCAT | 1 cut(s) | 504 |
| ErhI | CCWWGG | 1 cut(s) | 222 |
| FaeI | CATG | 4 cut(s) | 167, 416, 506, 524 |
| FaiI | YATR | 9 cut(s) | 51, 165, 195, 414, 500, 504, 522, 552, 562 |
| FaqI | GGGAC | 1 cut(s) | 377 |
| FatI | CATG | 4 cut(s) | 163, 412, 502, 520 |
| Fnu4HI | GCNGC | 3 cut(s) | 172, 201, 462 |
| Fsp4HI | GCNGC | 3 cut(s) | 172, 201, 462 |
| FspBI | CTAG | 4 cut(s) | 54, 111, 383, 491 |
| GlaI | GCGC | 1 cut(s) | 311 |
| GluI | GCNGC | 3 cut(s) | 172, 201, 462 |
| HaeIII | GGCC | 2 cut(s) | 261, 538 |
| HapII | CCGG | 3 cut(s) | 92, 279, 468 |
| HgaI | GACGC | 1 cut(s) | 311 |
| HhaI | GCGC | 1 cut(s) | 312 |
| Hin1I | GRCGYC | 1 cut(s) | 322 |
| Hin1II | CATG | 4 cut(s) | 167, 416, 506, 524 |
| Hin6I | GCGC | 1 cut(s) | 310 |
| HinP1I | GCGC | 1 cut(s) | 310 |
| HinfI | GANTC | 4 cut(s) | 57, 105, 152, 422 |
| HpaII | CCGG | 3 cut(s) | 92, 279, 468 |
| HphI | GGTGA | 1 cut(s) | 134 |
| Hpy166II | GTNNAC | 1 cut(s) | 352 |
| Hpy188I | TCNGA | 3 cut(s) | 104, 360, 427 |
| Hpy8I | GTNNAC | 1 cut(s) | 352 |
| HpyAV | CCTTC | 2 cut(s) | 297, 334 |
| HpyCH4III | ACNGT | 3 cut(s) | 40, 250, 559 |
| HpyCH4IV | ACGT | 2 cut(s) | 292, 456 |
| HpyCH4V | TGCA | 7 cut(s) | 171, 332, 370, 464, 502, 520, 550 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 458, 470, 491 |
| HpyF3I | CTNAG | 4 cut(s) | 101, 345, 396, 424 |
| HpySE526I | ACGT | 2 cut(s) | 292, 456 |
| Hsp92I | GRCGYC | 1 cut(s) | 322 |
| Hsp92II | CATG | 4 cut(s) | 167, 416, 506, 524 |
| HspAI | GCGC | 1 cut(s) | 310 |
| Kzo9I | GATC | 4 cut(s) | 16, 212, 253, 355 |
| LmnI | GCTCC | 1 cut(s) | 91 |
| LpnPI | CCDG | 9 cut(s) | 59, 105, 292, 298, 320, 408, 462, 481, 540 |
| Lsp1109I | GCAGC | 3 cut(s) | 183, 187, 448 |
| MaeI | CTAG | 4 cut(s) | 54, 111, 383, 491 |
| MaeII | ACGT | 2 cut(s) | 292, 456 |
| MaeIII | GTNAC | 1 cut(s) | 293 |
| MalI | GATC | 4 cut(s) | 18, 214, 255, 357 |
| MboI | GATC | 4 cut(s) | 16, 212, 253, 355 |
| MflI | RGATCY | 1 cut(s) | 16 |
| MhlI | GDGCHC | 2 cut(s) | 162, 475 |
| MlyI | GAGTC | 2 cut(s) | 161, 416 |
| MmeI | TCCRAC | 1 cut(s) | 129 |
| MnlI | CCTC | 4 cut(s) | 220, 223, 340, 385 |
| Mph1103I | ATGCAT | 1 cut(s) | 504 |
| MspA1I | CMGCKG | 1 cut(s) | 530 |
| MspI | CCGG | 3 cut(s) | 92, 279, 468 |
| MspR9I | CCNGG | 3 cut(s) | 92, 280, 468 |
| Mva1269I | GAATGC | 1 cut(s) | 487 |
| MvnI | CGCG | 1 cut(s) | 310 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 458, 470, 491 |
| NciI | CCSGG | 3 cut(s) | 92, 280, 468 |
| NdeII | GATC | 4 cut(s) | 16, 212, 253, 355 |
| NlaIII | CATG | 4 cut(s) | 167, 416, 506, 524 |
| NlaIV | GGNNCC | 4 cut(s) | 18, 260, 472, 537 |
| NsiI | ATGCAT | 1 cut(s) | 504 |
| NspI | RCATGY | 3 cut(s) | 416, 506, 524 |
| PciI | ACATGT | 1 cut(s) | 412 |
| PctI | GAATGC | 1 cut(s) | 487 |
| PfeI | GAWTC | 2 cut(s) | 57, 105 |
| PflFI | GACNNNGTC | 1 cut(s) | 389 |
| PkrI | GCNGC | 3 cut(s) | 173, 202, 463 |
| Ple19I | CGATCG | 1 cut(s) | 358 |
| PleI | GAGTC | 2 cut(s) | 160, 416 |
| PpsI | GAGTC | 2 cut(s) | 160, 416 |
| PscI | ACATGT | 1 cut(s) | 412 |
| PspN4I | GGNNCC | 4 cut(s) | 18, 260, 472, 537 |
| PspPI | GGNCC | 2 cut(s) | 259, 536 |
| PsuI | RGATCY | 1 cut(s) | 16 |
| PsyI | GACNNNGTC | 1 cut(s) | 389 |
| PvuI | CGATCG | 1 cut(s) | 358 |
| PvuII | CAGCTG | 1 cut(s) | 530 |
| RsaI | GTAC | 2 cut(s) | 25, 351 |
| RsaNI | GTAC | 2 cut(s) | 24, 350 |
| SatI | GCNGC | 3 cut(s) | 172, 201, 462 |
| Sau3AI | GATC | 4 cut(s) | 16, 212, 253, 355 |
| Sau96I | GGNCC | 2 cut(s) | 259, 536 |
| SchI | GAGTC | 2 cut(s) | 161, 416 |
| ScrFI | CCNGG | 3 cut(s) | 92, 280, 468 |
| SduI | GDGCHC | 2 cut(s) | 162, 475 |
| SetI | ASST | 7 cut(s) | 88, 295, 308, 351, 377, 459, 532 |
| SsiI | CCGC | 2 cut(s) | 34, 452 |
| SspMI | CTAG | 4 cut(s) | 54, 111, 383, 491 |
| StyD4I | CCNGG | 3 cut(s) | 90, 278, 466 |
| StyI | CCWWGG | 1 cut(s) | 222 |
| TaaI | ACNGT | 3 cut(s) | 40, 250, 559 |
| TaiI | ACGT | 2 cut(s) | 295, 459 |
| TfiI | GAWTC | 2 cut(s) | 57, 105 |
| TscAI | CASTG | 1 cut(s) | 43 |
| TseI | GCWGC | 3 cut(s) | 171, 200, 461 |
| TspRI | CASTG | 1 cut(s) | 43 |
| Tth111I | GACNNNGTC | 1 cut(s) | 389 |
| XceI | RCATGY | 3 cut(s) | 416, 506, 524 |
| XspI | CTAG | 4 cut(s) | 54, 111, 383, 491 |
| Zsp2I | ATGCAT | 1 cut(s) | 504 |