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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 146 |
| Acc16I | TGCGCA | 1 cut(s) | 84 |
| AccII | CGCG | 1 cut(s) | 205 |
| AciI | CCGC | 4 cut(s) | 10, 194, 205, 253 |
| AclWI | GGATC | 1 cut(s) | 216 |
| AcoI | YGGCCR | 1 cut(s) | 160 |
| AcsI | RAATTY | 1 cut(s) | 331 |
| AcyI | GRCGYC | 1 cut(s) | 143 |
| AdeI | CACNNNGTG | 1 cut(s) | 217 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 286, 287, 431 |
| AgsI | TTSAA | 1 cut(s) | 245 |
| AjnI | CCWGG | 1 cut(s) | 74 |
| AluBI | AGCT | 1 cut(s) | 443 |
| AluI | AGCT | 1 cut(s) | 443 |
| Alw26I | GTCTC | 3 cut(s) | 134, 221, 226 |
| AlwI | GGATC | 1 cut(s) | 216 |
| AoxI | GGCC | 2 cut(s) | 160, 186 |
| ApeKI | GCWGC | 3 cut(s) | 80, 361, 421 |
| ApoI | RAATTY | 1 cut(s) | 331 |
| AspLEI | GCGC | 1 cut(s) | 85 |
| AsuNHI | GCTAGC | 1 cut(s) | 364 |
| BalI | TGGCCA | 1 cut(s) | 162 |
| BbsI | GAAGAC | 1 cut(s) | 284 |
| BbvI | GCAGC | 3 cut(s) | 67, 348, 433 |
| BccI | CCATC | 1 cut(s) | 64 |
| BciT130I | CCWGG | 1 cut(s) | 76 |
| BcoDI | GTCTC | 3 cut(s) | 134, 221, 226 |
| BfaI | CTAG | 3 cut(s) | 14, 147, 365 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 194 |
| BisI | GCNGC | 5 cut(s) | 11, 81, 195, 362, 422 |
| BlsI | GCNGC | 5 cut(s) | 12, 82, 196, 363, 423 |
| Bme1390I | CCNGG | 1 cut(s) | 76 |
| BmiI | GGNNCC | 2 cut(s) | 51, 278 |
| BmrFI | CCNGG | 1 cut(s) | 76 |
| BmsI | GCATC | 2 cut(s) | 88, 94 |
| BmtI | GCTAGC | 1 cut(s) | 368 |
| BpiI | GAAGAC | 1 cut(s) | 284 |
| BsaHI | GRCGYC | 1 cut(s) | 143 |
| BsaI | GGTCTC | 1 cut(s) | 226 |
| BsaJI | CCNNGG | 3 cut(s) | 74, 75, 189 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 218, 248 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 286, 287, 431 |
| BseBI | CCWGG | 1 cut(s) | 76 |
| BseDI | CCNNGG | 3 cut(s) | 74, 75, 189 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 286, 287, 431 |
| BseMII | CTCAG | 1 cut(s) | 222 |
| BseRI | GAGGAG | 1 cut(s) | 271 |
| BseXI | GCAGC | 3 cut(s) | 67, 348, 433 |
| Bsh1236I | CGCG | 1 cut(s) | 205 |
| BshFI | GGCC | 2 cut(s) | 162, 188 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 286, 287, 431 |
| BsmAI | GTCTC | 3 cut(s) | 134, 221, 226 |
| BsmBI | CGTCTC | 1 cut(s) | 134 |
| BsnI | GGCC | 2 cut(s) | 162, 188 |
| Bso31I | GGTCTC | 1 cut(s) | 226 |
| Bsp143I | GATC | 1 cut(s) | 208 |
| BspACI | CCGC | 4 cut(s) | 10, 194, 205, 253 |
| BspANI | GGCC | 2 cut(s) | 162, 188 |
| BspCNI | CTCAG | 1 cut(s) | 223 |
| BspFNI | CGCG | 1 cut(s) | 205 |
| BspHI | TCATGA | 1 cut(s) | 304 |
| BspLI | GGNNCC | 2 cut(s) | 51, 278 |
| BspOI | GCTAGC | 1 cut(s) | 368 |
| BspPI | GGATC | 1 cut(s) | 216 |
| BspTNI | GGTCTC | 1 cut(s) | 226 |
| BssECI | CCNNGG | 3 cut(s) | 74, 75, 189 |
| BssMI | GATC | 1 cut(s) | 208 |
| BssNI | GRCGYC | 1 cut(s) | 143 |
| Bst2UI | CCWGG | 1 cut(s) | 76 |
| Bst6I | CTCTTC | 1 cut(s) | 325 |
| BstACI | GRCGYC | 1 cut(s) | 143 |
| BstC8I | GCNNGC | 2 cut(s) | 366, 370 |
| BstDEI | CTNAG | 2 cut(s) | 231, 455 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 429 |
| BstFNI | CGCG | 1 cut(s) | 205 |
| BstHHI | GCGC | 1 cut(s) | 85 |
| BstKTI | GATC | 1 cut(s) | 211 |
| BstMAI | GTCTC | 3 cut(s) | 134, 221, 226 |
| BstMBI | GATC | 1 cut(s) | 208 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 194, 259 |
| BstNI | CCWGG | 1 cut(s) | 76 |
| BstSCI | CCNGG | 1 cut(s) | 74 |
| BstUI | CGCG | 1 cut(s) | 205 |
| BstV1I | GCAGC | 3 cut(s) | 67, 348, 433 |
| BstV2I | GAAGAC | 1 cut(s) | 284 |
| BsuRI | GGCC | 2 cut(s) | 162, 188 |
| Cac8I | GCNNGC | 2 cut(s) | 366, 370 |
| CciI | TCATGA | 1 cut(s) | 304 |
| CfoI | GCGC | 1 cut(s) | 85 |
| CseI | GACGC | 1 cut(s) | 113 |
| CviAII | CATG | 1 cut(s) | 305 |
| DdeI | CTNAG | 2 cut(s) | 231, 455 |
| DpnI | GATC | 1 cut(s) | 210 |
| DpnII | GATC | 1 cut(s) | 208 |
| DraIII | CACNNNGTG | 1 cut(s) | 217 |
| EaeI | YGGCCR | 1 cut(s) | 160 |
| Eam1104I | CTCTTC | 1 cut(s) | 325 |
| EarI | CTCTTC | 1 cut(s) | 325 |
| EciI | GGCGGA | 1 cut(s) | 268 |
| Eco147I | AGGCCT | 1 cut(s) | 188 |
| Eco31I | GGTCTC | 1 cut(s) | 226 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 429 |
| EcoRII | CCWGG | 1 cut(s) | 74 |
| Esp3I | CGTCTC | 1 cut(s) | 134 |
| FaeI | CATG | 1 cut(s) | 308 |
| FaiI | YATR | 6 cut(s) | 306, 327, 329, 431, 446, 467 |
| FatI | CATG | 1 cut(s) | 304 |
| FauI | CCCGC | 1 cut(s) | 198 |
| Fnu4HI | GCNGC | 5 cut(s) | 11, 81, 195, 362, 422 |
| Fsp4HI | GCNGC | 5 cut(s) | 11, 81, 195, 362, 422 |
| FspBI | CTAG | 3 cut(s) | 14, 147, 365 |
| FspI | TGCGCA | 1 cut(s) | 84 |
| GlaI | GCGC | 1 cut(s) | 84 |
| GluI | GCNGC | 5 cut(s) | 11, 81, 195, 362, 422 |
| HaeIII | GGCC | 2 cut(s) | 162, 188 |
| HgaI | GACGC | 1 cut(s) | 113 |
| HhaI | GCGC | 1 cut(s) | 85 |
| Hin1I | GRCGYC | 1 cut(s) | 143 |
| Hin1II | CATG | 1 cut(s) | 308 |
| Hin6I | GCGC | 1 cut(s) | 83 |
| HinP1I | GCGC | 1 cut(s) | 83 |
| HinfI | GANTC | 3 cut(s) | 200, 233, 241 |
| Hpy188I | TCNGA | 3 cut(s) | 139, 226, 238 |
| Hpy188III | TCNNGA | 2 cut(s) | 147, 305 |
| Hpy99I | CGWCG | 1 cut(s) | 107 |
| HpyAV | CCTTC | 3 cut(s) | 40, 291, 480 |
| HpyCH4IV | ACGT | 1 cut(s) | 143 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 194, 259 |
| HpyF3I | CTNAG | 2 cut(s) | 231, 455 |
| HpySE526I | ACGT | 1 cut(s) | 143 |
| Hsp92I | GRCGYC | 1 cut(s) | 143 |
| Hsp92II | CATG | 1 cut(s) | 308 |
| HspAI | GCGC | 1 cut(s) | 83 |
| Kzo9I | GATC | 1 cut(s) | 208 |
| LmnI | GCTCC | 1 cut(s) | 282 |
| LpnPI | CCDG | 5 cut(s) | 37, 61, 88, 363, 382 |
| Lsp1109I | GCAGC | 3 cut(s) | 67, 348, 433 |
| LweI | GCATC | 2 cut(s) | 88, 94 |
| MaeI | CTAG | 3 cut(s) | 14, 147, 365 |
| MaeII | ACGT | 1 cut(s) | 143 |
| MaeIII | GTNAC | 1 cut(s) | 16 |
| MalI | GATC | 1 cut(s) | 210 |
| MboI | GATC | 1 cut(s) | 208 |
| MboII | GAAGA | 3 cut(s) | 51, 284, 312 |
| MlsI | TGGCCA | 1 cut(s) | 162 |
| MluCI | AATT | 2 cut(s) | 331, 492 |
| MluNI | TGGCCA | 1 cut(s) | 162 |
| MlyI | GAGTC | 2 cut(s) | 194, 242 |
| MnlI | CCTC | 5 cut(s) | 178, 199, 243, 249, 252 |
| Mox20I | TGGCCA | 1 cut(s) | 162 |
| MscI | TGGCCA | 1 cut(s) | 162 |
| MseI | TTAA | 1 cut(s) | 69 |
| Msp20I | TGGCCA | 1 cut(s) | 162 |
| MspR9I | CCNGG | 1 cut(s) | 76 |
| MvaI | CCWGG | 1 cut(s) | 76 |
| MvnI | CGCG | 1 cut(s) | 205 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 194, 259 |
| NdeII | GATC | 1 cut(s) | 208 |
| NheI | GCTAGC | 1 cut(s) | 364 |
| NlaIII | CATG | 1 cut(s) | 308 |
| NlaIV | GGNNCC | 2 cut(s) | 51, 278 |
| NmeAIII | GCCGAG | 1 cut(s) | 170 |
| NsbI | TGCGCA | 1 cut(s) | 84 |
| PagI | TCATGA | 1 cut(s) | 304 |
| PasI | CCCWGGG | 1 cut(s) | 75 |
| PceI | AGGCCT | 1 cut(s) | 188 |
| PfeI | GAWTC | 1 cut(s) | 241 |
| PflFI | GACNNNGTC | 1 cut(s) | 232 |
| PkrI | GCNGC | 5 cut(s) | 12, 82, 196, 363, 423 |
| PleI | GAGTC | 2 cut(s) | 194, 241 |
| PpsI | GAGTC | 2 cut(s) | 194, 241 |
| Psp6I | CCWGG | 1 cut(s) | 74 |
| PspGI | CCWGG | 1 cut(s) | 74 |
| PspN4I | GGNNCC | 2 cut(s) | 51, 278 |
| PsyI | GACNNNGTC | 1 cut(s) | 232 |
| SaqAI | TTAA | 1 cut(s) | 69 |
| SatI | GCNGC | 5 cut(s) | 11, 81, 195, 362, 422 |
| Sau3AI | GATC | 1 cut(s) | 208 |
| SchI | GAGTC | 2 cut(s) | 194, 242 |
| ScrFI | CCNGG | 1 cut(s) | 76 |
| SetI | ASST | 4 cut(s) | 51, 146, 445, 491 |
| SfaNI | GCATC | 2 cut(s) | 88, 94 |
| Sse9I | AATT | 2 cut(s) | 331, 492 |
| SseBI | AGGCCT | 1 cut(s) | 188 |
| SsiI | CCGC | 4 cut(s) | 10, 194, 205, 253 |
| SspMI | CTAG | 3 cut(s) | 14, 147, 365 |
| StuI | AGGCCT | 1 cut(s) | 188 |
| StyD4I | CCNGG | 1 cut(s) | 74 |
| TaiI | ACGT | 1 cut(s) | 146 |
| TasI | AATT | 2 cut(s) | 331, 492 |
| TauI | GCSGC | 2 cut(s) | 13, 197 |
| TfiI | GAWTC | 1 cut(s) | 241 |
| Tru1I | TTAA | 1 cut(s) | 69 |
| Tru9I | TTAA | 1 cut(s) | 69 |
| TseI | GCWGC | 3 cut(s) | 80, 361, 421 |
| TspDTI | ATGAA | 4 cut(s) | 293, 304, 321, 461 |
| TspGWI | ACGGA | 1 cut(s) | 262 |
| Tth111I | GACNNNGTC | 1 cut(s) | 232 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 429 |
| XapI | RAATTY | 1 cut(s) | 331 |
| XbaI | TCTAGA | 1 cut(s) | 146 |
| XspI | CTAG | 3 cut(s) | 14, 147, 365 |
| ZraI | GACGTC | 1 cut(s) | 144 |