ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 852 |
| Acc36I | ACCTGC | 1 cut(s) | 251 |
| AccB1I | GGYRCC | 1 cut(s) | 1595 |
| AciI | CCGC | 1 cut(s) | 146 |
| AclWI | GGATC | 5 cut(s) | 404, 525, 1245, 1258, 1653 |
| AcoI | YGGCCR | 1 cut(s) | 733 |
| AcsI | RAATTY | 3 cut(s) | 102, 218, 1219 |
| AcuI | CTGAAG | 1 cut(s) | 1182 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 105, 106, 391, 1462, 1719, 1720 |
| AflIII | ACRYGT | 1 cut(s) | 1844 |
| AgsI | TTSAA | 8 cut(s) | 67, 641, 1044, 1685, 1761, 1813, 1903, 1912 |
| AhlI | ACTAGT | 1 cut(s) | 1673 |
| AjnI | CCWGG | 5 cut(s) | 70, 129, 940, 1253, 1457 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 204, 236 |
| AleI | CACNNNNGTG | 1 cut(s) | 887 |
| Alw21I | GWGCWC | 3 cut(s) | 687, 1444, 1498 |
| Alw44I | GTGCAC | 1 cut(s) | 683 |
| AlwI | GGATC | 5 cut(s) | 404, 525, 1245, 1258, 1653 |
| Ama87I | CYCGRG | 1 cut(s) | 1719 |
| AoxI | GGCC | 3 cut(s) | 733, 1691, 1905 |
| ApaLI | GTGCAC | 1 cut(s) | 683 |
| ApeKI | GCWGC | 4 cut(s) | 55, 1094, 1097, 1872 |
| ApoI | RAATTY | 3 cut(s) | 102, 218, 1219 |
| AspLEI | GCGC | 1 cut(s) | 1407 |
| AspS9I | GGNCC | 4 cut(s) | 895, 1109, 1514, 1778 |
| AsuHPI | GGTGA | 5 cut(s) | 86, 121, 671, 1484, 1808 |
| AvaI | CYCGRG | 1 cut(s) | 1719 |
| AvaII | GGWCC | 4 cut(s) | 895, 1109, 1514, 1778 |
| BaeGI | GKGCMC | 3 cut(s) | 363, 687, 1600 |
| BalI | TGGCCA | 1 cut(s) | 735 |
| BamHI | GGATCC | 1 cut(s) | 1250 |
| BanI | GGYRCC | 1 cut(s) | 1595 |
| BanII | GRGCYC | 1 cut(s) | 1498 |
| BauI | CACGAG | 2 cut(s) | 650, 1977 |
| Bbv12I | GWGCWC | 3 cut(s) | 687, 1444, 1498 |
| BbvI | GCAGC | 4 cut(s) | 67, 1081, 1084, 1859 |
| BccI | CCATC | 5 cut(s) | 277, 656, 1168, 1456, 1965 |
| BciT130I | CCWGG | 5 cut(s) | 72, 131, 942, 1255, 1459 |
| BclI | TGATCA | 2 cut(s) | 1305, 1732 |
| BcuI | ACTAGT | 1 cut(s) | 1673 |
| BfmI | CTRYAG | 1 cut(s) | 1590 |
| BfuAI | ACCTGC | 1 cut(s) | 251 |
| BisI | GCNGC | 4 cut(s) | 56, 1095, 1098, 1873 |
| BlsI | GCNGC | 4 cut(s) | 57, 1096, 1099, 1874 |
| Bme1390I | CCNGG | 5 cut(s) | 72, 131, 942, 1255, 1459 |
| Bme18I | GGWCC | 4 cut(s) | 895, 1109, 1514, 1778 |
| BmeT110I | CYCGRG | 1 cut(s) | 1719 |
| BmgT120I | GGNCC | 4 cut(s) | 895, 1109, 1514, 1778 |
| BmiI | GGNNCC | 6 cut(s) | 555, 1110, 1252, 1515, 1597, 1796 |
| BmrFI | CCNGG | 5 cut(s) | 72, 131, 942, 1255, 1459 |
| BmsI | GCATC | 3 cut(s) | 67, 151, 1552 |
| BsaBI | GATNNNNATC | 2 cut(s) | 252, 1956 |
| BsaJI | CCNNGG | 4 cut(s) | 549, 940, 1457, 1718 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 999, 1029 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 105, 106, 391, 1462, 1719, 1720 |
| Bse1I | ACTGG | 4 cut(s) | 31, 143, 1133, 1798 |
| Bse3DI | GCAATG | 3 cut(s) | 18, 185, 2007 |
| Bse8I | GATNNNNATC | 2 cut(s) | 252, 1956 |
| BseBI | CCWGG | 5 cut(s) | 72, 131, 942, 1255, 1459 |
| BseDI | CCNNGG | 4 cut(s) | 549, 940, 1457, 1718 |
| BseGI | GGATG | 6 cut(s) | 142, 763, 817, 979, 1467, 1957 |
| BseJI | GATNNNNATC | 2 cut(s) | 252, 1956 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 105, 106, 391, 1462, 1719, 1720 |
| BseMI | GCAATG | 3 cut(s) | 18, 185, 2007 |
| BseMII | CTCAG | 3 cut(s) | 906, 1158, 1443 |
| BseNI | ACTGG | 4 cut(s) | 31, 143, 1133, 1798 |
| BseRI | GAGGAG | 1 cut(s) | 1509 |
| BseSI | GKGCMC | 3 cut(s) | 363, 687, 1600 |
| BseXI | GCAGC | 4 cut(s) | 67, 1081, 1084, 1859 |
| BsgI | GTGCAG | 1 cut(s) | 951 |
| BshFI | GGCC | 3 cut(s) | 735, 1693, 1907 |
| BshNI | GGYRCC | 1 cut(s) | 1595 |
| BsiHKAI | GWGCWC | 3 cut(s) | 687, 1444, 1498 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1719 |
| BslFI | GGGAC | 2 cut(s) | 920, 1139 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 105, 106, 391, 1462, 1719, 1720 |
| BsmFI | GGGAC | 2 cut(s) | 920, 1139 |
| BsmI | GAATGC | 1 cut(s) | 1202 |
| BsnI | GGCC | 3 cut(s) | 735, 1693, 1907 |
| BsoBI | CYCGRG | 1 cut(s) | 1719 |
| Bsp1286I | GDGCHC | 5 cut(s) | 363, 687, 1444, 1498, 1600 |
| BspACI | CCGC | 1 cut(s) | 146 |
| BspANI | GGCC | 3 cut(s) | 735, 1693, 1907 |
| BspCNI | CTCAG | 3 cut(s) | 907, 1159, 1442 |
| BspHI | TCATGA | 2 cut(s) | 613, 1498 |
| BspLI | GGNNCC | 6 cut(s) | 555, 1110, 1252, 1515, 1597, 1796 |
| BspMI | ACCTGC | 1 cut(s) | 251 |
| BspPI | GGATC | 5 cut(s) | 404, 525, 1245, 1258, 1653 |
| BspT107I | GGYRCC | 1 cut(s) | 1595 |
| BsrDI | GCAATG | 3 cut(s) | 18, 185, 2007 |
| BsrI | ACTGG | 4 cut(s) | 31, 143, 1133, 1798 |
| BssECI | CCNNGG | 4 cut(s) | 549, 940, 1457, 1718 |
| BssSI | CACGAG | 2 cut(s) | 650, 1977 |
| Bst2BI | CACGAG | 2 cut(s) | 650, 1977 |
| Bst2UI | CCWGG | 5 cut(s) | 72, 131, 942, 1255, 1459 |
| Bst4CI | ACNGT | 7 cut(s) | 273, 386, 886, 1237, 1591, 1837, 1891 |
| Bst6I | CTCTTC | 3 cut(s) | 441, 565, 1201 |
| BstC8I | GCNNGC | 2 cut(s) | 733, 1922 |
| BstDEI | CTNAG | 6 cut(s) | 838, 915, 1167, 1277, 1361, 1429 |
| BstDSI | CCRYGG | 1 cut(s) | 549 |
| BstF5I | GGATG | 6 cut(s) | 142, 763, 817, 979, 1467, 1957 |
| BstHHI | GCGC | 1 cut(s) | 1407 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 737, 1642, 1982, 1991 |
| BstNI | CCWGG | 5 cut(s) | 72, 131, 942, 1255, 1459 |
| BstNSI | RCATGY | 4 cut(s) | 956, 1085, 1640, 1848 |
| BstSCI | CCNGG | 5 cut(s) | 70, 129, 940, 1253, 1457 |
| BstSFI | CTRYAG | 1 cut(s) | 1590 |
| BstSLI | GKGCMC | 3 cut(s) | 363, 687, 1600 |
| BstV1I | GCAGC | 4 cut(s) | 67, 1081, 1084, 1859 |
| BstX2I | RGATCY | 2 cut(s) | 1250, 1658 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1269 |
| BstYI | RGATCY | 2 cut(s) | 1250, 1658 |
| BsuRI | GGCC | 3 cut(s) | 735, 1693, 1907 |
| BtgI | CCRYGG | 1 cut(s) | 549 |
| BtsCI | GGATG | 6 cut(s) | 142, 763, 817, 979, 1467, 1957 |
| BtsIMutI | CAGTG | 2 cut(s) | 1587, 1887 |
| BveI | ACCTGC | 1 cut(s) | 251 |
| Cac8I | GCNNGC | 2 cut(s) | 733, 1922 |
| CciI | TCATGA | 2 cut(s) | 613, 1498 |
| CfoI | GCGC | 1 cut(s) | 1407 |
| Cfr13I | GGNCC | 4 cut(s) | 895, 1109, 1514, 1778 |
| CseI | GACGC | 1 cut(s) | 74 |
| DdeI | CTNAG | 6 cut(s) | 838, 915, 1167, 1277, 1361, 1429 |
| DraI | TTTAAA | 2 cut(s) | 492, 1218 |
| EaeI | YGGCCR | 1 cut(s) | 733 |
| Eam1104I | CTCTTC | 3 cut(s) | 441, 565, 1201 |
| EarI | CTCTTC | 3 cut(s) | 441, 565, 1201 |
| Ecl136II | GAGCTC | 1 cut(s) | 1496 |
| Eco147I | AGGCCT | 1 cut(s) | 1907 |
| Eco24I | GRGCYC | 1 cut(s) | 1498 |
| Eco47I | GGWCC | 4 cut(s) | 895, 1109, 1514, 1778 |
| Eco53kI | GAGCTC | 1 cut(s) | 1496 |
| Eco57I | CTGAAG | 1 cut(s) | 1182 |
| Eco88I | CYCGRG | 1 cut(s) | 1719 |
| EcoICRI | GAGCTC | 1 cut(s) | 1496 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1109, 1514 |
| EcoRII | CCWGG | 5 cut(s) | 70, 129, 940, 1253, 1457 |
| EcoT38I | GRGCYC | 1 cut(s) | 1498 |
| FaqI | GGGAC | 2 cut(s) | 920, 1139 |
| FbaI | TGATCA | 2 cut(s) | 1305, 1732 |
| Fnu4HI | GCNGC | 4 cut(s) | 56, 1095, 1098, 1873 |
| FokI | GGATG | 6 cut(s) | 129, 770, 824, 986, 1474, 1964 |
| FriOI | GRGCYC | 1 cut(s) | 1498 |
| Fsp4HI | GCNGC | 4 cut(s) | 56, 1095, 1098, 1873 |
| GlaI | GCGC | 1 cut(s) | 1406 |
| GluI | GCNGC | 4 cut(s) | 56, 1095, 1098, 1873 |
| HaeIII | GGCC | 3 cut(s) | 735, 1693, 1907 |
| HgaI | GACGC | 1 cut(s) | 74 |
| HhaI | GCGC | 1 cut(s) | 1407 |
| Hin6I | GCGC | 1 cut(s) | 1405 |
| HinP1I | GCGC | 1 cut(s) | 1405 |
| HincII | GTYRAC | 1 cut(s) | 481 |
| HindII | GTYRAC | 1 cut(s) | 481 |
| HindIII | AAGCTT | 2 cut(s) | 486, 1983 |
| HinfI | GANTC | 6 cut(s) | 395, 578, 785, 865, 1187, 1813 |
| HphI | GGTGA | 5 cut(s) | 86, 121, 671, 1484, 1808 |
| Hpy166II | GTNNAC | 3 cut(s) | 481, 505, 685 |
| Hpy188I | TCNGA | 5 cut(s) | 457, 1168, 1561, 1732, 1962 |
| Hpy188III | TCNNGA | 6 cut(s) | 614, 650, 1499, 1549, 1829, 1979 |
| Hpy8I | GTNNAC | 3 cut(s) | 481, 505, 685 |
| HpyAV | CCTTC | 2 cut(s) | 620, 1897 |
| HpyCH4III | ACNGT | 7 cut(s) | 273, 386, 886, 1237, 1591, 1837, 1891 |
| HpyCH4V | TGCA | 9 cut(s) | 190, 378, 418, 685, 932, 1636, 1668, 1894, 1994 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 737, 1642, 1982, 1991 |
| HpyF3I | CTNAG | 6 cut(s) | 838, 915, 1167, 1277, 1361, 1429 |
| HspAI | GCGC | 1 cut(s) | 1405 |
| Ksp22I | TGATCA | 2 cut(s) | 1305, 1732 |
| LmnI | GCTCC | 2 cut(s) | 1493, 1642 |
| Lsp1109I | GCAGC | 4 cut(s) | 67, 1081, 1084, 1859 |
| LweI | GCATC | 3 cut(s) | 67, 151, 1552 |
| MaeIII | GTNAC | 8 cut(s) | 45, 386, 622, 1231, 1330, 1472, 1829, 1885 |
| MboII | GAAGA | 4 cut(s) | 428, 552, 1066, 1188 |
| MfeI | CAATTG | 2 cut(s) | 191, 1467 |
| MflI | RGATCY | 2 cut(s) | 1250, 1658 |
| MhlI | GDGCHC | 5 cut(s) | 363, 687, 1444, 1498, 1600 |
| MlsI | TGGCCA | 1 cut(s) | 735 |
| MluNI | TGGCCA | 1 cut(s) | 735 |
| MlyI | GAGTC | 3 cut(s) | 404, 874, 1181 |
| MmeI | TCCRAC | 1 cut(s) | 1829 |
| Mox20I | TGGCCA | 1 cut(s) | 735 |
| MscI | TGGCCA | 1 cut(s) | 735 |
| MslI | CAYNNNNRTG | 5 cut(s) | 618, 741, 887, 957, 1962 |
| Msp20I | TGGCCA | 1 cut(s) | 735 |
| MspR9I | CCNGG | 5 cut(s) | 72, 131, 942, 1255, 1459 |
| MunI | CAATTG | 2 cut(s) | 191, 1467 |
| Mva1269I | GAATGC | 1 cut(s) | 1202 |
| MvaI | CCWGG | 5 cut(s) | 72, 131, 942, 1255, 1459 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 737, 1642, 1982, 1991 |
| NlaIV | GGNNCC | 6 cut(s) | 555, 1110, 1252, 1515, 1597, 1796 |
| NmuCI | GTSAC | 3 cut(s) | 1472, 1829, 1885 |
| NspI | RCATGY | 4 cut(s) | 956, 1085, 1640, 1848 |
| OliI | CACNNNNGTG | 1 cut(s) | 887 |
| PagI | TCATGA | 2 cut(s) | 613, 1498 |
| PceI | AGGCCT | 1 cut(s) | 1907 |
| PciI | ACATGT | 1 cut(s) | 1844 |
| PctI | GAATGC | 1 cut(s) | 1202 |
| PfeI | GAWTC | 3 cut(s) | 578, 785, 1813 |
| PkrI | GCNGC | 4 cut(s) | 57, 1096, 1099, 1874 |
| PleI | GAGTC | 3 cut(s) | 403, 873, 1181 |
| PpsI | GAGTC | 3 cut(s) | 403, 873, 1181 |
| PpuMI | RGGWCCY | 2 cut(s) | 1109, 1514 |
| PscI | ACATGT | 1 cut(s) | 1844 |
| PsiI | TTATAA | 1 cut(s) | 852 |
| Psp124BI | GAGCTC | 1 cut(s) | 1498 |
| Psp5II | RGGWCCY | 2 cut(s) | 1109, 1514 |
| Psp6I | CCWGG | 5 cut(s) | 70, 129, 940, 1253, 1457 |
| PspGI | CCWGG | 5 cut(s) | 70, 129, 940, 1253, 1457 |
| PspN4I | GGNNCC | 6 cut(s) | 555, 1110, 1252, 1515, 1597, 1796 |
| PspPI | GGNCC | 4 cut(s) | 895, 1109, 1514, 1778 |
| PspPPI | RGGWCCY | 2 cut(s) | 1109, 1514 |
| PsuI | RGATCY | 2 cut(s) | 1250, 1658 |
| RseI | CAYNNNNRTG | 5 cut(s) | 618, 741, 887, 957, 1962 |
| SacI | GAGCTC | 1 cut(s) | 1498 |
| SatI | GCNGC | 4 cut(s) | 56, 1095, 1098, 1873 |
| Sau96I | GGNCC | 4 cut(s) | 895, 1109, 1514, 1778 |
| SchI | GAGTC | 3 cut(s) | 404, 874, 1181 |
| ScrFI | CCNGG | 5 cut(s) | 72, 131, 942, 1255, 1459 |
| SduI | GDGCHC | 5 cut(s) | 363, 687, 1444, 1498, 1600 |
| SfaNI | GCATC | 3 cut(s) | 67, 151, 1552 |
| SfcI | CTRYAG | 1 cut(s) | 1590 |
| SinI | GGWCC | 4 cut(s) | 895, 1109, 1514, 1778 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 618, 741, 887, 957, 1962 |
| SpeI | ACTAGT | 1 cut(s) | 1673 |
| SseBI | AGGCCT | 1 cut(s) | 1907 |
| SsiI | CCGC | 1 cut(s) | 146 |
| SstI | GAGCTC | 1 cut(s) | 1498 |
| StuI | AGGCCT | 1 cut(s) | 1907 |
| StyD4I | CCNGG | 5 cut(s) | 70, 129, 940, 1253, 1457 |
| TaaI | ACNGT | 7 cut(s) | 273, 386, 886, 1237, 1591, 1837, 1891 |
| TaqI | TCGA | 4 cut(s) | 246, 573, 1246, 1648 |
| TfiI | GAWTC | 3 cut(s) | 578, 785, 1813 |
| TscAI | CASTG | 2 cut(s) | 1594, 1894 |
| TseFI | GTSAC | 3 cut(s) | 1472, 1829, 1885 |
| TseI | GCWGC | 4 cut(s) | 55, 1094, 1097, 1872 |
| Tsp45I | GTSAC | 3 cut(s) | 1472, 1829, 1885 |
| TspDTI | ATGAA | 5 cut(s) | 267, 558, 602, 734, 2006 |
| TspGWI | ACGGA | 1 cut(s) | 566 |
| TspRI | CASTG | 2 cut(s) | 1594, 1894 |
| VneI | GTGCAC | 1 cut(s) | 683 |
| VpaK11BI | GGWCC | 4 cut(s) | 895, 1109, 1514, 1778 |
| XapI | RAATTY | 3 cut(s) | 102, 218, 1219 |
| XceI | RCATGY | 4 cut(s) | 956, 1085, 1640, 1848 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1125 |