Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 690 |
| AatII | GACGTC | 1 cut(s) | 404 |
| AccB1I | GGYRCC | 3 cut(s) | 247, 470, 682 |
| AccBSI | CCGCTC | 1 cut(s) | 58 |
| AccI | GTMKAC | 1 cut(s) | 90 |
| AciI | CCGC | 2 cut(s) | 58, 533 |
| AclWI | GGATC | 1 cut(s) | 105 |
| AcsI | RAATTY | 4 cut(s) | 175, 281, 453, 735 |
| AcyI | GRCGYC | 1 cut(s) | 401 |
| AfaI | GTAC | 1 cut(s) | 184 |
| AflIII | ACRYGT | 1 cut(s) | 565 |
| AgsI | TTSAA | 4 cut(s) | 161, 232, 458, 527 |
| AhlI | ACTAGT | 1 cut(s) | 608 |
| AjiI | CACGTC | 1 cut(s) | 94 |
| AluBI | AGCT | 2 cut(s) | 47, 639 |
| AluI | AGCT | 2 cut(s) | 47, 639 |
| Alw26I | GTCTC | 1 cut(s) | 134 |
| AlwI | GGATC | 1 cut(s) | 105 |
| Ama87I | CYCGRG | 2 cut(s) | 78, 744 |
| AoxI | GGCC | 1 cut(s) | 501 |
| ApoI | RAATTY | 4 cut(s) | 175, 281, 453, 735 |
| AspLEI | GCGC | 2 cut(s) | 376, 514 |
| AspS9I | GGNCC | 2 cut(s) | 502, 730 |
| AsuHPI | GGTGA | 2 cut(s) | 119, 341 |
| AvaI | CYCGRG | 2 cut(s) | 78, 744 |
| AvaII | GGWCC | 1 cut(s) | 730 |
| BaeGI | GKGCMC | 2 cut(s) | 26, 252 |
| BanI | GGYRCC | 3 cut(s) | 247, 470, 682 |
| BbvCI | CCTCAGC | 1 cut(s) | 651 |
| BccI | CCATC | 2 cut(s) | 121, 190 |
| BceAI | ACGGC | 1 cut(s) | 565 |
| BclI | TGATCA | 2 cut(s) | 214, 346 |
| BcoDI | GTCTC | 1 cut(s) | 134 |
| BcuI | ACTAGT | 1 cut(s) | 608 |
| BfaI | CTAG | 3 cut(s) | 12, 609, 636 |
| BfoI | RGCGCY | 1 cut(s) | 377 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 509 |
| BisI | GCNGC | 1 cut(s) | 59 |
| BlsI | GCNGC | 1 cut(s) | 60 |
| Bme18I | GGWCC | 1 cut(s) | 730 |
| BmeT110I | CYCGRG | 2 cut(s) | 78, 744 |
| BmgBI | CACGTC | 1 cut(s) | 94 |
| BmgT120I | GGNCC | 2 cut(s) | 502, 730 |
| BmiI | GGNNCC | 7 cut(s) | 238, 249, 396, 472, 657, 663, 684 |
| BmsI | GCATC | 1 cut(s) | 541 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 127, 159 |
| Bpu10I | CCTNAGC | 1 cut(s) | 651 |
| BpuEI | CTTGAG | 2 cut(s) | 243, 679 |
| BsaHI | GRCGYC | 1 cut(s) | 401 |
| Bse1I | ACTGG | 2 cut(s) | 513, 665 |
| Bse3DI | GCAATG | 3 cut(s) | 29, 145, 555 |
| BseGI | GGATG | 4 cut(s) | 201, 556, 580, 634 |
| BseMI | GCAATG | 3 cut(s) | 29, 145, 555 |
| BseMII | CTCAG | 1 cut(s) | 642 |
| BseNI | ACTGG | 2 cut(s) | 513, 665 |
| BseRI | GAGGAG | 4 cut(s) | 557, 632, 668, 740 |
| BseSI | GKGCMC | 2 cut(s) | 26, 252 |
| BsgI | GTGCAG | 2 cut(s) | 296, 516 |
| BshFI | GGCC | 1 cut(s) | 503 |
| BshNI | GGYRCC | 3 cut(s) | 247, 470, 682 |
| BsiHKCI | CYCGRG | 2 cut(s) | 78, 744 |
| BsiSI | CCGG | 1 cut(s) | 659 |
| BsmAI | GTCTC | 1 cut(s) | 134 |
| BsnI | GGCC | 1 cut(s) | 503 |
| BsoBI | CYCGRG | 2 cut(s) | 78, 744 |
| Bsp1286I | GDGCHC | 2 cut(s) | 26, 252 |
| Bsp143I | GATC | 5 cut(s) | 97, 214, 286, 346, 715 |
| BspACI | CCGC | 2 cut(s) | 58, 533 |
| BspANI | GGCC | 1 cut(s) | 503 |
| BspCNI | CTCAG | 1 cut(s) | 643 |
| BspHI | TCATGA | 1 cut(s) | 385 |
| BspLI | GGNNCC | 7 cut(s) | 238, 249, 396, 472, 657, 663, 684 |
| BspPI | GGATC | 1 cut(s) | 105 |
| BspT107I | GGYRCC | 3 cut(s) | 247, 470, 682 |
| BsrBI | CCGCTC | 1 cut(s) | 58 |
| BsrDI | GCAATG | 3 cut(s) | 29, 145, 555 |
| BsrI | ACTGG | 2 cut(s) | 513, 665 |
| BssMI | GATC | 5 cut(s) | 97, 214, 286, 346, 715 |
| BssNI | GRCGYC | 1 cut(s) | 401 |
| Bst6I | CTCTTC | 2 cut(s) | 481, 522 |
| BstACI | GRCGYC | 1 cut(s) | 401 |
| BstC8I | GCNNGC | 1 cut(s) | 321 |
| BstDEI | CTNAG | 1 cut(s) | 651 |
| BstF5I | GGATG | 4 cut(s) | 201, 556, 580, 634 |
| BstH2I | RGCGCY | 1 cut(s) | 377 |
| BstHHI | GCGC | 2 cut(s) | 376, 514 |
| BstKTI | GATC | 5 cut(s) | 100, 217, 289, 349, 718 |
| BstMAI | GTCTC | 1 cut(s) | 134 |
| BstMBI | GATC | 5 cut(s) | 97, 214, 286, 346, 715 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 509 |
| BstSLI | GKGCMC | 2 cut(s) | 26, 252 |
| BstX2I | RGATCY | 1 cut(s) | 97 |
| BstYI | RGATCY | 1 cut(s) | 97 |
| BsuRI | GGCC | 1 cut(s) | 503 |
| BtrI | CACGTC | 1 cut(s) | 94 |
| BtsCI | GGATG | 4 cut(s) | 201, 556, 580, 634 |
| BtsI | GCAGTG | 2 cut(s) | 217, 504 |
| BtsIMutI | CAGTG | 2 cut(s) | 217, 504 |
| Cac8I | GCNNGC | 1 cut(s) | 321 |
| CciI | TCATGA | 1 cut(s) | 385 |
| CfoI | GCGC | 2 cut(s) | 376, 514 |
| Cfr13I | GGNCC | 2 cut(s) | 502, 730 |
| Csp6I | GTAC | 1 cut(s) | 183 |
| CviAII | CATG | 4 cut(s) | 208, 386, 674, 750 |
| CviJI | RGCY | 8 cut(s) | 47, 212, 323, 503, 580, 639, 650, 658 |
| CviKI_1 | RGCY | 8 cut(s) | 47, 212, 323, 503, 580, 639, 650, 658 |
| CviQI | GTAC | 1 cut(s) | 183 |
| DdeI | CTNAG | 1 cut(s) | 651 |
| DpnI | GATC | 5 cut(s) | 99, 216, 288, 348, 717 |
| DpnII | GATC | 5 cut(s) | 97, 214, 286, 346, 715 |
| Eam1104I | CTCTTC | 2 cut(s) | 481, 522 |
| EarI | CTCTTC | 2 cut(s) | 481, 522 |
| Eco47I | GGWCC | 1 cut(s) | 730 |
| Eco88I | CYCGRG | 2 cut(s) | 78, 744 |
| EcoRI | GAATTC | 1 cut(s) | 453 |
| FaeI | CATG | 4 cut(s) | 211, 389, 677, 753 |
| FatI | CATG | 4 cut(s) | 207, 385, 673, 749 |
| FbaI | TGATCA | 2 cut(s) | 214, 346 |
| FblI | GTMKAC | 1 cut(s) | 90 |
| Fnu4HI | GCNGC | 1 cut(s) | 59 |
| FokI | GGATG | 4 cut(s) | 208, 563, 587, 641 |
| Fsp4HI | GCNGC | 1 cut(s) | 59 |
| FspBI | CTAG | 3 cut(s) | 12, 609, 636 |
| GlaI | GCGC | 2 cut(s) | 375, 513 |
| GluI | GCNGC | 1 cut(s) | 59 |
| HaeII | RGCGCY | 1 cut(s) | 377 |
| HaeIII | GGCC | 1 cut(s) | 503 |
| HapII | CCGG | 1 cut(s) | 659 |
| HhaI | GCGC | 2 cut(s) | 376, 514 |
| Hin1I | GRCGYC | 1 cut(s) | 401 |
| Hin1II | CATG | 4 cut(s) | 211, 389, 677, 753 |
| Hin6I | GCGC | 2 cut(s) | 374, 512 |
| HinP1I | GCGC | 2 cut(s) | 374, 512 |
| HincII | GTYRAC | 1 cut(s) | 405 |
| HindII | GTYRAC | 1 cut(s) | 405 |
| HinfI | GANTC | 3 cut(s) | 81, 142, 632 |
| HpaII | CCGG | 1 cut(s) | 659 |
| HphI | GGTGA | 2 cut(s) | 119, 341 |
| Hpy166II | GTNNAC | 3 cut(s) | 91, 183, 405 |
| Hpy188I | TCNGA | 4 cut(s) | 346, 399, 481, 720 |
| Hpy188III | TCNNGA | 4 cut(s) | 302, 386, 441, 704 |
| Hpy8I | GTNNAC | 3 cut(s) | 91, 183, 405 |
| Hpy99I | CGWCG | 1 cut(s) | 403 |
| HpyAV | CCTTC | 1 cut(s) | 126 |
| HpyCH4IV | ACGT | 4 cut(s) | 93, 298, 401, 565 |
| HpyCH4V | TGCA | 4 cut(s) | 34, 222, 277, 497 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 509 |
| HpyF3I | CTNAG | 1 cut(s) | 651 |
| HpySE526I | ACGT | 4 cut(s) | 93, 298, 401, 565 |
| Hsp92I | GRCGYC | 1 cut(s) | 401 |
| Hsp92II | CATG | 4 cut(s) | 211, 389, 677, 753 |
| HspAI | GCGC | 2 cut(s) | 374, 512 |
| Ksp22I | TGATCA | 2 cut(s) | 214, 346 |
| Kzo9I | GATC | 5 cut(s) | 97, 214, 286, 346, 715 |
| LmnI | GCTCC | 1 cut(s) | 655 |
| LpnPI | CCDG | 7 cut(s) | 90, 305, 384, 393, 494, 672, 678 |
| LweI | GCATC | 1 cut(s) | 541 |
| MaeI | CTAG | 3 cut(s) | 12, 609, 636 |
| MaeII | ACGT | 4 cut(s) | 93, 298, 401, 565 |
| MaeIII | GTNAC | 1 cut(s) | 203 |
| MalI | GATC | 5 cut(s) | 99, 216, 288, 348, 717 |
| MbiI | CCGCTC | 1 cut(s) | 58 |
| MboI | GATC | 5 cut(s) | 97, 214, 286, 346, 715 |
| MboII | GAAGA | 2 cut(s) | 468, 539 |
| MfeI | CAATTG | 1 cut(s) | 590 |
| MflI | RGATCY | 1 cut(s) | 97 |
| MhlI | GDGCHC | 2 cut(s) | 26, 252 |
| MluCI | AATT | 8 cut(s) | 62, 110, 162, 175, 281, 453, 590, 735 |
| MlyI | GAGTC | 2 cut(s) | 90, 136 |
| MmeI | TCCRAC | 3 cut(s) | 351, 422, 528 |
| MslI | CAYNNNNRTG | 1 cut(s) | 611 |
| MspI | CCGG | 1 cut(s) | 659 |
| MunI | CAATTG | 1 cut(s) | 590 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 509 |
| NdeII | GATC | 5 cut(s) | 97, 214, 286, 346, 715 |
| NlaIII | CATG | 4 cut(s) | 211, 389, 677, 753 |
| NlaIV | GGNNCC | 7 cut(s) | 238, 249, 396, 472, 657, 663, 684 |
| NmuCI | GTSAC | 1 cut(s) | 203 |
| PaeR7I | CTCGAG | 2 cut(s) | 78, 744 |
| PagI | TCATGA | 1 cut(s) | 385 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 295 |
| PfeI | GAWTC | 1 cut(s) | 632 |
| PkrI | GCNGC | 1 cut(s) | 60 |
| PleI | GAGTC | 2 cut(s) | 89, 136 |
| PpsI | GAGTC | 2 cut(s) | 89, 136 |
| PsiI | TTATAA | 1 cut(s) | 690 |
| PspN4I | GGNNCC | 7 cut(s) | 238, 249, 396, 472, 657, 663, 684 |
| PspPI | GGNCC | 2 cut(s) | 502, 730 |
| PspXI | VCTCGAGB | 2 cut(s) | 78, 744 |
| PsuI | RGATCY | 1 cut(s) | 97 |
| RsaI | GTAC | 1 cut(s) | 184 |
| RsaNI | GTAC | 1 cut(s) | 183 |
| RseI | CAYNNNNRTG | 1 cut(s) | 611 |
| SatI | GCNGC | 1 cut(s) | 59 |
| Sau3AI | GATC | 5 cut(s) | 97, 214, 286, 346, 715 |
| Sau96I | GGNCC | 2 cut(s) | 502, 730 |
| SchI | GAGTC | 2 cut(s) | 90, 136 |
| SduI | GDGCHC | 2 cut(s) | 26, 252 |
| SetI | ASST | 9 cut(s) | 49, 96, 118, 238, 301, 393, 404, 568, 641 |
| SfaNI | GCATC | 1 cut(s) | 541 |
| Sfr274I | CTCGAG | 2 cut(s) | 78, 744 |
| SinI | GGWCC | 1 cut(s) | 730 |
| SlaI | CTCGAG | 2 cut(s) | 78, 744 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 611 |
| SmlI | CTYRAG | 4 cut(s) | 78, 258, 694, 744 |
| SmoI | CTYRAG | 4 cut(s) | 78, 258, 694, 744 |
| SpeI | ACTAGT | 1 cut(s) | 608 |
| Sse9I | AATT | 8 cut(s) | 62, 110, 162, 175, 281, 453, 590, 735 |
| SsiI | CCGC | 2 cut(s) | 58, 533 |
| SspI | AATATT | 1 cut(s) | 466 |
| SspMI | CTAG | 3 cut(s) | 12, 609, 636 |
| TaiI | ACGT | 4 cut(s) | 96, 301, 404, 568 |
| TaqI | TCGA | 3 cut(s) | 79, 310, 745 |
| TaqII | GACCGA | 1 cut(s) | 191 |
| TasI | AATT | 8 cut(s) | 62, 110, 162, 175, 281, 453, 590, 735 |
| TatI | WGTACW | 1 cut(s) | 182 |
| TauI | GCSGC | 1 cut(s) | 61 |
| TfiI | GAWTC | 1 cut(s) | 632 |
| TscAI | CASTG | 2 cut(s) | 224, 504 |
| TseFI | GTSAC | 1 cut(s) | 203 |
| Tsp45I | GTSAC | 1 cut(s) | 203 |
| TspDTI | ATGAA | 2 cut(s) | 374, 662 |
| TspRI | CASTG | 2 cut(s) | 224, 504 |
| VpaK11BI | GGWCC | 1 cut(s) | 730 |
| XapI | RAATTY | 4 cut(s) | 175, 281, 453, 735 |
| XhoI | CTCGAG | 2 cut(s) | 78, 744 |
| XmiI | GTMKAC | 1 cut(s) | 90 |
| XspI | CTAG | 3 cut(s) | 12, 609, 636 |
| ZraI | GACGTC | 1 cut(s) | 402 |