ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 770 |
| AarI | CACCTGC | 1 cut(s) | 1382 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1390 |
| AatII | GACGTC | 1 cut(s) | 731 |
| Acc36I | ACCTGC | 1 cut(s) | 1382 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 722 |
| AccII | CGCG | 1 cut(s) | 244 |
| AccIII | TCCGGA | 2 cut(s) | 144, 739 |
| AciI | CCGC | 2 cut(s) | 860, 1184 |
| AclWI | GGATC | 4 cut(s) | 489, 497, 510, 551 |
| AcoI | YGGCCR | 1 cut(s) | 275 |
| AcsI | RAATTY | 5 cut(s) | 448, 1047, 1175, 1532, 1803 |
| AcuI | CTGAAG | 3 cut(s) | 888, 1281, 1393 |
| AcyI | GRCGYC | 3 cut(s) | 26, 419, 728 |
| AfaI | GTAC | 5 cut(s) | 443, 672, 687, 1266, 1797 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 121, 144, 238, 722, 1366, 1380 |
| AgsI | TTSAA | 9 cut(s) | 179, 238, 337, 521, 694, 1322, 1543, 1619, 1660 |
| AjnI | CCWGG | 1 cut(s) | 1033 |
| AluBI | AGCT | 5 cut(s) | 385, 911, 959, 1089, 1604 |
| AluI | AGCT | 5 cut(s) | 385, 911, 959, 1089, 1604 |
| Alw21I | GWGCWC | 1 cut(s) | 598 |
| Alw26I | GTCTC | 3 cut(s) | 847, 935, 1706 |
| AlwI | GGATC | 4 cut(s) | 489, 497, 510, 551 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 875, 1057 |
| Ama87I | CYCGRG | 1 cut(s) | 825 |
| Aor13HI | TCCGGA | 2 cut(s) | 144, 739 |
| AoxI | GGCC | 4 cut(s) | 172, 275, 1448, 1674 |
| ApeKI | GCWGC | 4 cut(s) | 385, 908, 1060, 1601 |
| ApoI | RAATTY | 5 cut(s) | 448, 1047, 1175, 1532, 1803 |
| AseI | ATTAAT | 2 cut(s) | 747, 924 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1768 |
| AspLEI | GCGC | 3 cut(s) | 244, 405, 706 |
| AspS9I | GGNCC | 3 cut(s) | 366, 1245, 1640 |
| AsuHPI | GGTGA | 4 cut(s) | 49, 1184, 1363, 1801 |
| AvaI | CYCGRG | 1 cut(s) | 825 |
| AvaII | GGWCC | 3 cut(s) | 366, 1245, 1640 |
| BaeGI | GKGCMC | 1 cut(s) | 232 |
| BalI | TGGCCA | 1 cut(s) | 277 |
| BamHI | GGATCC | 1 cut(s) | 502 |
| BanII | GRGCYC | 2 cut(s) | 1405, 1528 |
| BauI | CACGAG | 1 cut(s) | 1338 |
| BbsI | GAAGAC | 1 cut(s) | 1002 |
| Bbv12I | GWGCWC | 1 cut(s) | 598 |
| BbvCI | CCTCAGC | 1 cut(s) | 1752 |
| BbvI | GCAGC | 4 cut(s) | 372, 920, 1072, 1613 |
| BccI | CCATC | 4 cut(s) | 118, 149, 442, 872 |
| BceAI | ACGGC | 1 cut(s) | 1128 |
| BciT130I | CCWGG | 1 cut(s) | 1035 |
| BclI | TGATCA | 1 cut(s) | 1351 |
| BcoDI | GTCTC | 3 cut(s) | 847, 935, 1706 |
| BfaI | CTAG | 3 cut(s) | 197, 569, 711 |
| BfmI | CTRYAG | 3 cut(s) | 1058, 1078, 1375 |
| BfuAI | ACCTGC | 1 cut(s) | 1382 |
| BglII | AGATCT | 2 cut(s) | 821, 833 |
| BisI | GCNGC | 5 cut(s) | 386, 909, 1061, 1184, 1602 |
| BlsI | GCNGC | 5 cut(s) | 387, 910, 1062, 1185, 1603 |
| Bme1390I | CCNGG | 1 cut(s) | 1035 |
| Bme18I | GGWCC | 3 cut(s) | 366, 1245, 1640 |
| BmeT110I | CYCGRG | 1 cut(s) | 825 |
| BmgT120I | GGNCC | 3 cut(s) | 366, 1245, 1640 |
| BmiI | GGNNCC | 5 cut(s) | 504, 1040, 1404, 1641, 1642 |
| BmrFI | CCNGG | 1 cut(s) | 1035 |
| BmsI | GCATC | 7 cut(s) | 4, 369, 481, 691, 1126, 1197, 1294 |
| BpiI | GAAGAC | 1 cut(s) | 1002 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1015, 1047 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1752 |
| Bsa29I | ATCGAT | 2 cut(s) | 574, 782 |
| BsaAI | YACGTR | 1 cut(s) | 441 |
| BsaHI | GRCGYC | 3 cut(s) | 26, 419, 728 |
| BsaI | GGTCTC | 1 cut(s) | 847 |
| BsaJI | CCNNGG | 1 cut(s) | 1034 |
| BsaWI | WCCGGW | 2 cut(s) | 144, 739 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 286, 316, 608, 638 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 121, 144, 238, 722, 1366, 1380 |
| BseAI | TCCGGA | 2 cut(s) | 144, 739 |
| BseBI | CCWGG | 1 cut(s) | 1035 |
| BseCI | ATCGAT | 2 cut(s) | 574, 782 |
| BseDI | CCNNGG | 1 cut(s) | 1034 |
| BseGI | GGATG | 9 cut(s) | 110, 141, 434, 592, 951, 1016, 1147, 1496, 1675 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 121, 144, 238, 722, 1366, 1380 |
| BseMII | CTCAG | 3 cut(s) | 181, 930, 1743 |
| BseRI | GAGGAG | 2 cut(s) | 56, 1081 |
| BseSI | GKGCMC | 1 cut(s) | 232 |
| BseXI | GCAGC | 4 cut(s) | 372, 920, 1072, 1613 |
| BsgI | GTGCAG | 2 cut(s) | 700, 1213 |
| Bsh1236I | CGCG | 1 cut(s) | 244 |
| BshFI | GGCC | 4 cut(s) | 174, 277, 1450, 1676 |
| BshVI | ATCGAT | 2 cut(s) | 574, 782 |
| BsiHKAI | GWGCWC | 1 cut(s) | 598 |
| BsiHKCI | CYCGRG | 1 cut(s) | 825 |
| BsiSI | CCGG | 3 cut(s) | 145, 740, 1447 |
| BslFI | GGGAC | 2 cut(s) | 739, 1653 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 121, 144, 238, 722, 1366, 1380 |
| BsmAI | GTCTC | 3 cut(s) | 847, 935, 1706 |
| BsmFI | GGGAC | 2 cut(s) | 739, 1653 |
| BsmI | GAATGC | 1 cut(s) | 1075 |
| BsnI | GGCC | 4 cut(s) | 174, 277, 1450, 1676 |
| Bso31I | GGTCTC | 1 cut(s) | 847 |
| BsoBI | CYCGRG | 1 cut(s) | 825 |
| Bsp1286I | GDGCHC | 4 cut(s) | 232, 598, 1405, 1528 |
| Bsp13I | TCCGGA | 2 cut(s) | 144, 739 |
| Bsp1407I | TGTACA | 1 cut(s) | 670 |
| BspACI | CCGC | 2 cut(s) | 860, 1184 |
| BspANI | GGCC | 4 cut(s) | 174, 277, 1450, 1676 |
| BspCNI | CTCAG | 3 cut(s) | 180, 931, 1744 |
| BspDI | ATCGAT | 2 cut(s) | 574, 782 |
| BspEI | TCCGGA | 2 cut(s) | 144, 739 |
| BspFNI | CGCG | 1 cut(s) | 244 |
| BspLI | GGNNCC | 5 cut(s) | 504, 1040, 1404, 1641, 1642 |
| BspMAI | CTGCAG | 3 cut(s) | 1062, 1082, 1379 |
| BspMI | ACCTGC | 1 cut(s) | 1382 |
| BspPI | GGATC | 4 cut(s) | 489, 497, 510, 551 |
| BspTNI | GGTCTC | 1 cut(s) | 847 |
| BsrGI | TGTACA | 1 cut(s) | 670 |
| BssECI | CCNNGG | 1 cut(s) | 1034 |
| BssNI | GRCGYC | 3 cut(s) | 26, 419, 728 |
| BssSI | CACGAG | 1 cut(s) | 1338 |
| Bst2BI | CACGAG | 1 cut(s) | 1338 |
| Bst2UI | CCWGG | 1 cut(s) | 1035 |
| Bst4CI | ACNGT | 4 cut(s) | 298, 946, 1253, 1392 |
| BstACI | GRCGYC | 3 cut(s) | 26, 419, 728 |
| BstAUI | TGTACA | 1 cut(s) | 670 |
| BstBAI | YACGTR | 1 cut(s) | 441 |
| BstC8I | GCNNGC | 2 cut(s) | 542, 1141 |
| BstDEI | CTNAG | 6 cut(s) | 167, 222, 939, 1721, 1752, 1826 |
| BstEII | GGTNACC | 1 cut(s) | 1369 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1378 |
| BstF5I | GGATG | 9 cut(s) | 110, 141, 434, 592, 951, 1016, 1147, 1496, 1675 |
| BstFNI | CGCG | 1 cut(s) | 244 |
| BstHHI | GCGC | 3 cut(s) | 244, 405, 706 |
| BstMAI | GTCTC | 3 cut(s) | 847, 935, 1706 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 23, 997, 1086, 1456, 1601, 1660, 1682 |
| BstNI | CCWGG | 1 cut(s) | 1035 |
| BstNSI | RCATGY | 4 cut(s) | 544, 1009, 1143, 1426 |
| BstPI | GGTNACC | 1 cut(s) | 1369 |
| BstSCI | CCNGG | 1 cut(s) | 1033 |
| BstSFI | CTRYAG | 3 cut(s) | 1058, 1078, 1375 |
| BstSLI | GKGCMC | 1 cut(s) | 232 |
| BstUI | CGCG | 1 cut(s) | 244 |
| BstV1I | GCAGC | 4 cut(s) | 372, 920, 1072, 1613 |
| BstV2I | GAAGAC | 1 cut(s) | 1002 |
| BstX2I | RGATCY | 4 cut(s) | 481, 502, 821, 833 |
| BstYI | RGATCY | 4 cut(s) | 481, 502, 821, 833 |
| Bsu15I | ATCGAT | 2 cut(s) | 574, 782 |
| BsuRI | GGCC | 4 cut(s) | 174, 277, 1450, 1676 |
| BsuTUI | ATCGAT | 2 cut(s) | 574, 782 |
| BtsCI | GGATG | 9 cut(s) | 110, 141, 434, 592, 951, 1016, 1147, 1496, 1675 |
| BtsI | GCAGTG | 2 cut(s) | 1087, 1201 |
| BtsIMutI | CAGTG | 4 cut(s) | 585, 1087, 1201, 1710 |
| BveI | ACCTGC | 1 cut(s) | 1382 |
| Cac8I | GCNNGC | 2 cut(s) | 542, 1141 |
| CaiI | CAGNNNCTG | 2 cut(s) | 875, 1057 |
| CfoI | GCGC | 3 cut(s) | 244, 405, 706 |
| Cfr13I | GGNCC | 3 cut(s) | 366, 1245, 1640 |
| ClaI | ATCGAT | 2 cut(s) | 574, 782 |
| CseI | GACGC | 2 cut(s) | 15, 427 |
| Csp6I | GTAC | 5 cut(s) | 442, 671, 686, 1265, 1796 |
| CviQI | GTAC | 5 cut(s) | 442, 671, 686, 1265, 1796 |
| DdeI | CTNAG | 6 cut(s) | 167, 222, 939, 1721, 1752, 1826 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1390 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1390 |
| EaeI | YGGCCR | 1 cut(s) | 275 |
| Eco147I | AGGCCT | 1 cut(s) | 174 |
| Eco24I | GRGCYC | 2 cut(s) | 1405, 1528 |
| Eco31I | GGTCTC | 1 cut(s) | 847 |
| Eco47I | GGWCC | 3 cut(s) | 366, 1245, 1640 |
| Eco57I | CTGAAG | 3 cut(s) | 888, 1281, 1393 |
| Eco88I | CYCGRG | 1 cut(s) | 825 |
| Eco91I | GGTNACC | 1 cut(s) | 1369 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1378 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1640 |
| EcoO65I | GGTNACC | 1 cut(s) | 1369 |
| EcoRI | GAATTC | 1 cut(s) | 1803 |
| EcoRII | CCWGG | 1 cut(s) | 1033 |
| EcoT22I | ATGCAT | 3 cut(s) | 496, 1141, 1309 |
| EcoT38I | GRGCYC | 2 cut(s) | 1405, 1528 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 38, 70, 1590, 1622 |
| FaqI | GGGAC | 2 cut(s) | 739, 1653 |
| FbaI | TGATCA | 1 cut(s) | 1351 |
| Fnu4HI | GCNGC | 5 cut(s) | 386, 909, 1061, 1184, 1602 |
| FokI | GGATG | 9 cut(s) | 97, 128, 421, 599, 938, 1003, 1134, 1503, 1682 |
| FriOI | GRGCYC | 2 cut(s) | 1405, 1528 |
| Fsp4HI | GCNGC | 5 cut(s) | 386, 909, 1061, 1184, 1602 |
| FspBI | CTAG | 3 cut(s) | 197, 569, 711 |
| GlaI | GCGC | 3 cut(s) | 243, 404, 705 |
| GluI | GCNGC | 5 cut(s) | 386, 909, 1061, 1184, 1602 |
| HaeIII | GGCC | 4 cut(s) | 174, 277, 1450, 1676 |
| HapII | CCGG | 3 cut(s) | 145, 740, 1447 |
| HgaI | GACGC | 2 cut(s) | 15, 427 |
| HhaI | GCGC | 3 cut(s) | 244, 405, 706 |
| Hin1I | GRCGYC | 3 cut(s) | 26, 419, 728 |
| Hin6I | GCGC | 3 cut(s) | 242, 403, 704 |
| HinP1I | GCGC | 3 cut(s) | 242, 403, 704 |
| HincII | GTYRAC | 2 cut(s) | 260, 867 |
| HindII | GTYRAC | 2 cut(s) | 260, 867 |
| HinfI | GANTC | 8 cut(s) | 37, 155, 256, 318, 623, 899, 1384, 1413 |
| HpaII | CCGG | 3 cut(s) | 145, 740, 1447 |
| HphI | GGTGA | 4 cut(s) | 49, 1184, 1363, 1801 |
| Hpy166II | GTNNAC | 4 cut(s) | 248, 260, 867, 1576 |
| Hpy188I | TCNGA | 7 cut(s) | 154, 170, 940, 956, 1053, 1351, 1412 |
| Hpy188III | TCNNGA | 8 cut(s) | 122, 145, 526, 740, 825, 1151, 1417, 1607 |
| Hpy8I | GTNNAC | 4 cut(s) | 248, 260, 867, 1576 |
| HpyAV | CCTTC | 7 cut(s) | 64, 122, 232, 1163, 1291, 1374, 1417 |
| HpyCH4III | ACNGT | 4 cut(s) | 298, 946, 1253, 1392 |
| HpyCH4IV | ACGT | 5 cut(s) | 331, 440, 728, 1267, 1697 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 23, 997, 1086, 1456, 1601, 1660, 1682 |
| HpyF3I | CTNAG | 6 cut(s) | 167, 222, 939, 1721, 1752, 1826 |
| HpySE526I | ACGT | 5 cut(s) | 331, 440, 728, 1267, 1697 |
| Hsp92I | GRCGYC | 3 cut(s) | 26, 419, 728 |
| HspAI | GCGC | 3 cut(s) | 242, 403, 704 |
| KflI | GGGWCCC | 1 cut(s) | 1640 |
| Kpn2I | TCCGGA | 2 cut(s) | 144, 739 |
| Ksp22I | TGATCA | 1 cut(s) | 1351 |
| LmnI | GCTCC | 4 cut(s) | 601, 916, 1094, 1408 |
| Lsp1109I | GCAGC | 4 cut(s) | 372, 920, 1072, 1613 |
| LweI | GCATC | 7 cut(s) | 4, 369, 481, 691, 1126, 1197, 1294 |
| MaeI | CTAG | 3 cut(s) | 197, 569, 711 |
| MaeII | ACGT | 5 cut(s) | 331, 440, 728, 1267, 1697 |
| MaeIII | GTNAC | 5 cut(s) | 210, 327, 1082, 1369, 1808 |
| MboII | GAAGA | 8 cut(s) | 137, 150, 313, 843, 894, 1002, 1005, 1178 |
| MfeI | CAATTG | 3 cut(s) | 96, 600, 689 |
| MflI | RGATCY | 4 cut(s) | 481, 502, 821, 833 |
| MhlI | GDGCHC | 4 cut(s) | 232, 598, 1405, 1528 |
| MlsI | TGGCCA | 1 cut(s) | 277 |
| MluNI | TGGCCA | 1 cut(s) | 277 |
| MlyI | GAGTC | 3 cut(s) | 265, 632, 1378 |
| Mox20I | TGGCCA | 1 cut(s) | 277 |
| Mph1103I | ATGCAT | 3 cut(s) | 496, 1141, 1309 |
| MroI | TCCGGA | 2 cut(s) | 144, 739 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1768 |
| MscI | TGGCCA | 1 cut(s) | 277 |
| MseI | TTAA | 5 cut(s) | 747, 840, 924, 1212, 1589 |
| Msp20I | TGGCCA | 1 cut(s) | 277 |
| MspA1I | CMGCKG | 1 cut(s) | 862 |
| MspI | CCGG | 3 cut(s) | 145, 740, 1447 |
| MspR9I | CCNGG | 1 cut(s) | 1035 |
| MunI | CAATTG | 3 cut(s) | 96, 600, 689 |
| Mva1269I | GAATGC | 1 cut(s) | 1075 |
| MvaI | CCWGG | 1 cut(s) | 1035 |
| MvnI | CGCG | 1 cut(s) | 244 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 23, 997, 1086, 1456, 1601, 1660, 1682 |
| NlaIV | GGNNCC | 5 cut(s) | 504, 1040, 1404, 1641, 1642 |
| NmuCI | GTSAC | 3 cut(s) | 210, 1082, 1369 |
| NsiI | ATGCAT | 3 cut(s) | 496, 1141, 1309 |
| NspI | RCATGY | 4 cut(s) | 544, 1009, 1143, 1426 |
| PaeI | GCATGC | 2 cut(s) | 544, 1143 |
| PaeR7I | CTCGAG | 1 cut(s) | 825 |
| PaqCI | CACCTGC | 1 cut(s) | 1382 |
| PceI | AGGCCT | 1 cut(s) | 174 |
| PctI | GAATGC | 1 cut(s) | 1075 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1768 |
| PfeI | GAWTC | 5 cut(s) | 37, 155, 318, 899, 1413 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 722 |
| PkrI | GCNGC | 5 cut(s) | 387, 910, 1062, 1185, 1603 |
| PleI | GAGTC | 3 cut(s) | 264, 631, 1378 |
| PpsI | GAGTC | 3 cut(s) | 264, 631, 1378 |
| Ppu21I | YACGTR | 1 cut(s) | 441 |
| PpuMI | RGGWCCY | 1 cut(s) | 1640 |
| PshBI | ATTAAT | 2 cut(s) | 747, 924 |
| PsiI | TTATAA | 1 cut(s) | 770 |
| Psp5II | RGGWCCY | 1 cut(s) | 1640 |
| Psp6I | CCWGG | 1 cut(s) | 1033 |
| PspEI | GGTNACC | 1 cut(s) | 1369 |
| PspGI | CCWGG | 1 cut(s) | 1033 |
| PspN4I | GGNNCC | 5 cut(s) | 504, 1040, 1404, 1641, 1642 |
| PspPI | GGNCC | 3 cut(s) | 366, 1245, 1640 |
| PspPPI | RGGWCCY | 1 cut(s) | 1640 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 69, 101 |
| PstI | CTGCAG | 3 cut(s) | 1062, 1082, 1379 |
| PstNI | CAGNNNCTG | 2 cut(s) | 875, 1057 |
| PsuI | RGATCY | 4 cut(s) | 481, 502, 821, 833 |
| RsaI | GTAC | 5 cut(s) | 443, 672, 687, 1266, 1797 |
| RsaNI | GTAC | 5 cut(s) | 442, 671, 686, 1265, 1796 |
| SaqAI | TTAA | 5 cut(s) | 747, 840, 924, 1212, 1589 |
| SatI | GCNGC | 5 cut(s) | 386, 909, 1061, 1184, 1602 |
| Sau96I | GGNCC | 3 cut(s) | 366, 1245, 1640 |
| SchI | GAGTC | 3 cut(s) | 265, 632, 1378 |
| ScrFI | CCNGG | 1 cut(s) | 1035 |
| SduI | GDGCHC | 4 cut(s) | 232, 598, 1405, 1528 |
| SfaNI | GCATC | 7 cut(s) | 4, 369, 481, 691, 1126, 1197, 1294 |
| SfcI | CTRYAG | 3 cut(s) | 1058, 1078, 1375 |
| Sfr274I | CTCGAG | 1 cut(s) | 825 |
| SinI | GGWCC | 3 cut(s) | 366, 1245, 1640 |
| SlaI | CTCGAG | 1 cut(s) | 825 |
| SmlI | CTYRAG | 1 cut(s) | 825 |
| SmoI | CTYRAG | 1 cut(s) | 825 |
| SphI | GCATGC | 2 cut(s) | 544, 1143 |
| SseBI | AGGCCT | 1 cut(s) | 174 |
| SsiI | CCGC | 2 cut(s) | 860, 1184 |
| SspMI | CTAG | 3 cut(s) | 197, 569, 711 |
| StuI | AGGCCT | 1 cut(s) | 174 |
| StyD4I | CCNGG | 1 cut(s) | 1033 |
| TaaI | ACNGT | 4 cut(s) | 298, 946, 1253, 1392 |
| TaiI | ACGT | 5 cut(s) | 334, 443, 731, 1270, 1700 |
| TaqI | TCGA | 4 cut(s) | 574, 782, 790, 826 |
| TatI | WGTACW | 2 cut(s) | 670, 1795 |
| TauI | GCSGC | 1 cut(s) | 1186 |
| TfiI | GAWTC | 5 cut(s) | 37, 155, 318, 899, 1413 |
| Tru1I | TTAA | 5 cut(s) | 747, 840, 924, 1212, 1589 |
| Tru9I | TTAA | 5 cut(s) | 747, 840, 924, 1212, 1589 |
| TscAI | CASTG | 4 cut(s) | 585, 1087, 1201, 1710 |
| TseFI | GTSAC | 3 cut(s) | 210, 1082, 1369 |
| TseI | GCWGC | 4 cut(s) | 385, 908, 1060, 1601 |
| Tsp45I | GTSAC | 3 cut(s) | 210, 1082, 1369 |
| TspDTI | ATGAA | 5 cut(s) | 313, 397, 441, 1005, 1500 |
| TspGWI | ACGGA | 3 cut(s) | 294, 944, 1503 |
| TspRI | CASTG | 4 cut(s) | 585, 1087, 1201, 1710 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 722 |
| VpaK11BI | GGWCC | 3 cut(s) | 366, 1245, 1640 |
| VspI | ATTAAT | 2 cut(s) | 747, 924 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1378 |
| XapI | RAATTY | 5 cut(s) | 448, 1047, 1175, 1532, 1803 |
| XceI | RCATGY | 4 cut(s) | 544, 1009, 1143, 1426 |
| XhoI | CTCGAG | 1 cut(s) | 825 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1768 |
| XspI | CTAG | 3 cut(s) | 197, 569, 711 |
| ZraI | GACGTC | 1 cut(s) | 729 |
| Zsp2I | ATGCAT | 3 cut(s) | 496, 1141, 1309 |