Rmu_sc0013160.1_g000006

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013160.1
OG0000044
Physical Location & Seq
Reverse (-)
28225 .. 31894
3670 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013160.1_g000006.1.cds

Sequence Viewer

Length: 1692 bp
atgcacagccaatggcaacctggcacttctccagccgcacgccgctacacgccaaaaaactggttcgcacgctcctgcagggcttgttggcactacgtgacaagtgactgcctcccactccaccaagccggcgcgtctcccctctcctcttctttttgggacagcgtggcaacctgggtcacgaactcagtcaccctcctacctgagcttgtgacctgggccgcccactgtgctcttgccccggatctggtggaagctgcaatattcacttcggtgagcactgctacgcacgctcgccctcgggttagtaggaaaccccatcctcaatgggtgggtagcaaatcaaacatgaatttagcaaatggtatcggggttgcaccagttgcaccttgcaaagttgctccagtacgttgcacttgcaaaggttgccgcaccccatggatcaagatactcctacatctcatcgtgcgacctggcatgggcgctcctcctacatcacctaccatcgtcctaattcttacccaaatgcaaccactccttccatgcagtgatggtatagttatgtcagggattggggccgtctctcaccaggccatcgccatgggtgagcctcctccagcctgccgtggagttttcttcagccattctttgacacgagatctccttcttctacacttgaacataaaattcacaaggcaaagaccttgttgcaggttaagaggaaacccaagttcctatcagccaactaccagagccaacaattcgtggagacacggtttagtgggcaccccgttgcaattggatacggcaactaaagaacaaagatatggatattatgctagggtgttggtggatgttgatctgttgggtgctcttcctacgtccattatggttgaaagagaacacctctgttttctagtaggtatcgagtacgaaaacctgcctcctcagtgctctcactgtggtttgatagggcatgaaaggaaaatttgcaggcaactaaagtccaaggaaggtcctgtgaaacgtaaagaggctcccatccaaagtgatgttgttgtggctcttgtaaatactgttttggaggaagcagcggctgaggttatggaggaacaggctcaaagggtaatggaggagaataattctaaccttgcctctaatgatgcatctgttgcttcggacacagatattagtgatttacctacccgtacttgggggaatatttttgaggaggagagggttgaaggtttgaacagagaggctccagctagtgctccaccaagccttggtccacctcctggttttgtcaaatctaatgtggcttcagaaattgatgcggttgcaagatttgttaatgtcggtaagtctttactaggggatcctaaaccttttcgtttccaatctatgtggcttctccactcttctttcacgaagttggtggcgaattgttggtcgaccaccagaccagctggttgtcccatgtatgtgacgctacaaaaattaaaggccttgaagttatgccttaagcaatggaacaacacggtatttgggaatgttcatagaaacttggagttggcccgtgctaagttgactgccattcaacaagatattgcttctaatggttctactgatatcaattttgaggctgaagttcttgcaaaggccgatgttcttaatgcggttaagcattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

563

Amino Acids

61.68

Weight (kDa)

8.92

Isoelectric Point (pI)

39.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000044)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07760 AT5G28823
fragaria_vesca FvH4_1g13572 FvH4_2g03281 FvH4_2g04691 FvH4_2g08332 FvH4_2g08333 FvH4_2g15313 FvH4_2g26101 FvH4_2g29541 FvH4_3g06911 FvH4_3g34351 FvH4_3g43733 FvH4_4g02432 FvH4_4g05601 FvH4_4g08213 FvH4_4g09961 FvH4_4g10131 FvH4_4g20001 FvH4_4g20002 FvH4_5g01051 FvH4_5g01401 FvH4_5g27943 FvH4_6g09220 FvH4_6g17383 FvH4_6g35491 FvH4_6g46421 FvH4_7g04151 FvH4_7g13962 FvH4_7g18611 FvH4_7g19491 FvH4_7g19511 FvH4_7g26562
malus_domestica MD06G1221600.v1.1
pyrus_communis pycom10g21150
rosa_chinensis RchiOBHm_Chr1g0337571 RchiOBHm_Chr2g0168771 RchiOBHm_Chr3g0453631 RchiOBHm_Chr6g0278581
rosa_laevigata RLG00000001899 RLG00000001925 RLG00000002026 RLG00000003410 RLG00000003767 RLG00000004304 RLG00000004473 RLG00000004677 RLG00000006856 RLG00000007994 RLG00000009888 RLG00000011627 RLG00000012174 RLG00000012217 RLG00000013118 RLG00000013736 RLG00000014194 RLG00000014251 RLG00000015011 RLG00000015057 RLG00000015235 RLG00000017416 RLG00000018052 RLG00000018537 RLG00000019968 RLG00000020096 RLG00000020263 RLG00000022606 RLG00000023119 RLG00000028111 RLG00000029686 RLG00000030126 RLG00000031124 RLG00000031236 RLG00000032766 RLG00000033171 RLG00000033548 RLG00000033987 RLG00000034062 RLG00000035115 RLG00000035863
rosa_multiflora Rmu_co8036712.1_g000001 Rmu_co8080248.1_g000001 Rmu_co8208334.1_g000001 Rmu_co8253451.1_g000001 Rmu_co8393241.1_g000001 Rmu_co8522225.1_g000005 Rmu_sc0000060.1_g000030 Rmu_sc0000060.1_g000031 Rmu_sc0000060.1_g000032 Rmu_sc0000090.1_g000008 Rmu_sc0000149.1_g000051 Rmu_sc0000149.1_g000058 Rmu_sc0000309.1_g000050 Rmu_sc0000370.1_g000022 Rmu_sc0000370.1_g000023 Rmu_sc0000370.1_g000024 Rmu_sc0000418.1_g000018 Rmu_sc0000427.1_g000014 Rmu_sc0000427.1_g000015 Rmu_sc0000434.1_g000008 Rmu_sc0000487.1_g000038 Rmu_sc0000487.1_g000039 Rmu_sc0000569.1_g000029 Rmu_sc0000580.1_g000097 Rmu_sc0000595.1_g000068 Rmu_sc0000607.1_g000027 Rmu_sc0000738.1_g000004 Rmu_sc0000758.1_g000001 Rmu_sc0000758.1_g000002 Rmu_sc0000870.1_g000019 Rmu_sc0000924.1_g000040 Rmu_sc0000924.1_g000041 Rmu_sc0000999.1_g000037 Rmu_sc0001001.1_g000001 Rmu_sc0001010.1_g000080 Rmu_sc0001075.1_g000041 Rmu_sc0001097.1_g000016 Rmu_sc0001173.1_g000020 Rmu_sc0001258.1_g000010 Rmu_sc0001425.1_g000031 Rmu_sc0001493.1_g000020 Rmu_sc0001493.1_g000021 Rmu_sc0001644.1_g000024 Rmu_sc0001648.1_g000039 Rmu_sc0001662.1_g000002 Rmu_sc0001849.1_g000046 Rmu_sc0001851.1_g000038 Rmu_sc0001861.1_g000006 Rmu_sc0001899.1_g000008 Rmu_sc0002231.1_g000023 Rmu_sc0002393.1_g000012 Rmu_sc0002515.1_g000010 Rmu_sc0002551.1_g000013 Rmu_sc0002680.1_g000029 Rmu_sc0002700.1_g000030 Rmu_sc0002700.1_g000031 Rmu_sc0002709.1_g000035 Rmu_sc0002779.1_g000017 Rmu_sc0003267.1_g000040 Rmu_sc0003306.1_g000009 Rmu_sc0003338.1_g000014 Rmu_sc0003522.1_g000038 Rmu_sc0003522.1_g000039 Rmu_sc0003653.1_g000031 Rmu_sc0003901.1_g000003 Rmu_sc0003920.1_g000009 Rmu_sc0004014.1_g000009 Rmu_sc0004016.1_g000013 Rmu_sc0004031.1_g000002 Rmu_sc0004106.1_g000001 Rmu_sc0004432.1_g000004 Rmu_sc0004481.1_g000020 Rmu_sc0004874.1_g000005 Rmu_sc0004928.1_g000005 Rmu_sc0005065.1_g000053 Rmu_sc0005091.1_g000005 Rmu_sc0005217.1_g000015 Rmu_sc0005242.1_g000002 Rmu_sc0005300.1_g000011 Rmu_sc0005400.1_g000004 Rmu_sc0005486.1_g000007 Rmu_sc0005527.1_g000015 Rmu_sc0006059.1_g000021 Rmu_sc0006087.1_g000004 Rmu_sc0006184.1_g000006 Rmu_sc0006184.1_g000007 Rmu_sc0006578.1_g000006 Rmu_sc0006730.1_g000010 Rmu_sc0006736.1_g000030 Rmu_sc0006736.1_g000033 Rmu_sc0007333.1_g000018 Rmu_sc0007856.1_g000010 Rmu_sc0008231.1_g000003 Rmu_sc0009862.1_g000012 Rmu_sc0010547.1_g000001 Rmu_sc0010547.1_g000003 Rmu_sc0010632.1_g000012 Rmu_sc0010747.1_g000008 Rmu_sc0011075.1_g000009 Rmu_sc0011565.1_g000004 Rmu_sc0011641.1_g000003 Rmu_sc0013102.1_g000013 Rmu_sc0013160.1_g000006 Rmu_sc0014846.1_g000004 Rmu_sc0017037.1_g000003 Rmu_sc0018203.1_g000001 Rmu_sc0018204.1_g000001 Rmu_sc0018348.1_g000001 Rmu_sc0019354.1_g000002 Rmu_sc0021630.1_g000002 Rmu_sc0022987.1_g000002 Rmu_sc0024469.1_g000005 Rmu_sc0033519.1_g000001 Rmu_sc0033519.1_g000002 Rmu_sc0033519.1_g000003 Rmu_sc0042775.1_g000001 Rmu_ssc0000110.1_g000003 Rmu_ssc0000110.1_g000004 Rmu_ssc0000126.1_g000068 Rmu_ssc0000200.1_g000007 Rmu_ssc0000295.1_g000003 Rmu_ssc0000295.1_g000004 Rmu_ssc0000299.1_g000010 Rmu_ssc0000308.1_g000024 Rmu_ssc0000339.1_g000006 Rmu_ssc0000385.1_g000012 Rmu_ssc0000409.1_g000004 Rmu_ssc0000421.1_g000004
rosa_roxburghii Rroxscaffold_156G00440360 Rroxscaffold_166G00440800 Rroxscaffold_1G00039040 Rroxscaffold_1G00039050 Rroxscaffold_1G00073950 Rroxscaffold_2G00091710 Rroxscaffold_2G00120050 Rroxscaffold_2G00122590 Rroxscaffold_3G00219700 Rroxscaffold_3G00264140 Rroxscaffold_4G00290600 Rroxscaffold_4G00323610 Rroxscaffold_4G00328460 Rroxscaffold_5G00343440 Rroxscaffold_5G00343570 Rroxscaffold_5G00378540 Rroxscaffold_5G00385090 Rroxscaffold_7G00169130 Rroxscaffold_7G00216420
rosa_rugosa Rorug01G0065800 Rorug01G0073500 Rorug01G0091700 Rorug01G0096500 Rorug01G0204700.1 Rorug01G0249100 Rorug01G0333800 Rorug01G0333900 Rorug01G0339500 Rorug01G0431300 Rorug02G0085400 Rorug02G0117500 Rorug02G0130900 Rorug02G0178800 Rorug02G0226700 Rorug02G0336300 Rorug02G0338700 Rorug02G0351400 Rorug02G0459900 Rorug03G0187000 Rorug03G0223700 Rorug03G0291300 Rorug03G0291300 Rorug03G0311100 Rorug03G0316900 Rorug03G0346000 Rorug04G0014500 Rorug04G0014600 Rorug04G0124100 Rorug04G0136500 Rorug04G0302000 Rorug04G0338100 Rorug04G0338200 Rorug04G0413100 Rorug05G0182200 Rorug05G0226500 Rorug05G0273300 Rorug05G0292200 Rorug05G0292200 Rorug05G0392500 Rorug05G0394500 Rorug05G0394600 Rorug05G0505600.1 Rorug06G0351400 Rorug06G0393400 Rorug06G0393600 Rorug06G0470000 Rorug07G0063100 Rorug07G0086800 Rorug07G0109200 Rorug07G0236100
rosa_samantha Rh1AG010800 Rh1AG011100 Rh1AG064900 Rh1AG088000 Rh1AG207100 Rh1AG262000 Rh1AG300800 Rh1BG043000 Rh1BG144600 Rh1BG180700 Rh1BG180800 Rh1BG328800 Rh1BG399400 Rh1CG041400 Rh1CG047300 Rh1CG379700 Rh1DG036500 Rh1DG083000 Rh1DG210700 Rh1DG210800 Rh1DG231100 Rh2AG007900 Rh2AG055500 Rh2AG339100 Rh2AG368100 Rh2BG243300 Rh2BG258900 Rh2BG292000 Rh2BG333500 Rh2BG387300 Rh2BG612800 Rh2BG619100 Rh2CG026500 Rh2CG163600 Rh2CG535700 Rh2DG186400 Rh2DG235000 Rh2DG314500 Rh2DG388500 Rh2DG391400 Rh2DG496900 Rh2DG526700 Rh2DG570700 Rh3AG330700 Rh3BG266900 Rh3CG236000 Rh3CG340400 Rh3DG090000 Rh3DG278400 Rh3DG297600 Rh3DG362600 Rh4AG001300 Rh4AG023300 Rh4AG097100 Rh4AG427000 Rh4BG029400 Rh4BG032400 Rh4BG086000 Rh4BG249200 Rh4CG001900 Rh4CG040600 Rh4CG093000 Rh4CG106300 Rh4CG113200 Rh4CG113900 Rh4DG002300 Rh4DG144400 Rh4DG234200 Rh5AG043700 Rh5AG084900 Rh5AG161500 Rh5AG409000 Rh5AG457200 Rh5AG457900 Rh5AG473700 Rh5AG520600 Rh5BG042100 Rh5BG124100 Rh5BG323500 Rh5BG417200 Rh5BG443700 Rh5BG451500 Rh5BG464900 Rh5BG470400 Rh5BG522500 Rh5CG068800 Rh5CG178300 Rh5CG231000 Rh5CG258600 Rh5CG394500 Rh5CG473700 Rh5DG164700 Rh5DG235400 Rh5DG261300 Rh5DG304900 Rh5DG334500 Rh5DG424300 Rh5DG458400 Rh5DG478600 Rh5DG552300 Rh5DG552700 Rh6AG037000 Rh6AG042100 Rh6AG255500 Rh6AG283400 Rh6AG291800 Rh6BG049600 Rh6BG080700 Rh6BG114600 Rh6BG128900 Rh6BG352500 Rh6CG052400 Rh6CG112900 Rh6CG113000 Rh6CG131300 Rh6CG157700 Rh6CG243200 Rh6CG254100 Rh6CG275700 Rh6CG299700 Rh6CG309100 Rh6CG317600 Rh6CG342600 Rh6CG471900 Rh6DG038200 Rh6DG102300 Rh6DG114400 Rh6DG225900 Rh6DG292900 Rh6DG320700 Rh6DG512800 Rh7AG217700 Rh7AG313900 Rh7AG446000 Rh7AG472600 Rh7BG223100 Rh7BG349900 Rh7BG352000 Rh7CG160200 Rh7CG233900 Rh7CG242700 Rh7CG273900 Rh7CG306400 Rh7CG322200 Rh7DG053800 Rh7DG077800 Rh7DG227700 Rh7DG404800
rosa_wichuraiana Rw0G003990 Rw2G022110 Rw2G024890 Rw6G005700 Rw7G008770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 702, 948
AccB1I GGYRCC 1 cut(s) 785
AccB7I CCANNNNNTGG 2 cut(s) 1286, 1298
AccI GTMKAC 1 cut(s) 1454
AccII CGCG 1 cut(s) 134
AciI CCGC 7 cut(s) 36, 43, 222, 430, 1094, 1337, 1679
AclWI GGATC 4 cut(s) 252, 449, 1373, 1386
AcsI RAATTY 3 cut(s) 352, 686, 987
AcuI CTGAAG 3 cut(s) 622, 1308, 1668
AdeI CACNNNGTG 1 cut(s) 97
AfaI GTAC 3 cut(s) 408, 932, 1210
AfiI CCNNNNNNNGG 6 cut(s) 247, 479, 1212, 1213, 1286, 1298
AflII CTTAAG 1 cut(s) 1523
AgsI TTSAA 6 cut(s) 679, 896, 1244, 1252, 1513, 1601
AjnI CCWGG 6 cut(s) 19, 173, 215, 472, 588, 1297
AleI CACNNNNGTG 1 cut(s) 272
AluBI AGCT 4 cut(s) 208, 257, 1268, 1469
AluI AGCT 4 cut(s) 208, 257, 1268, 1469
Alw21I GWGCWC 5 cut(s) 235, 281, 874, 956, 1276
Alw26I GTCTC 3 cut(s) 141, 586, 763
AlwI GGATC 4 cut(s) 252, 449, 1373, 1386
AlwNI CAGNNNCTG 1 cut(s) 1097
Ama87I CYCGRG 1 cut(s) 300
AoxI GGCC 6 cut(s) 219, 576, 591, 1506, 1575, 1662
ApeKI GCWGC 2 cut(s) 257, 1091
ApoI RAATTY 3 cut(s) 352, 686, 987
ArsI GACNNNNNNTTYG 2 cut(s) 1436, 1468
AspLEI GCGC 2 cut(s) 134, 485
AspS9I GGNCC 5 cut(s) 219, 576, 1016, 1289, 1576
AsuC2I CCSGG 1 cut(s) 242
AsuHPI GGTGA 5 cut(s) 184, 286, 489, 578, 617
AvaI CYCGRG 1 cut(s) 300
AvaII GGWCC 2 cut(s) 1016, 1289
BaeGI GKGCMC 1 cut(s) 788
BamHI GGATCC 1 cut(s) 1378
BanI GGYRCC 1 cut(s) 785
BauI CACGAG 1 cut(s) 654
Bbv12I GWGCWC 5 cut(s) 235, 281, 874, 956, 1276
BbvCI CCTCAGC 1 cut(s) 1098
BbvI GCAGC 2 cut(s) 244, 1103
BccI CCATC 5 cut(s) 327, 512, 545, 602, 1049
BceAI ACGGC 3 cut(s) 563, 609, 822
BciT130I CCWGG 6 cut(s) 21, 175, 217, 474, 590, 1299
BciVI GTATCC 1 cut(s) 796
BcnI CCSGG 1 cut(s) 242
BcoDI GTCTC 3 cut(s) 141, 586, 763
BfaI CTAG 4 cut(s) 840, 917, 1269, 1373
BfmI CTRYAG 1 cut(s) 76
BfoI RGCGCY 1 cut(s) 486
BfrI CTTAAG 1 cut(s) 1523
BfuAI ACCTGC 2 cut(s) 702, 948
BfuI GTATCC 1 cut(s) 796
BglII AGATCT 1 cut(s) 658
BisI GCNGC 7 cut(s) 36, 43, 222, 258, 430, 1092, 1095
BlsI GCNGC 7 cut(s) 37, 44, 223, 259, 431, 1093, 1096
Bme1390I CCNGG 7 cut(s) 21, 175, 217, 242, 474, 590, 1299
Bme18I GGWCC 2 cut(s) 1016, 1289
BmeT110I CYCGRG 1 cut(s) 300
BmgT120I GGNCC 5 cut(s) 219, 576, 1016, 1289, 1576
BmiI GGNNCC 5 cut(s) 577, 787, 1038, 1263, 1380
BmrFI CCNGG 7 cut(s) 21, 175, 217, 242, 474, 590, 1299
BmsI GCATC 3 cut(s) 1153, 1175, 1324
BplI GAGNNNNNCTC 2 cut(s) 891, 923
BpmI CTGGAG 4 cut(s) 15, 387, 600, 1248
Bpu10I CCTNAGC 2 cut(s) 204, 1098
BpuMI CCSGG 1 cut(s) 242
BsaAI YACGTR 1 cut(s) 97
BsaBI GATNNNNATC 1 cut(s) 858
BsaJI CCNNGG 9 cut(s) 174, 216, 240, 299, 437, 600, 625, 1008, 1285
BsaXI ACNNNNNCTCC 4 cut(s) 645, 675, 760, 790
Bsc4I CCNNNNNNNGG 6 cut(s) 247, 479, 1212, 1213, 1286, 1298
Bse118I RCCGGY 1 cut(s) 128
Bse1I ACTGG 3 cut(s) 65, 380, 404
Bse3DI GCAATG 1 cut(s) 1535
Bse8I GATNNNNATC 1 cut(s) 858
BseBI CCWGG 6 cut(s) 21, 175, 217, 474, 590, 1299
BseDI CCNNGG 9 cut(s) 174, 216, 240, 299, 437, 600, 625, 1008, 1285
BseGI GGATG 3 cut(s) 319, 859, 1041
BseJI GATNNNNATC 1 cut(s) 858
BseLI CCNNNNNNNGG 6 cut(s) 247, 479, 1212, 1213, 1286, 1298
BseMI GCAATG 1 cut(s) 1535
BseMII CTCAG 4 cut(s) 195, 201, 962, 1089
BseNI ACTGG 3 cut(s) 65, 380, 404
BseRI GAGGAG 7 cut(s) 136, 477, 603, 936, 1148, 1244, 1247
BseSI GKGCMC 1 cut(s) 788
BseXI GCAGC 2 cut(s) 244, 1103
Bsh1236I CGCG 1 cut(s) 134
BshFI GGCC 6 cut(s) 221, 578, 593, 1508, 1577, 1664
BshNI GGYRCC 1 cut(s) 785
BsiHKAI GWGCWC 5 cut(s) 235, 281, 874, 956, 1276
BsiHKCI CYCGRG 1 cut(s) 300
BsiSI CCGG 2 cut(s) 129, 242
BslFI GGGAC 2 cut(s) 173, 1461
BslI CCNNNNNNNGG 6 cut(s) 247, 479, 1212, 1213, 1286, 1298
BsmAI GTCTC 3 cut(s) 141, 586, 763
BsmBI CGTCTC 2 cut(s) 141, 586
BsmFI GGGAC 2 cut(s) 173, 1461
BsnI GGCC 6 cut(s) 221, 578, 593, 1508, 1577, 1664
BsoBI CYCGRG 1 cut(s) 300
Bsp1286I GDGCHC 6 cut(s) 235, 281, 788, 874, 956, 1276
Bsp143I GATC 5 cut(s) 244, 441, 658, 859, 1378
Bsp19I CCATGG 2 cut(s) 437, 600
BspACI CCGC 7 cut(s) 36, 43, 222, 430, 1094, 1337, 1679
BspANI GGCC 6 cut(s) 221, 578, 593, 1508, 1577, 1664
BspCNI CTCAG 4 cut(s) 196, 200, 961, 1090
BspFNI CGCG 1 cut(s) 134
BspLI GGNNCC 5 cut(s) 577, 787, 1038, 1263, 1380
BspMAI CTGCAG 1 cut(s) 80
BspMI ACCTGC 2 cut(s) 702, 948
BspPI GGATC 4 cut(s) 252, 449, 1373, 1386
BspQI GCTCTTC 1 cut(s) 879
BspT107I GGYRCC 1 cut(s) 785
BspTI CTTAAG 1 cut(s) 1523
BsrDI GCAATG 1 cut(s) 1535
BsrFI RCCGGY 1 cut(s) 128
BsrI ACTGG 3 cut(s) 65, 380, 404
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 9 cut(s) 174, 216, 240, 299, 437, 600, 625, 1008, 1285
BssMI GATC 5 cut(s) 244, 441, 658, 859, 1378
BssSI CACGAG 1 cut(s) 654
BssT1I CCWWGG 4 cut(s) 437, 600, 1008, 1285
Bst2BI CACGAG 1 cut(s) 654
Bst2UI CCWGG 6 cut(s) 21, 175, 217, 474, 590, 1299
Bst4CI ACNGT 5 cut(s) 230, 776, 962, 1078, 1543
Bst6I CTCTTC 3 cut(s) 154, 879, 1426
BstAFI CTTAAG 1 cut(s) 1523
BstAPI GCANNNNNTGC 3 cut(s) 383, 426, 1172
BstBAI YACGTR 1 cut(s) 97
BstC8I GCNNGC 7 cut(s) 40, 70, 130, 291, 295, 622, 995
BstDEI CTNAG 5 cut(s) 187, 204, 948, 1098, 1584
BstDSI CCRYGG 3 cut(s) 437, 600, 625
BstF5I GGATG 3 cut(s) 319, 859, 1041
BstFNI CGCG 1 cut(s) 134
BstH2I RGCGCY 1 cut(s) 486
BstHHI GCGC 2 cut(s) 134, 485
BstKTI GATC 5 cut(s) 247, 444, 661, 862, 1381
BstMAI GTCTC 3 cut(s) 141, 586, 763
BstMBI GATC 5 cut(s) 244, 441, 658, 859, 1378
BstMWI GCNNNNNNNGC 5 cut(s) 230, 290, 383, 426, 1172
BstNI CCWGG 6 cut(s) 21, 175, 217, 474, 590, 1299
BstSCI CCNGG 7 cut(s) 19, 173, 215, 240, 472, 588, 1297
BstSFI CTRYAG 1 cut(s) 76
BstSLI GKGCMC 1 cut(s) 788
BstUI CGCG 1 cut(s) 134
BstV1I GCAGC 2 cut(s) 244, 1103
BstX2I RGATCY 3 cut(s) 244, 658, 1378
BstXI CCANNNNNNTGG 2 cut(s) 60, 601
BstYI RGATCY 3 cut(s) 244, 658, 1378
BsuI GTATCC 1 cut(s) 796
BsuRI GGCC 6 cut(s) 221, 578, 593, 1508, 1577, 1664
BtgI CCRYGG 3 cut(s) 437, 600, 625
BtgZI GCGATG 1 cut(s) 580
BtsCI GGATG 3 cut(s) 319, 859, 1041
BtsI GCAGTG 2 cut(s) 279, 553
BtsIMutI CAGTG 5 cut(s) 226, 279, 553, 956, 958
BveI ACCTGC 2 cut(s) 702, 948
Cac8I GCNNGC 7 cut(s) 40, 70, 130, 291, 295, 622, 995
CaiI CAGNNNCTG 1 cut(s) 1097
CfoI GCGC 2 cut(s) 134, 485
Cfr10I RCCGGY 1 cut(s) 128
Cfr13I GGNCC 5 cut(s) 219, 576, 1016, 1289, 1576
CseI GACGC 2 cut(s) 123, 1498
Csp6I GTAC 3 cut(s) 407, 931, 1209
CspCI CAANNNNNGTGG 2 cut(s) 1388, 1423
CviAII CATG 7 cut(s) 349, 438, 478, 543, 601, 977, 1480
CviQI GTAC 3 cut(s) 407, 931, 1209
DdeI CTNAG 5 cut(s) 187, 204, 948, 1098, 1584
DpnI GATC 5 cut(s) 246, 443, 660, 861, 1380
DpnII GATC 5 cut(s) 244, 441, 658, 859, 1378
DraIII CACNNNGTG 1 cut(s) 97
Eam1104I CTCTTC 3 cut(s) 154, 879, 1426
EarI CTCTTC 3 cut(s) 154, 879, 1426
Eco130I CCWWGG 4 cut(s) 437, 600, 1008, 1285
Eco147I AGGCCT 1 cut(s) 1508
Eco32I GATATC 1 cut(s) 1633
Eco47I GGWCC 2 cut(s) 1016, 1289
Eco57I CTGAAG 3 cut(s) 622, 1308, 1668
Eco88I CYCGRG 1 cut(s) 300
EcoO109I RGGNCCY 1 cut(s) 1016
EcoRII CCWGG 6 cut(s) 19, 173, 215, 472, 588, 1297
EcoRV GATATC 1 cut(s) 1633
EcoT14I CCWWGG 4 cut(s) 437, 600, 1008, 1285
EcoT22I ATGCAT 1 cut(s) 1168
ErhI CCWWGG 4 cut(s) 437, 600, 1008, 1285
Esp3I CGTCTC 2 cut(s) 141, 586
FaeI CATG 7 cut(s) 352, 441, 481, 546, 604, 980, 1483
FaqI GGGAC 2 cut(s) 173, 1461
FatI CATG 7 cut(s) 348, 437, 477, 542, 600, 976, 1479
FblI GTMKAC 1 cut(s) 1454
Fnu4HI GCNGC 7 cut(s) 36, 43, 222, 258, 430, 1092, 1095
FokI GGATG 3 cut(s) 306, 866, 1028
Fsp4HI GCNGC 7 cut(s) 36, 43, 222, 258, 430, 1092, 1095
FspBI CTAG 4 cut(s) 840, 917, 1269, 1373
GlaI GCGC 2 cut(s) 133, 484
GluI GCNGC 7 cut(s) 36, 43, 222, 258, 430, 1092, 1095
GsuI CTGGAG 4 cut(s) 15, 387, 600, 1248
HaeII RGCGCY 1 cut(s) 486
HaeIII GGCC 6 cut(s) 221, 578, 593, 1508, 1577, 1664
HapII CCGG 2 cut(s) 129, 242
HgaI GACGC 2 cut(s) 123, 1498
HhaI GCGC 2 cut(s) 134, 485
Hin1II CATG 7 cut(s) 352, 441, 481, 546, 604, 980, 1483
Hin6I GCGC 2 cut(s) 132, 483
HinP1I GCGC 2 cut(s) 132, 483
HincII GTYRAC 2 cut(s) 1455, 1590
HindII GTYRAC 2 cut(s) 1455, 1590
HpaII CCGG 2 cut(s) 129, 242
HphI GGTGA 5 cut(s) 184, 286, 489, 578, 617
Hpy166II GTNNAC 3 cut(s) 1292, 1455, 1590
Hpy188I TCNGA 2 cut(s) 1180, 1327
Hpy188III TCNNGA 3 cut(s) 181, 445, 1429
Hpy8I GTNNAC 3 cut(s) 1292, 1455, 1590
HpyAV CCTTC 4 cut(s) 548, 674, 1007, 1238
HpyCH4III ACNGT 5 cut(s) 230, 776, 962, 1078, 1543
HpyCH4IV ACGT 4 cut(s) 96, 409, 881, 1027
HpyF10VI GCNNNNNNNGC 5 cut(s) 230, 290, 383, 426, 1172
HpyF3I CTNAG 5 cut(s) 187, 204, 948, 1098, 1584
HpySE526I ACGT 4 cut(s) 96, 409, 881, 1027
Hsp92II CATG 7 cut(s) 352, 441, 481, 546, 604, 980, 1483
HspAI GCGC 2 cut(s) 132, 483
KroI GCCGGC 1 cut(s) 128
KroNI GCCGGC 1 cut(s) 130
Kzo9I GATC 5 cut(s) 244, 441, 658, 859, 1378
LguI GCTCTTC 1 cut(s) 879
LmnI GCTCC 6 cut(s) 77, 406, 490, 1042, 1267, 1279
Lsp1109I GCAGC 2 cut(s) 244, 1103
LweI GCATC 3 cut(s) 1153, 1175, 1324
MaeI CTAG 4 cut(s) 840, 917, 1269, 1373
MaeII ACGT 4 cut(s) 96, 409, 881, 1027
MaeIII GTNAC 6 cut(s) 97, 104, 178, 190, 211, 1486
MalI GATC 5 cut(s) 246, 443, 660, 861, 1380
MboI GATC 5 cut(s) 244, 441, 658, 859, 1378
MboII GAAGA 5 cut(s) 141, 628, 659, 866, 1413
MfeI CAATTG 1 cut(s) 797
MflI RGATCY 3 cut(s) 244, 658, 1378
MhlI GDGCHC 6 cut(s) 235, 281, 788, 874, 956, 1276
Mph1103I ATGCAT 1 cut(s) 1168
MroNI GCCGGC 1 cut(s) 128
MseI TTAA 6 cut(s) 716, 1353, 1502, 1524, 1674, 1683
MslI CAYNNNNRTG 3 cut(s) 272, 599, 1484
MspA1I CMGCKG 2 cut(s) 1094, 1469
MspCI CTTAAG 1 cut(s) 1523
MspI CCGG 2 cut(s) 129, 242
MspR9I CCNGG 7 cut(s) 21, 175, 217, 242, 474, 590, 1299
MunI CAATTG 1 cut(s) 797
MvaI CCWGG 6 cut(s) 21, 175, 217, 474, 590, 1299
MvnI CGCG 1 cut(s) 134
MwoI GCNNNNNNNGC 5 cut(s) 230, 290, 383, 426, 1172
NaeI GCCGGC 1 cut(s) 130
NciI CCSGG 1 cut(s) 242
NcoI CCATGG 2 cut(s) 437, 600
NdeII GATC 5 cut(s) 244, 441, 658, 859, 1378
NgoMIV GCCGGC 1 cut(s) 128
NlaIII CATG 7 cut(s) 352, 441, 481, 546, 604, 980, 1483
NlaIV GGNNCC 5 cut(s) 577, 787, 1038, 1263, 1380
NmuCI GTSAC 6 cut(s) 97, 104, 178, 190, 211, 1486
NsiI ATGCAT 1 cut(s) 1168
OliI CACNNNNGTG 1 cut(s) 272
PceI AGGCCT 1 cut(s) 1508
PciSI GCTCTTC 1 cut(s) 879
PdiI GCCGGC 1 cut(s) 130
PflMI CCANNNNNTGG 2 cut(s) 1286, 1298
PkrI GCNGC 7 cut(s) 37, 44, 223, 259, 431, 1093, 1096
Ppu21I YACGTR 1 cut(s) 97
PpuMI RGGWCCY 1 cut(s) 1016
Psp5II RGGWCCY 1 cut(s) 1016
Psp6I CCWGG 6 cut(s) 19, 173, 215, 472, 588, 1297
PspGI CCWGG 6 cut(s) 19, 173, 215, 472, 588, 1297
PspN4I GGNNCC 5 cut(s) 577, 787, 1038, 1263, 1380
PspPI GGNCC 5 cut(s) 219, 576, 1016, 1289, 1576
PspPPI RGGWCCY 1 cut(s) 1016
PstI CTGCAG 1 cut(s) 80
PstNI CAGNNNCTG 1 cut(s) 1097
PsuI RGATCY 3 cut(s) 244, 658, 1378
PvuII CAGCTG 1 cut(s) 1469
RsaI GTAC 3 cut(s) 408, 932, 1210
RsaNI GTAC 3 cut(s) 407, 931, 1209
RseI CAYNNNNRTG 3 cut(s) 272, 599, 1484
SalI GTCGAC 1 cut(s) 1453
SapI GCTCTTC 1 cut(s) 879
SaqAI TTAA 6 cut(s) 716, 1353, 1502, 1524, 1674, 1683
SatI GCNGC 7 cut(s) 36, 43, 222, 258, 430, 1092, 1095
Sau3AI GATC 5 cut(s) 244, 441, 658, 859, 1378
Sau96I GGNCC 5 cut(s) 219, 576, 1016, 1289, 1576
SbfI CCTGCAGG 1 cut(s) 80
ScrFI CCNGG 7 cut(s) 21, 175, 217, 242, 474, 590, 1299
SdaI CCTGCAGG 1 cut(s) 80
SduI GDGCHC 6 cut(s) 235, 281, 788, 874, 956, 1276
SfaNI GCATC 3 cut(s) 1153, 1175, 1324
SfcI CTRYAG 1 cut(s) 76
SinI GGWCC 2 cut(s) 1016, 1289
SmiMI CAYNNNNRTG 3 cut(s) 272, 599, 1484
SmlI CTYRAG 1 cut(s) 1523
SmoI CTYRAG 1 cut(s) 1523
Sse8387I CCTGCAGG 1 cut(s) 80
SseBI AGGCCT 1 cut(s) 1508
SsiI CCGC 7 cut(s) 36, 43, 222, 430, 1094, 1337, 1679
SspI AATATT 2 cut(s) 264, 1222
SspMI CTAG 4 cut(s) 840, 917, 1269, 1373
StuI AGGCCT 1 cut(s) 1508
StyD4I CCNGG 7 cut(s) 19, 173, 215, 240, 472, 588, 1297
StyI CCWWGG 4 cut(s) 437, 600, 1008, 1285
TaaI ACNGT 5 cut(s) 230, 776, 962, 1078, 1543
TaiI ACGT 4 cut(s) 99, 412, 884, 1030
TaqI TCGA 2 cut(s) 927, 1454
TauI GCSGC 5 cut(s) 38, 45, 224, 432, 1097
Tru1I TTAA 6 cut(s) 716, 1353, 1502, 1524, 1674, 1683
Tru9I TTAA 6 cut(s) 716, 1353, 1502, 1524, 1674, 1683
TscAI CASTG 5 cut(s) 233, 286, 553, 956, 965
TseFI GTSAC 6 cut(s) 97, 104, 178, 190, 211, 1486
TseI GCWGC 2 cut(s) 257, 1091
Tsp45I GTSAC 6 cut(s) 97, 104, 178, 190, 211, 1486
TspDTI ATGAA 3 cut(s) 365, 993, 1547
TspRI CASTG 5 cut(s) 233, 286, 553, 956, 965
Van91I CCANNNNNTGG 2 cut(s) 1286, 1298
Vha464I CTTAAG 1 cut(s) 1523
VpaK11BI GGWCC 2 cut(s) 1016, 1289
XapI RAATTY 3 cut(s) 352, 686, 987
XcmI CCANNNNNNNNNTGG 1 cut(s) 17
XmiI GTMKAC 1 cut(s) 1454
XspI CTAG 4 cut(s) 840, 917, 1269, 1373
Zsp2I ATGCAT 1 cut(s) 1168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.