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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 67 |
| AccB1I | GGYRCC | 2 cut(s) | 67, 253 |
| AccII | CGCG | 2 cut(s) | 121, 462 |
| AciI | CCGC | 5 cut(s) | 121, 161, 366, 451, 462 |
| AclWI | GGATC | 1 cut(s) | 473 |
| AcoI | YGGCCR | 1 cut(s) | 417 |
| AcsI | RAATTY | 2 cut(s) | 281, 589 |
| AcuI | CTGAAG | 2 cut(s) | 401, 426 |
| AdeI | CACNNNGTG | 1 cut(s) | 474 |
| AfaI | GTAC | 2 cut(s) | 69, 183 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 243, 555, 556, 689 |
| AgsI | TTSAA | 2 cut(s) | 153, 280 |
| AluBI | AGCT | 1 cut(s) | 701 |
| AluI | AGCT | 1 cut(s) | 701 |
| Alw26I | GTCTC | 1 cut(s) | 478 |
| AlwI | GGATC | 1 cut(s) | 473 |
| AoxI | GGCC | 3 cut(s) | 140, 417, 443 |
| ApeKI | GCWGC | 2 cut(s) | 619, 679 |
| ApoI | RAATTY | 2 cut(s) | 281, 589 |
| Asp718I | GGTACC | 1 cut(s) | 67 |
| AsuHPI | GGTGA | 2 cut(s) | 226, 524 |
| AsuNHI | GCTAGC | 1 cut(s) | 622 |
| BalI | TGGCCA | 1 cut(s) | 419 |
| BanI | GGYRCC | 2 cut(s) | 67, 253 |
| BbsI | GAAGAC | 1 cut(s) | 553 |
| BbvI | GCAGC | 2 cut(s) | 606, 691 |
| BccI | CCATC | 1 cut(s) | 509 |
| BceAI | ACGGC | 1 cut(s) | 174 |
| BcoDI | GTCTC | 1 cut(s) | 478 |
| BfaI | CTAG | 1 cut(s) | 623 |
| BfmI | CTRYAG | 2 cut(s) | 216, 303 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 451 |
| BglII | AGATCT | 1 cut(s) | 212 |
| BisI | GCNGC | 3 cut(s) | 452, 620, 680 |
| BlsI | GCNGC | 3 cut(s) | 453, 621, 681 |
| BmiI | GGNNCC | 4 cut(s) | 69, 78, 255, 547 |
| BmtI | GCTAGC | 1 cut(s) | 626 |
| BpiI | GAAGAC | 1 cut(s) | 553 |
| BsaJI | CCNNGG | 2 cut(s) | 72, 446 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 475, 505 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 243, 555, 556, 689 |
| Bse118I | RCCGGY | 1 cut(s) | 236 |
| BseDI | CCNNGG | 2 cut(s) | 72, 446 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 243, 555, 556, 689 |
| BseMII | CTCAG | 1 cut(s) | 479 |
| BseXI | GCAGC | 2 cut(s) | 606, 691 |
| Bsh1236I | CGCG | 2 cut(s) | 121, 462 |
| BshFI | GGCC | 3 cut(s) | 142, 419, 445 |
| BshNI | GGYRCC | 2 cut(s) | 67, 253 |
| BsiSI | CCGG | 1 cut(s) | 237 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 243, 555, 556, 689 |
| BsmAI | GTCTC | 1 cut(s) | 478 |
| BsnI | GGCC | 3 cut(s) | 142, 419, 445 |
| Bsp143I | GATC | 2 cut(s) | 212, 465 |
| BspACI | CCGC | 5 cut(s) | 121, 161, 366, 451, 462 |
| BspANI | GGCC | 3 cut(s) | 142, 419, 445 |
| BspCNI | CTCAG | 1 cut(s) | 480 |
| BspFNI | CGCG | 2 cut(s) | 121, 462 |
| BspLI | GGNNCC | 4 cut(s) | 69, 78, 255, 547 |
| BspMAI | CTGCAG | 1 cut(s) | 220 |
| BspOI | GCTAGC | 1 cut(s) | 626 |
| BspPI | GGATC | 1 cut(s) | 473 |
| BspT107I | GGYRCC | 2 cut(s) | 67, 253 |
| BsrFI | RCCGGY | 1 cut(s) | 236 |
| BssAI | RCCGGY | 1 cut(s) | 236 |
| BssECI | CCNNGG | 2 cut(s) | 72, 446 |
| BssMI | GATC | 2 cut(s) | 212, 465 |
| BssT1I | CCWWGG | 1 cut(s) | 72 |
| Bst4CI | ACNGT | 1 cut(s) | 304 |
| Bst6I | CTCTTC | 4 cut(s) | 337, 355, 402, 583 |
| BstC8I | GCNNGC | 2 cut(s) | 624, 628 |
| BstDEI | CTNAG | 3 cut(s) | 488, 530, 713 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 687 |
| BstFNI | CGCG | 2 cut(s) | 121, 462 |
| BstKTI | GATC | 2 cut(s) | 215, 468 |
| BstMAI | GTCTC | 1 cut(s) | 478 |
| BstMBI | GATC | 2 cut(s) | 212, 465 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 451 |
| BstSFI | CTRYAG | 2 cut(s) | 216, 303 |
| BstUI | CGCG | 2 cut(s) | 121, 462 |
| BstV1I | GCAGC | 2 cut(s) | 606, 691 |
| BstV2I | GAAGAC | 1 cut(s) | 553 |
| BstX2I | RGATCY | 1 cut(s) | 212 |
| BstYI | RGATCY | 1 cut(s) | 212 |
| BsuRI | GGCC | 3 cut(s) | 142, 419, 445 |
| Cac8I | GCNNGC | 2 cut(s) | 624, 628 |
| Cfr10I | RCCGGY | 1 cut(s) | 236 |
| Csp6I | GTAC | 2 cut(s) | 68, 182 |
| CviQI | GTAC | 2 cut(s) | 68, 182 |
| DdeI | CTNAG | 3 cut(s) | 488, 530, 713 |
| DpnI | GATC | 2 cut(s) | 214, 467 |
| DpnII | GATC | 2 cut(s) | 212, 465 |
| DraI | TTTAAA | 1 cut(s) | 286 |
| DraIII | CACNNNGTG | 1 cut(s) | 474 |
| EaeI | YGGCCR | 1 cut(s) | 417 |
| Eam1104I | CTCTTC | 4 cut(s) | 337, 355, 402, 583 |
| EarI | CTCTTC | 4 cut(s) | 337, 355, 402, 583 |
| EciI | GGCGGA | 1 cut(s) | 381 |
| Eco130I | CCWWGG | 1 cut(s) | 72 |
| Eco147I | AGGCCT | 2 cut(s) | 142, 445 |
| Eco57I | CTGAAG | 2 cut(s) | 401, 426 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 687 |
| EcoT14I | CCWWGG | 1 cut(s) | 72 |
| ErhI | CCWWGG | 1 cut(s) | 72 |
| FaiI | YATR | 5 cut(s) | 585, 587, 689, 704, 725 |
| FauI | CCCGC | 1 cut(s) | 455 |
| Fnu4HI | GCNGC | 3 cut(s) | 452, 620, 680 |
| Fsp4HI | GCNGC | 3 cut(s) | 452, 620, 680 |
| FspBI | CTAG | 1 cut(s) | 623 |
| GluI | GCNGC | 3 cut(s) | 452, 620, 680 |
| HaeIII | GGCC | 3 cut(s) | 142, 419, 445 |
| HapII | CCGG | 1 cut(s) | 237 |
| HincII | GTYRAC | 1 cut(s) | 97 |
| HindII | GTYRAC | 1 cut(s) | 97 |
| HinfI | GANTC | 7 cut(s) | 30, 116, 149, 425, 457, 490, 498 |
| HpaII | CCGG | 1 cut(s) | 237 |
| HphI | GGTGA | 2 cut(s) | 226, 524 |
| Hpy166II | GTNNAC | 2 cut(s) | 97, 182 |
| Hpy188I | TCNGA | 1 cut(s) | 495 |
| Hpy8I | GTNNAC | 2 cut(s) | 97, 182 |
| Hpy99I | CGWCG | 2 cut(s) | 245, 506 |
| HpyAV | CCTTC | 5 cut(s) | 244, 253, 376, 560, 738 |
| HpyCH4III | ACNGT | 1 cut(s) | 304 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 218, 373 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 451 |
| HpyF3I | CTNAG | 3 cut(s) | 488, 530, 713 |
| KpnI | GGTACC | 1 cut(s) | 71 |
| Kzo9I | GATC | 2 cut(s) | 212, 465 |
| LmnI | GCTCC | 2 cut(s) | 76, 551 |
| LpnPI | CCDG | 7 cut(s) | 124, 250, 317, 329, 465, 621, 640 |
| Lsp1109I | GCAGC | 2 cut(s) | 606, 691 |
| MaeI | CTAG | 1 cut(s) | 623 |
| MaeIII | GTNAC | 2 cut(s) | 202, 232 |
| MalI | GATC | 2 cut(s) | 214, 467 |
| MboI | GATC | 2 cut(s) | 212, 465 |
| MboII | GAAGA | 6 cut(s) | 331, 354, 372, 419, 553, 570 |
| MfeI | CAATTG | 2 cut(s) | 9, 188 |
| MflI | RGATCY | 1 cut(s) | 212 |
| MlsI | TGGCCA | 1 cut(s) | 419 |
| MluCI | AATT | 8 cut(s) | 9, 106, 188, 221, 281, 293, 589, 750 |
| MluNI | TGGCCA | 1 cut(s) | 419 |
| MlyI | GAGTC | 2 cut(s) | 451, 499 |
| MmeI | TCCRAC | 1 cut(s) | 473 |
| MnlI | CCTC | 8 cut(s) | 58, 332, 356, 384, 392, 435, 456, 500 |
| Mox20I | TGGCCA | 1 cut(s) | 419 |
| MscI | TGGCCA | 1 cut(s) | 419 |
| MseI | TTAA | 1 cut(s) | 285 |
| Msp20I | TGGCCA | 1 cut(s) | 419 |
| MspI | CCGG | 1 cut(s) | 237 |
| MunI | CAATTG | 2 cut(s) | 9, 188 |
| MvnI | CGCG | 2 cut(s) | 121, 462 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 451 |
| NdeII | GATC | 2 cut(s) | 212, 465 |
| NheI | GCTAGC | 1 cut(s) | 622 |
| NlaIV | GGNNCC | 4 cut(s) | 69, 78, 255, 547 |
| NmeAIII | GCCGAG | 1 cut(s) | 427 |
| NmuCI | GTSAC | 1 cut(s) | 232 |
| PceI | AGGCCT | 2 cut(s) | 142, 445 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 254, 434 |
| PfeI | GAWTC | 5 cut(s) | 30, 116, 149, 425, 498 |
| PflFI | GACNNNGTC | 1 cut(s) | 489 |
| PkrI | GCNGC | 3 cut(s) | 453, 621, 681 |
| PleI | GAGTC | 2 cut(s) | 451, 498 |
| PpsI | GAGTC | 2 cut(s) | 451, 498 |
| PspN4I | GGNNCC | 4 cut(s) | 69, 78, 255, 547 |
| PstI | CTGCAG | 1 cut(s) | 220 |
| PsuI | RGATCY | 1 cut(s) | 212 |
| PsyI | GACNNNGTC | 1 cut(s) | 489 |
| RsaI | GTAC | 2 cut(s) | 69, 183 |
| RsaNI | GTAC | 2 cut(s) | 68, 182 |
| SaqAI | TTAA | 1 cut(s) | 285 |
| SatI | GCNGC | 3 cut(s) | 452, 620, 680 |
| Sau3AI | GATC | 2 cut(s) | 212, 465 |
| SchI | GAGTC | 2 cut(s) | 451, 499 |
| SetI | ASST | 5 cut(s) | 69, 255, 511, 703, 749 |
| SfcI | CTRYAG | 2 cut(s) | 216, 303 |
| SgrAI | CRCCGGYG | 1 cut(s) | 236 |
| Sse9I | AATT | 8 cut(s) | 9, 106, 188, 221, 281, 293, 589, 750 |
| SseBI | AGGCCT | 2 cut(s) | 142, 445 |
| SsiI | CCGC | 5 cut(s) | 121, 161, 366, 451, 462 |
| SspMI | CTAG | 1 cut(s) | 623 |
| StuI | AGGCCT | 2 cut(s) | 142, 445 |
| StyI | CCWWGG | 1 cut(s) | 72 |
| TaaI | ACNGT | 1 cut(s) | 304 |
| TaqI | TCGA | 3 cut(s) | 248, 428, 501 |
| TasI | AATT | 8 cut(s) | 9, 106, 188, 221, 281, 293, 589, 750 |
| TauI | GCSGC | 1 cut(s) | 454 |
| TfiI | GAWTC | 5 cut(s) | 30, 116, 149, 425, 498 |
| Tru1I | TTAA | 1 cut(s) | 285 |
| Tru9I | TTAA | 1 cut(s) | 285 |
| TseFI | GTSAC | 1 cut(s) | 232 |
| TseI | GCWGC | 2 cut(s) | 619, 679 |
| Tsp45I | GTSAC | 1 cut(s) | 232 |
| TspDTI | ATGAA | 4 cut(s) | 51, 78, 562, 719 |
| TspGWI | ACGGA | 1 cut(s) | 519 |
| Tth111I | GACNNNGTC | 1 cut(s) | 489 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 687 |
| XapI | RAATTY | 2 cut(s) | 281, 589 |
| XspI | CTAG | 1 cut(s) | 623 |