Rh7AG472600

dnaJ homolog subfamily C member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000044
Physical Location & Seq
Reverse (-)
65600863 .. 65602226
1364 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG472600.1

Sequence Viewer

Length: 1167 bp
ATGGAGAATAGAGATGCAGCTGTTGCTGCAACAGGAGCGGTGATTGGTGATCTTTCCAACCCACTGAGGGTTTCTCTTTCAACCAGTTGCACCAAAGATGAAGGTGAAGGTTATACACCAAAAATGTTGAGAGACTTATTGTCCAAGTTTGGGGGAGTTAAAGACATCTTCCTTGGTTCAGTTTGTATGGCTTTGGTTCTGATGGAGAATAGAGATGCAGCTGTTGCTGCAACAGGAGCGGTAATTGGTGATCTTTCCAACCCGCTGAAGGTCTCTCTTTTTCAACCAGTTGCACCAAAGATGAAGGTGTCTCCGGCAGCTGAGAAGGTTTTGGTGGACGTGGATTTGTCCTCTGATCTTCCTTGGGATTTAACTGTTCGTCGAAAAAATGGGGAGGTAGTTGTGGTCGAAGTTGAATATGAACGTCTTCCTGACTATTGCCTCCACTGTGGTAACATTGGTCATAGGCTTTCAGATTGCAAGCTTGTCCAGACACCTACAGGTTCGCTTCCACCAGATGTGGCTGATGTGGGTCGTGGGCGCTCACGTAAGCCTCGTCGCCGGCGGCGGCCCAAATCTAAGCAGAAGCATGTTCCAAAACAATCAGTGAAAGGGATTGGGAAGCAGGTTATAGTTGATAGTACTCCTCCTGTAGTGGAAGACCCTGGAGAGGGTCCTTCCTTCTCTAAGCGGACTTTTTCTCAGGTTCCTTGTCTTCTCCCTACGTTGGAGAATAGGAATGGCTCTACGGATGCCACTGTCACTGCGGTTCATGATGTTGTGAGGCCAATTGGTTTCGCTACCGACACTGTGGTAGTGGCTACGACTGAGAACTCGACTGATGCACAACAGATTGTCACTCTTCCTAACGCTAATGGACAGATTGAACAGGTGGGTGATGTTGGCCTTCAATGTGTGGAGGATGCAGCTGGTGGAAATGAAAGGACTTTTTCTACTAGGGGTTCCGAGAGGAATGAGGAGTATGAGCATGATGTTAATCTTACCTCTTTACATCCACAGAGTTGGTATGAGGAGGCTGAACGAGAAGGTAATGAAGATGGTTTTATTGAGGTCATGTCTAGGGCAAATAGAAAATCAATGAGAAGGGCCACTCAATCTGAGAACAGGGAGGCCTATCTCCGCCGAACCAAAGAAGCGTCTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ RRM_1

Protein Analysis

388

Amino Acids

42.31

Weight (kDa)

6.16

Isoelectric Point (pI)

47.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_4 PF14392 125 - 161 3.6e-07 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000044)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07760 AT5G28823
fragaria_vesca FvH4_1g13572 FvH4_2g03281 FvH4_2g04691 FvH4_2g08332 FvH4_2g08333 FvH4_2g15313 FvH4_2g26101 FvH4_2g29541 FvH4_3g06911 FvH4_3g34351 FvH4_3g43733 FvH4_4g02432 FvH4_4g05601 FvH4_4g08213 FvH4_4g09961 FvH4_4g10131 FvH4_4g20001 FvH4_4g20002 FvH4_5g01051 FvH4_5g01401 FvH4_5g27943 FvH4_6g09220 FvH4_6g17383 FvH4_6g35491 FvH4_6g46421 FvH4_7g04151 FvH4_7g13962 FvH4_7g18611 FvH4_7g19491 FvH4_7g19511 FvH4_7g26562
malus_domestica MD06G1221600.v1.1
pyrus_communis pycom10g21150
rosa_chinensis RchiOBHm_Chr1g0337571 RchiOBHm_Chr2g0168771 RchiOBHm_Chr3g0453631 RchiOBHm_Chr6g0278581
rosa_laevigata RLG00000001899 RLG00000001925 RLG00000002026 RLG00000003410 RLG00000003767 RLG00000004304 RLG00000004473 RLG00000004677 RLG00000006856 RLG00000007994 RLG00000009888 RLG00000011627 RLG00000012174 RLG00000012217 RLG00000013118 RLG00000013736 RLG00000014194 RLG00000014251 RLG00000015011 RLG00000015057 RLG00000015235 RLG00000017416 RLG00000018052 RLG00000018537 RLG00000019968 RLG00000020096 RLG00000020263 RLG00000022606 RLG00000023119 RLG00000028111 RLG00000029686 RLG00000030126 RLG00000031124 RLG00000031236 RLG00000032766 RLG00000033171 RLG00000033548 RLG00000033987 RLG00000034062 RLG00000035115 RLG00000035863
rosa_multiflora Rmu_co8036712.1_g000001 Rmu_co8080248.1_g000001 Rmu_co8208334.1_g000001 Rmu_co8253451.1_g000001 Rmu_co8393241.1_g000001 Rmu_co8522225.1_g000005 Rmu_sc0000060.1_g000030 Rmu_sc0000060.1_g000031 Rmu_sc0000060.1_g000032 Rmu_sc0000090.1_g000008 Rmu_sc0000149.1_g000051 Rmu_sc0000149.1_g000058 Rmu_sc0000309.1_g000050 Rmu_sc0000370.1_g000022 Rmu_sc0000370.1_g000023 Rmu_sc0000370.1_g000024 Rmu_sc0000418.1_g000018 Rmu_sc0000427.1_g000014 Rmu_sc0000427.1_g000015 Rmu_sc0000434.1_g000008 Rmu_sc0000487.1_g000038 Rmu_sc0000487.1_g000039 Rmu_sc0000569.1_g000029 Rmu_sc0000580.1_g000097 Rmu_sc0000595.1_g000068 Rmu_sc0000607.1_g000027 Rmu_sc0000738.1_g000004 Rmu_sc0000758.1_g000001 Rmu_sc0000758.1_g000002 Rmu_sc0000870.1_g000019 Rmu_sc0000924.1_g000040 Rmu_sc0000924.1_g000041 Rmu_sc0000999.1_g000037 Rmu_sc0001001.1_g000001 Rmu_sc0001010.1_g000080 Rmu_sc0001075.1_g000041 Rmu_sc0001097.1_g000016 Rmu_sc0001173.1_g000020 Rmu_sc0001258.1_g000010 Rmu_sc0001425.1_g000031 Rmu_sc0001493.1_g000020 Rmu_sc0001493.1_g000021 Rmu_sc0001644.1_g000024 Rmu_sc0001648.1_g000039 Rmu_sc0001662.1_g000002 Rmu_sc0001849.1_g000046 Rmu_sc0001851.1_g000038 Rmu_sc0001861.1_g000006 Rmu_sc0001899.1_g000008 Rmu_sc0002231.1_g000023 Rmu_sc0002393.1_g000012 Rmu_sc0002515.1_g000010 Rmu_sc0002551.1_g000013 Rmu_sc0002680.1_g000029 Rmu_sc0002700.1_g000030 Rmu_sc0002700.1_g000031 Rmu_sc0002709.1_g000035 Rmu_sc0002779.1_g000017 Rmu_sc0003267.1_g000040 Rmu_sc0003306.1_g000009 Rmu_sc0003338.1_g000014 Rmu_sc0003522.1_g000038 Rmu_sc0003522.1_g000039 Rmu_sc0003653.1_g000031 Rmu_sc0003901.1_g000003 Rmu_sc0003920.1_g000009 Rmu_sc0004014.1_g000009 Rmu_sc0004016.1_g000013 Rmu_sc0004031.1_g000002 Rmu_sc0004106.1_g000001 Rmu_sc0004432.1_g000004 Rmu_sc0004481.1_g000020 Rmu_sc0004874.1_g000005 Rmu_sc0004928.1_g000005 Rmu_sc0005065.1_g000053 Rmu_sc0005091.1_g000005 Rmu_sc0005217.1_g000015 Rmu_sc0005242.1_g000002 Rmu_sc0005300.1_g000011 Rmu_sc0005400.1_g000004 Rmu_sc0005486.1_g000007 Rmu_sc0005527.1_g000015 Rmu_sc0006059.1_g000021 Rmu_sc0006087.1_g000004 Rmu_sc0006184.1_g000006 Rmu_sc0006184.1_g000007 Rmu_sc0006578.1_g000006 Rmu_sc0006730.1_g000010 Rmu_sc0006736.1_g000030 Rmu_sc0006736.1_g000033 Rmu_sc0007333.1_g000018 Rmu_sc0007856.1_g000010 Rmu_sc0008231.1_g000003 Rmu_sc0009862.1_g000012 Rmu_sc0010547.1_g000001 Rmu_sc0010547.1_g000003 Rmu_sc0010632.1_g000012 Rmu_sc0010747.1_g000008 Rmu_sc0011075.1_g000009 Rmu_sc0011565.1_g000004 Rmu_sc0011641.1_g000003 Rmu_sc0013102.1_g000013 Rmu_sc0013160.1_g000006 Rmu_sc0014846.1_g000004 Rmu_sc0017037.1_g000003 Rmu_sc0018203.1_g000001 Rmu_sc0018204.1_g000001 Rmu_sc0018348.1_g000001 Rmu_sc0019354.1_g000002 Rmu_sc0021630.1_g000002 Rmu_sc0022987.1_g000002 Rmu_sc0024469.1_g000005 Rmu_sc0033519.1_g000001 Rmu_sc0033519.1_g000002 Rmu_sc0033519.1_g000003 Rmu_sc0042775.1_g000001 Rmu_ssc0000110.1_g000003 Rmu_ssc0000110.1_g000004 Rmu_ssc0000126.1_g000068 Rmu_ssc0000200.1_g000007 Rmu_ssc0000295.1_g000003 Rmu_ssc0000295.1_g000004 Rmu_ssc0000299.1_g000010 Rmu_ssc0000308.1_g000024 Rmu_ssc0000339.1_g000006 Rmu_ssc0000385.1_g000012 Rmu_ssc0000409.1_g000004 Rmu_ssc0000421.1_g000004
rosa_roxburghii Rroxscaffold_156G00440360 Rroxscaffold_166G00440800 Rroxscaffold_1G00039040 Rroxscaffold_1G00039050 Rroxscaffold_1G00073950 Rroxscaffold_2G00091710 Rroxscaffold_2G00120050 Rroxscaffold_2G00122590 Rroxscaffold_3G00219700 Rroxscaffold_3G00264140 Rroxscaffold_4G00290600 Rroxscaffold_4G00323610 Rroxscaffold_4G00328460 Rroxscaffold_5G00343440 Rroxscaffold_5G00343570 Rroxscaffold_5G00378540 Rroxscaffold_5G00385090 Rroxscaffold_7G00169130 Rroxscaffold_7G00216420
rosa_rugosa Rorug01G0065800 Rorug01G0073500 Rorug01G0091700 Rorug01G0096500 Rorug01G0204700.1 Rorug01G0249100 Rorug01G0333800 Rorug01G0333900 Rorug01G0339500 Rorug01G0431300 Rorug02G0085400 Rorug02G0117500 Rorug02G0130900 Rorug02G0178800 Rorug02G0226700 Rorug02G0336300 Rorug02G0338700 Rorug02G0351400 Rorug02G0459900 Rorug03G0187000 Rorug03G0223700 Rorug03G0291300 Rorug03G0291300 Rorug03G0311100 Rorug03G0316900 Rorug03G0346000 Rorug04G0014500 Rorug04G0014600 Rorug04G0124100 Rorug04G0136500 Rorug04G0302000 Rorug04G0338100 Rorug04G0338200 Rorug04G0413100 Rorug05G0182200 Rorug05G0226500 Rorug05G0273300 Rorug05G0292200 Rorug05G0292200 Rorug05G0392500 Rorug05G0394500 Rorug05G0394600 Rorug05G0505600.1 Rorug06G0351400 Rorug06G0393400 Rorug06G0393600 Rorug06G0470000 Rorug07G0063100 Rorug07G0086800 Rorug07G0109200 Rorug07G0236100
rosa_samantha Rh1AG010800 Rh1AG011100 Rh1AG064900 Rh1AG088000 Rh1AG207100 Rh1AG262000 Rh1AG300800 Rh1BG043000 Rh1BG144600 Rh1BG180700 Rh1BG180800 Rh1BG328800 Rh1BG399400 Rh1CG041400 Rh1CG047300 Rh1CG379700 Rh1DG036500 Rh1DG083000 Rh1DG210700 Rh1DG210800 Rh1DG231100 Rh2AG007900 Rh2AG055500 Rh2AG339100 Rh2AG368100 Rh2BG243300 Rh2BG258900 Rh2BG292000 Rh2BG333500 Rh2BG387300 Rh2BG612800 Rh2BG619100 Rh2CG026500 Rh2CG163600 Rh2CG535700 Rh2DG186400 Rh2DG235000 Rh2DG314500 Rh2DG388500 Rh2DG391400 Rh2DG496900 Rh2DG526700 Rh2DG570700 Rh3AG330700 Rh3BG266900 Rh3CG236000 Rh3CG340400 Rh3DG090000 Rh3DG278400 Rh3DG297600 Rh3DG362600 Rh4AG001300 Rh4AG023300 Rh4AG097100 Rh4AG427000 Rh4BG029400 Rh4BG032400 Rh4BG086000 Rh4BG249200 Rh4CG001900 Rh4CG040600 Rh4CG093000 Rh4CG106300 Rh4CG113200 Rh4CG113900 Rh4DG002300 Rh4DG144400 Rh4DG234200 Rh5AG043700 Rh5AG084900 Rh5AG161500 Rh5AG409000 Rh5AG457200 Rh5AG457900 Rh5AG473700 Rh5AG520600 Rh5BG042100 Rh5BG124100 Rh5BG323500 Rh5BG417200 Rh5BG443700 Rh5BG451500 Rh5BG464900 Rh5BG470400 Rh5BG522500 Rh5CG068800 Rh5CG178300 Rh5CG231000 Rh5CG258600 Rh5CG394500 Rh5CG473700 Rh5DG164700 Rh5DG235400 Rh5DG261300 Rh5DG304900 Rh5DG334500 Rh5DG424300 Rh5DG458400 Rh5DG478600 Rh5DG552300 Rh5DG552700 Rh6AG037000 Rh6AG042100 Rh6AG255500 Rh6AG283400 Rh6AG291800 Rh6BG049600 Rh6BG080700 Rh6BG114600 Rh6BG128900 Rh6BG352500 Rh6CG052400 Rh6CG112900 Rh6CG113000 Rh6CG131300 Rh6CG157700 Rh6CG243200 Rh6CG254100 Rh6CG275700 Rh6CG299700 Rh6CG309100 Rh6CG317600 Rh6CG342600 Rh6CG471900 Rh6DG038200 Rh6DG102300 Rh6DG114400 Rh6DG225900 Rh6DG292900 Rh6DG320700 Rh6DG512800 Rh7AG217700 Rh7AG313900 Rh7AG446000 Rh7AG472600 Rh7BG223100 Rh7BG349900 Rh7BG352000 Rh7CG160200 Rh7CG233900 Rh7CG242700 Rh7CG273900 Rh7CG306400 Rh7CG322200 Rh7DG053800 Rh7DG077800 Rh7DG227700 Rh7DG404800
rosa_wichuraiana Rw0G003990 Rw2G022110 Rw2G024890 Rw6G005700 Rw7G008770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 616
AccBSI CCGCTC 2 cut(s) 38, 239
AciI CCGC 8 cut(s) 38, 239, 263, 565, 568, 691, 767, 1141
AcuI CTGAAG 1 cut(s) 287
AfaI GTAC 1 cut(s) 643
AfiI CCNNNNNNNGG 6 cut(s) 67, 150, 268, 670, 671, 727
AgsI TTSAA 5 cut(s) 81, 284, 416, 887, 911
AhdI GACNNNNNGTC 1 cut(s) 139
AjiI CACGTC 1 cut(s) 340
AjnI CCWGG 1 cut(s) 664
AluBI AGCT 5 cut(s) 20, 221, 320, 484, 929
AluI AGCT 5 cut(s) 20, 221, 320, 484, 929
Alw26I GTCTC 3 cut(s) 126, 277, 315
AoxI GGCC 5 cut(s) 569, 785, 904, 1107, 1131
ApeKI GCWGC 6 cut(s) 17, 26, 218, 227, 317, 926
Asp700I GAANNNNTTC 1 cut(s) 426
AspLEI GCGC 1 cut(s) 543
AspS9I GGNCC 3 cut(s) 570, 674, 1107
AsuHPI GGTGA 5 cut(s) 52, 59, 116, 260, 908
AvaII GGWCC 1 cut(s) 674
BbsI GAAGAC 3 cut(s) 419, 666, 707
BbvI GCAGC 6 cut(s) 13, 29, 214, 230, 329, 938
BccI CCATC 2 cut(s) 196, 1052
BciT130I CCWGG 1 cut(s) 666
BcoDI GTCTC 3 cut(s) 126, 277, 315
BfaI CTAG 2 cut(s) 957, 1080
BfmI CTRYAG 2 cut(s) 498, 651
BfoI RGCGCY 1 cut(s) 544
BfuAI ACCTGC 1 cut(s) 616
BisI GCNGC 8 cut(s) 18, 27, 219, 228, 318, 566, 569, 927
BlsI GCNGC 8 cut(s) 19, 28, 220, 229, 319, 567, 570, 928
BmcAI AGTACT 1 cut(s) 643
Bme1390I CCNGG 1 cut(s) 666
Bme18I GGWCC 1 cut(s) 674
BmeRI GACNNNNNGTC 1 cut(s) 139
BmgBI CACGTC 1 cut(s) 340
BmgT120I GGNCC 3 cut(s) 570, 674, 1107
BmiI GGNNCC 3 cut(s) 675, 708, 964
BmrFI CCNGG 1 cut(s) 666
BmsI GCATC 5 cut(s) 4, 205, 742, 832, 913
BpiI GAAGAC 3 cut(s) 419, 666, 707
BplI GAGNNNNNCTC 2 cut(s) 58, 90
BpmI CTGGAG 1 cut(s) 687
BsaAI YACGTR 1 cut(s) 548
BsaBI GATNNNNATC 1 cut(s) 996
BsaI GGTCTC 1 cut(s) 277
BsaJI CCNNGG 3 cut(s) 172, 362, 664
Bsc4I CCNNNNNNNGG 6 cut(s) 67, 150, 268, 670, 671, 727
Bse118I RCCGGY 1 cut(s) 561
Bse1I ACTGG 2 cut(s) 84, 287
Bse8I GATNNNNATC 1 cut(s) 996
BseBI CCWGG 1 cut(s) 666
BseDI CCNNGG 3 cut(s) 172, 362, 664
BseGI GGATG 3 cut(s) 757, 928, 1012
BseJI GATNNNNATC 1 cut(s) 996
BseLI CCNNNNNNNGG 6 cut(s) 67, 150, 268, 670, 671, 727
BseMII CTCAG 5 cut(s) 56, 312, 716, 819, 1110
BseNI ACTGG 2 cut(s) 84, 287
BseRI GAGGAG 3 cut(s) 636, 992, 1046
BseXI GCAGC 6 cut(s) 13, 29, 214, 230, 329, 938
BshFI GGCC 5 cut(s) 571, 787, 906, 1109, 1133
BsiSI CCGG 2 cut(s) 314, 562
BslI CCNNNNNNNGG 6 cut(s) 67, 150, 268, 670, 671, 727
BsmAI GTCTC 3 cut(s) 126, 277, 315
BsnI GGCC 5 cut(s) 571, 787, 906, 1109, 1133
Bso31I GGTCTC 1 cut(s) 277
Bsp143I GATC 3 cut(s) 49, 250, 355
BspACI CCGC 8 cut(s) 38, 239, 263, 565, 568, 691, 767, 1141
BspANI GGCC 5 cut(s) 571, 787, 906, 1109, 1133
BspCNI CTCAG 5 cut(s) 57, 313, 715, 820, 1111
BspHI TCATGA 1 cut(s) 772
BspLI GGNNCC 3 cut(s) 675, 708, 964
BspMI ACCTGC 1 cut(s) 616
BspTNI GGTCTC 1 cut(s) 277
BsrBI CCGCTC 2 cut(s) 38, 239
BsrFI RCCGGY 1 cut(s) 561
BsrI ACTGG 2 cut(s) 84, 287
BssAI RCCGGY 1 cut(s) 561
BssECI CCNNGG 3 cut(s) 172, 362, 664
BssMI GATC 3 cut(s) 49, 250, 355
BssT1I CCWWGG 2 cut(s) 172, 362
Bst2UI CCWGG 1 cut(s) 666
Bst4CI ACNGT 4 cut(s) 376, 449, 760, 811
Bst6I CTCTTC 1 cut(s) 867
BstAPI GCANNNNNTGC 2 cut(s) 23, 224
BstBAI YACGTR 1 cut(s) 548
BstC8I GCNNGC 2 cut(s) 482, 563
BstDEI CTNAG 7 cut(s) 65, 321, 579, 687, 702, 828, 1119
BstF5I GGATG 3 cut(s) 757, 928, 1012
BstH2I RGCGCY 1 cut(s) 544
BstHHI GCGC 1 cut(s) 543
BstKTI GATC 3 cut(s) 52, 253, 358
BstMAI GTCTC 3 cut(s) 126, 277, 315
BstMBI GATC 3 cut(s) 49, 250, 355
BstMWI GCNNNNNNNGC 6 cut(s) 23, 26, 35, 224, 227, 236
BstNI CCWGG 1 cut(s) 666
BstNSI RCATGY 1 cut(s) 593
BstSCI CCNGG 1 cut(s) 664
BstSFI CTRYAG 2 cut(s) 498, 651
BstV1I GCAGC 6 cut(s) 13, 29, 214, 230, 329, 938
BstV2I GAAGAC 3 cut(s) 419, 666, 707
BstXI CCANNNNNNTGG 1 cut(s) 1023
BsuRI GGCC 5 cut(s) 571, 787, 906, 1109, 1133
BtrI CACGTC 1 cut(s) 340
BtsCI GGATG 3 cut(s) 757, 928, 1012
BtsI GCAGTG 1 cut(s) 762
BtsIMutI CAGTG 6 cut(s) 62, 445, 612, 756, 762, 807
BveI ACCTGC 1 cut(s) 616
Cac8I GCNNGC 2 cut(s) 482, 563
CciI TCATGA 1 cut(s) 772
CfoI GCGC 1 cut(s) 543
Cfr10I RCCGGY 1 cut(s) 561
Cfr13I GGNCC 3 cut(s) 570, 674, 1107
CseI GACGC 1 cut(s) 1146
Csp6I GTAC 1 cut(s) 642
CviAII CATG 4 cut(s) 590, 773, 989, 1075
CviQI GTAC 1 cut(s) 642
DdeI CTNAG 7 cut(s) 65, 321, 579, 687, 702, 828, 1119
DpnI GATC 3 cut(s) 51, 252, 357
DpnII GATC 3 cut(s) 49, 250, 355
DriI GACNNNNNGTC 1 cut(s) 139
Eam1104I CTCTTC 1 cut(s) 867
Eam1105I GACNNNNNGTC 1 cut(s) 139
EarI CTCTTC 1 cut(s) 867
EciI GGCGGA 1 cut(s) 1130
Eco130I CCWWGG 2 cut(s) 172, 362
Eco147I AGGCCT 1 cut(s) 1133
Eco31I GGTCTC 1 cut(s) 277
Eco47I GGWCC 1 cut(s) 674
Eco57I CTGAAG 1 cut(s) 287
EcoO109I RGGNCCY 1 cut(s) 674
EcoRII CCWGG 1 cut(s) 664
EcoT14I CCWWGG 2 cut(s) 172, 362
ErhI CCWWGG 2 cut(s) 172, 362
FaeI CATG 4 cut(s) 593, 776, 992, 1078
FatI CATG 4 cut(s) 589, 772, 988, 1074
FauI CCCGC 1 cut(s) 270
Fnu4HI GCNGC 8 cut(s) 18, 27, 219, 228, 318, 566, 569, 927
FokI GGATG 3 cut(s) 764, 935, 999
Fsp4HI GCNGC 8 cut(s) 18, 27, 219, 228, 318, 566, 569, 927
FspBI CTAG 2 cut(s) 957, 1080
GlaI GCGC 1 cut(s) 542
GluI GCNGC 8 cut(s) 18, 27, 219, 228, 318, 566, 569, 927
GsuI CTGGAG 1 cut(s) 687
HaeII RGCGCY 1 cut(s) 544
HaeIII GGCC 5 cut(s) 571, 787, 906, 1109, 1133
HapII CCGG 2 cut(s) 314, 562
HgaI GACGC 1 cut(s) 1146
HhaI GCGC 1 cut(s) 543
Hin1II CATG 4 cut(s) 593, 776, 992, 1078
Hin6I GCGC 1 cut(s) 541
HinP1I GCGC 1 cut(s) 541
HindIII AAGCTT 1 cut(s) 482
HpaII CCGG 2 cut(s) 314, 562
HphI GGTGA 5 cut(s) 52, 59, 116, 260, 908
Hpy166II GTNNAC 1 cut(s) 337
Hpy188I TCNGA 5 cut(s) 201, 355, 475, 967, 1120
Hpy188III TCNNGA 3 cut(s) 431, 490, 773
Hpy8I GTNNAC 1 cut(s) 337
Hpy99I CGWCG 2 cut(s) 384, 561
HpyCH4III ACNGT 4 cut(s) 376, 449, 760, 811
HpyCH4IV ACGT 4 cut(s) 339, 424, 547, 725
HpyCH4V TGCA 9 cut(s) 17, 29, 90, 218, 230, 293, 480, 845, 926
HpyF10VI GCNNNNNNNGC 6 cut(s) 23, 26, 35, 224, 227, 236
HpyF3I CTNAG 7 cut(s) 65, 321, 579, 687, 702, 828, 1119
HpySE526I ACGT 4 cut(s) 339, 424, 547, 725
Hsp92II CATG 4 cut(s) 593, 776, 992, 1078
HspAI GCGC 1 cut(s) 541
KroI GCCGGC 1 cut(s) 561
KroNI GCCGGC 1 cut(s) 563
Kzo9I GATC 3 cut(s) 49, 250, 355
LmnI GCTCC 2 cut(s) 35, 236
Lsp1109I GCAGC 6 cut(s) 13, 29, 214, 230, 329, 938
LweI GCATC 5 cut(s) 4, 205, 742, 832, 913
MaeI CTAG 2 cut(s) 957, 1080
MaeII ACGT 4 cut(s) 339, 424, 547, 725
MaeIII GTNAC 3 cut(s) 452, 760, 856
MalI GATC 3 cut(s) 51, 252, 357
MbiI CCGCTC 2 cut(s) 38, 239
MboI GATC 3 cut(s) 49, 250, 355
MboII GAAGA 7 cut(s) 160, 350, 419, 671, 707, 854, 1067
MfeI CAATTG 1 cut(s) 789
MluCI AATT 2 cut(s) 243, 789
MmeI TCCRAC 3 cut(s) 81, 282, 708
MreI CGCCGGCG 1 cut(s) 561
MroNI GCCGGC 1 cut(s) 561
MroXI GAANNNNTTC 1 cut(s) 426
MseI TTAA 3 cut(s) 159, 371, 996
MspA1I CMGCKG 5 cut(s) 20, 221, 265, 320, 929
MspI CCGG 2 cut(s) 314, 562
MspR9I CCNGG 1 cut(s) 666
MunI CAATTG 1 cut(s) 789
MvaI CCWGG 1 cut(s) 666
MwoI GCNNNNNNNGC 6 cut(s) 23, 26, 35, 224, 227, 236
NaeI GCCGGC 1 cut(s) 563
NdeII GATC 3 cut(s) 49, 250, 355
NgoMIV GCCGGC 1 cut(s) 561
NlaIII CATG 4 cut(s) 593, 776, 992, 1078
NlaIV GGNNCC 3 cut(s) 675, 708, 964
NmuCI GTSAC 2 cut(s) 760, 856
NspI RCATGY 1 cut(s) 593
PagI TCATGA 1 cut(s) 772
PceI AGGCCT 1 cut(s) 1133
PcsI WCGNNNNNNNCGW 1 cut(s) 553
PdiI GCCGGC 1 cut(s) 563
PdmI GAANNNNTTC 1 cut(s) 426
PkrI GCNGC 8 cut(s) 19, 28, 220, 229, 319, 567, 570, 928
Ppu21I YACGTR 1 cut(s) 548
PpuMI RGGWCCY 1 cut(s) 674
Psp5II RGGWCCY 1 cut(s) 674
Psp6I CCWGG 1 cut(s) 664
PspGI CCWGG 1 cut(s) 664
PspN4I GGNNCC 3 cut(s) 675, 708, 964
PspPI GGNCC 3 cut(s) 570, 674, 1107
PspPPI RGGWCCY 1 cut(s) 674
PvuII CAGCTG 4 cut(s) 20, 221, 320, 929
RsaI GTAC 1 cut(s) 643
RsaNI GTAC 1 cut(s) 642
SaqAI TTAA 3 cut(s) 159, 371, 996
SatI GCNGC 8 cut(s) 18, 27, 219, 228, 318, 566, 569, 927
Sau3AI GATC 3 cut(s) 49, 250, 355
Sau96I GGNCC 3 cut(s) 570, 674, 1107
ScaI AGTACT 1 cut(s) 643
ScrFI CCNGG 1 cut(s) 666
SfaNI GCATC 5 cut(s) 4, 205, 742, 832, 913
SfcI CTRYAG 2 cut(s) 498, 651
SgrAI CRCCGGYG 1 cut(s) 561
SinI GGWCC 1 cut(s) 674
Sse9I AATT 2 cut(s) 243, 789
SseBI AGGCCT 1 cut(s) 1133
SsiI CCGC 8 cut(s) 38, 239, 263, 565, 568, 691, 767, 1141
SspMI CTAG 2 cut(s) 957, 1080
StuI AGGCCT 1 cut(s) 1133
StyD4I CCNGG 1 cut(s) 664
StyI CCWWGG 2 cut(s) 172, 362
TaaI ACNGT 4 cut(s) 376, 449, 760, 811
TaiI ACGT 4 cut(s) 342, 427, 550, 728
TaqI TCGA 3 cut(s) 382, 408, 836
TasI AATT 2 cut(s) 243, 789
TatI WGTACW 1 cut(s) 641
TauI GCSGC 2 cut(s) 568, 571
Tru1I TTAA 3 cut(s) 159, 371, 996
Tru9I TTAA 3 cut(s) 159, 371, 996
TscAI CASTG 6 cut(s) 69, 452, 612, 763, 769, 814
TseFI GTSAC 2 cut(s) 760, 856
TseI GCWGC 6 cut(s) 17, 26, 218, 227, 317, 926
Tsp45I GTSAC 2 cut(s) 760, 856
TspDTI ATGAA 6 cut(s) 114, 317, 435, 761, 954, 1068
TspGWI ACGGA 1 cut(s) 764
TspRI CASTG 6 cut(s) 69, 452, 612, 763, 769, 814
VpaK11BI GGWCC 1 cut(s) 674
XceI RCATGY 1 cut(s) 593
XmnI GAANNNNTTC 1 cut(s) 426
XspI CTAG 2 cut(s) 957, 1080
ZrmI AGTACT 1 cut(s) 643
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.