Reverse transcriptase (RNA-dependent DNA polymerase)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 4 - 226 | 1.2e-09 | Endonuclease/Exonuclease/phosphatase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 259 |
| AccB1I | GGYRCC | 2 cut(s) | 458, 936 |
| AccI | GTMKAC | 1 cut(s) | 254 |
| AciI | CCGC | 1 cut(s) | 346 |
| AclWI | GGATC | 3 cut(s) | 270, 642, 883 |
| AcoI | YGGCCR | 1 cut(s) | 343 |
| AcsI | RAATTY | 2 cut(s) | 124, 485 |
| AcyI | GRCGYC | 1 cut(s) | 937 |
| AfaI | GTAC | 2 cut(s) | 72, 331 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 468, 660 |
| AgsI | TTSAA | 9 cut(s) | 61, 124, 129, 616, 702, 833, 851, 893, 922 |
| AluBI | AGCT | 4 cut(s) | 233, 317, 774, 866 |
| AluI | AGCT | 4 cut(s) | 233, 317, 774, 866 |
| Alw21I | GWGCWC | 1 cut(s) | 442 |
| Alw26I | GTCTC | 3 cut(s) | 550, 731, 893 |
| AlwI | GGATC | 3 cut(s) | 270, 642, 883 |
| AoxI | GGCC | 2 cut(s) | 343, 713 |
| ApeKI | GCWGC | 1 cut(s) | 863 |
| ApoI | RAATTY | 2 cut(s) | 124, 485 |
| AspLEI | GCGC | 2 cut(s) | 939, 1032 |
| AspS9I | GGNCC | 3 cut(s) | 398, 713, 792 |
| AsuC2I | CCSGG | 3 cut(s) | 185, 712, 941 |
| AsuHPI | GGTGA | 2 cut(s) | 565, 1001 |
| AvaII | GGWCC | 2 cut(s) | 398, 792 |
| BaeGI | GKGCMC | 1 cut(s) | 463 |
| BanI | GGYRCC | 2 cut(s) | 458, 936 |
| Bbv12I | GWGCWC | 1 cut(s) | 442 |
| BbvI | GCAGC | 1 cut(s) | 875 |
| BccI | CCATC | 2 cut(s) | 616, 969 |
| BciVI | GTATCC | 1 cut(s) | 520 |
| BclI | TGATCA | 1 cut(s) | 673 |
| BcnI | CCSGG | 3 cut(s) | 185, 712, 941 |
| BcoDI | GTCTC | 3 cut(s) | 550, 731, 893 |
| BfaI | CTAG | 2 cut(s) | 230, 870 |
| BfoI | RGCGCY | 1 cut(s) | 940 |
| BfuAI | ACCTGC | 1 cut(s) | 259 |
| BfuI | GTATCC | 1 cut(s) | 520 |
| BisI | GCNGC | 2 cut(s) | 346, 864 |
| BlsI | GCNGC | 2 cut(s) | 347, 865 |
| Bme1390I | CCNGG | 3 cut(s) | 185, 712, 941 |
| Bme18I | GGWCC | 2 cut(s) | 398, 792 |
| BmgT120I | GGNCC | 3 cut(s) | 398, 713, 792 |
| BmiI | GGNNCC | 4 cut(s) | 20, 78, 460, 938 |
| BmrFI | CCNGG | 3 cut(s) | 185, 712, 941 |
| BmsI | GCATC | 1 cut(s) | 43 |
| BpuEI | CTTGAG | 2 cut(s) | 33, 181 |
| BpuMI | CCSGG | 3 cut(s) | 185, 712, 941 |
| BsaHI | GRCGYC | 1 cut(s) | 937 |
| BsaJI | CCNNGG | 5 cut(s) | 184, 236, 258, 401, 659 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 468, 660 |
| Bse3DI | GCAATG | 2 cut(s) | 30, 501 |
| BseDI | CCNNGG | 5 cut(s) | 184, 236, 258, 401, 659 |
| BseGI | GGATG | 1 cut(s) | 627 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 468, 660 |
| BseMI | GCAATG | 2 cut(s) | 30, 501 |
| BseSI | GKGCMC | 1 cut(s) | 463 |
| BseXI | GCAGC | 1 cut(s) | 875 |
| BshFI | GGCC | 2 cut(s) | 345, 715 |
| BshNI | GGYRCC | 2 cut(s) | 458, 936 |
| BsiHKAI | GWGCWC | 1 cut(s) | 442 |
| BsiSI | CCGG | 4 cut(s) | 184, 349, 711, 940 |
| BslFI | GGGAC | 1 cut(s) | 26 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 468, 660 |
| BsmAI | GTCTC | 3 cut(s) | 550, 731, 893 |
| BsmBI | CGTCTC | 1 cut(s) | 550 |
| BsmFI | GGGAC | 1 cut(s) | 26 |
| BsnI | GGCC | 2 cut(s) | 345, 715 |
| Bsp1286I | GDGCHC | 2 cut(s) | 442, 463 |
| Bsp1407I | TGTACA | 1 cut(s) | 70 |
| Bsp143I | GATC | 6 cut(s) | 262, 473, 634, 673, 875, 991 |
| Bsp19I | CCATGG | 2 cut(s) | 236, 401 |
| BspACI | CCGC | 1 cut(s) | 346 |
| BspANI | GGCC | 2 cut(s) | 345, 715 |
| BspHI | TCATGA | 1 cut(s) | 442 |
| BspLI | GGNNCC | 4 cut(s) | 20, 78, 460, 938 |
| BspMI | ACCTGC | 1 cut(s) | 259 |
| BspPI | GGATC | 3 cut(s) | 270, 642, 883 |
| BspT107I | GGYRCC | 2 cut(s) | 458, 936 |
| BsrDI | GCAATG | 2 cut(s) | 30, 501 |
| BsrGI | TGTACA | 1 cut(s) | 70 |
| BssECI | CCNNGG | 5 cut(s) | 184, 236, 258, 401, 659 |
| BssMI | GATC | 6 cut(s) | 262, 473, 634, 673, 875, 991 |
| BssNI | GRCGYC | 1 cut(s) | 937 |
| BssT1I | CCWWGG | 3 cut(s) | 236, 401, 659 |
| Bst4CI | ACNGT | 3 cut(s) | 66, 305, 561 |
| Bst6I | CTCTTC | 1 cut(s) | 879 |
| BstACI | GRCGYC | 1 cut(s) | 937 |
| BstAUI | TGTACA | 1 cut(s) | 70 |
| BstC8I | GCNNGC | 1 cut(s) | 912 |
| BstDEI | CTNAG | 1 cut(s) | 587 |
| BstDSI | CCRYGG | 2 cut(s) | 236, 401 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 658 |
| BstF5I | GGATG | 1 cut(s) | 627 |
| BstH2I | RGCGCY | 1 cut(s) | 940 |
| BstHHI | GCGC | 2 cut(s) | 939, 1032 |
| BstKTI | GATC | 6 cut(s) | 265, 476, 637, 676, 878, 994 |
| BstMAI | GTCTC | 3 cut(s) | 550, 731, 893 |
| BstMBI | GATC | 6 cut(s) | 262, 473, 634, 673, 875, 991 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 323 |
| BstSCI | CCNGG | 3 cut(s) | 183, 710, 939 |
| BstSLI | GKGCMC | 1 cut(s) | 463 |
| BstV1I | GCAGC | 1 cut(s) | 875 |
| BsuI | GTATCC | 1 cut(s) | 520 |
| BsuRI | GGCC | 2 cut(s) | 345, 715 |
| BtgI | CCRYGG | 2 cut(s) | 236, 401 |
| BtgZI | GCGATG | 1 cut(s) | 988 |
| BtsCI | GGATG | 1 cut(s) | 627 |
| BveI | ACCTGC | 1 cut(s) | 259 |
| Cac8I | GCNNGC | 1 cut(s) | 912 |
| CciI | TCATGA | 1 cut(s) | 442 |
| CfoI | GCGC | 2 cut(s) | 939, 1032 |
| Cfr13I | GGNCC | 3 cut(s) | 398, 713, 792 |
| Csp6I | GTAC | 2 cut(s) | 71, 330 |
| CviAII | CATG | 8 cut(s) | 237, 402, 443, 477, 521, 549, 691, 1013 |
| CviQI | GTAC | 2 cut(s) | 71, 330 |
| DdeI | CTNAG | 1 cut(s) | 587 |
| DinI | GGCGCC | 1 cut(s) | 938 |
| DpnI | GATC | 6 cut(s) | 264, 475, 636, 675, 877, 993 |
| DpnII | GATC | 6 cut(s) | 262, 473, 634, 673, 875, 991 |
| DraI | TTTAAA | 1 cut(s) | 379 |
| EaeI | YGGCCR | 1 cut(s) | 343 |
| Eam1104I | CTCTTC | 1 cut(s) | 879 |
| EarI | CTCTTC | 1 cut(s) | 879 |
| Eco130I | CCWWGG | 3 cut(s) | 236, 401, 659 |
| Eco47I | GGWCC | 2 cut(s) | 398, 792 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 658 |
| EcoRI | GAATTC | 1 cut(s) | 124 |
| EcoT14I | CCWWGG | 3 cut(s) | 236, 401, 659 |
| EgeI | GGCGCC | 1 cut(s) | 938 |
| EheI | GGCGCC | 1 cut(s) | 938 |
| ErhI | CCWWGG | 3 cut(s) | 236, 401, 659 |
| Esp3I | CGTCTC | 1 cut(s) | 550 |
| FaeI | CATG | 8 cut(s) | 240, 405, 446, 480, 524, 552, 694, 1016 |
| FaqI | GGGAC | 1 cut(s) | 26 |
| FatI | CATG | 8 cut(s) | 236, 401, 442, 476, 520, 548, 690, 1012 |
| FbaI | TGATCA | 1 cut(s) | 673 |
| FblI | GTMKAC | 1 cut(s) | 254 |
| Fnu4HI | GCNGC | 2 cut(s) | 346, 864 |
| FokI | GGATG | 1 cut(s) | 634 |
| Fsp4HI | GCNGC | 2 cut(s) | 346, 864 |
| FspBI | CTAG | 2 cut(s) | 230, 870 |
| GlaI | GCGC | 2 cut(s) | 938, 1031 |
| GluI | GCNGC | 2 cut(s) | 346, 864 |
| HaeII | RGCGCY | 1 cut(s) | 940 |
| HaeIII | GGCC | 2 cut(s) | 345, 715 |
| HapII | CCGG | 4 cut(s) | 184, 349, 711, 940 |
| HhaI | GCGC | 2 cut(s) | 939, 1032 |
| Hin1I | GRCGYC | 1 cut(s) | 937 |
| Hin1II | CATG | 8 cut(s) | 240, 405, 446, 480, 524, 552, 694, 1016 |
| Hin6I | GCGC | 2 cut(s) | 937, 1030 |
| HinP1I | GCGC | 2 cut(s) | 937, 1030 |
| HinfI | GANTC | 3 cut(s) | 241, 293, 926 |
| HpaII | CCGG | 4 cut(s) | 184, 349, 711, 940 |
| HphI | GGTGA | 2 cut(s) | 565, 1001 |
| Hpy166II | GTNNAC | 6 cut(s) | 255, 301, 322, 512, 546, 708 |
| Hpy188I | TCNGA | 6 cut(s) | 262, 502, 673, 740, 880, 985 |
| Hpy188III | TCNNGA | 2 cut(s) | 50, 443 |
| Hpy8I | GTNNAC | 6 cut(s) | 255, 301, 322, 512, 546, 708 |
| HpyAV | CCTTC | 2 cut(s) | 839, 980 |
| HpyCH4III | ACNGT | 3 cut(s) | 66, 305, 561 |
| HpyCH4IV | ACGT | 1 cut(s) | 579 |
| HpyCH4V | TGCA | 5 cut(s) | 176, 194, 651, 863, 910 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 323 |
| HpyF3I | CTNAG | 1 cut(s) | 587 |
| HpySE526I | ACGT | 1 cut(s) | 579 |
| Hsp92I | GRCGYC | 1 cut(s) | 937 |
| Hsp92II | CATG | 8 cut(s) | 240, 405, 446, 480, 524, 552, 694, 1016 |
| HspAI | GCGC | 2 cut(s) | 937, 1030 |
| KasI | GGCGCC | 1 cut(s) | 936 |
| Ksp22I | TGATCA | 1 cut(s) | 673 |
| Kzo9I | GATC | 6 cut(s) | 262, 473, 634, 673, 875, 991 |
| LmnI | GCTCC | 2 cut(s) | 82, 238 |
| Lsp1109I | GCAGC | 1 cut(s) | 875 |
| LweI | GCATC | 1 cut(s) | 43 |
| MaeI | CTAG | 2 cut(s) | 230, 870 |
| MaeII | ACGT | 1 cut(s) | 579 |
| MaeIII | GTNAC | 2 cut(s) | 391, 575 |
| MalI | GATC | 6 cut(s) | 264, 475, 636, 675, 877, 993 |
| MboI | GATC | 6 cut(s) | 262, 473, 634, 673, 875, 991 |
| MboII | GAAGA | 3 cut(s) | 374, 896, 993 |
| MhlI | GDGCHC | 2 cut(s) | 442, 463 |
| MluCI | AATT | 9 cut(s) | 124, 129, 485, 610, 616, 858, 905, 916, 997 |
| Mly113I | GGCGCC | 1 cut(s) | 937 |
| MlyI | GAGTC | 1 cut(s) | 935 |
| MnlI | CCTC | 6 cut(s) | 144, 268, 449, 475, 619, 805 |
| MseI | TTAA | 2 cut(s) | 378, 423 |
| MspA1I | CMGCKG | 1 cut(s) | 317 |
| MspI | CCGG | 4 cut(s) | 184, 349, 711, 940 |
| MspR9I | CCNGG | 3 cut(s) | 185, 712, 941 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 323 |
| NarI | GGCGCC | 1 cut(s) | 937 |
| NciI | CCSGG | 3 cut(s) | 185, 712, 941 |
| NcoI | CCATGG | 2 cut(s) | 236, 401 |
| NdeII | GATC | 6 cut(s) | 262, 473, 634, 673, 875, 991 |
| NlaIII | CATG | 8 cut(s) | 240, 405, 446, 480, 524, 552, 694, 1016 |
| NlaIV | GGNNCC | 4 cut(s) | 20, 78, 460, 938 |
| NmeAIII | GCCGAG | 1 cut(s) | 130 |
| PagI | TCATGA | 1 cut(s) | 442 |
| PfeI | GAWTC | 2 cut(s) | 241, 293 |
| PkrI | GCNGC | 2 cut(s) | 347, 865 |
| PleI | GAGTC | 1 cut(s) | 934 |
| PluTI | GGCGCC | 1 cut(s) | 940 |
| PpsI | GAGTC | 1 cut(s) | 934 |
| PspN4I | GGNNCC | 4 cut(s) | 20, 78, 460, 938 |
| PspPI | GGNCC | 3 cut(s) | 398, 713, 792 |
| PvuII | CAGCTG | 1 cut(s) | 317 |
| RsaI | GTAC | 2 cut(s) | 72, 331 |
| RsaNI | GTAC | 2 cut(s) | 71, 330 |
| SaqAI | TTAA | 2 cut(s) | 378, 423 |
| SatI | GCNGC | 2 cut(s) | 346, 864 |
| Sau3AI | GATC | 6 cut(s) | 262, 473, 634, 673, 875, 991 |
| Sau96I | GGNCC | 3 cut(s) | 398, 713, 792 |
| SchI | GAGTC | 1 cut(s) | 935 |
| ScrFI | CCNGG | 3 cut(s) | 185, 712, 941 |
| SduI | GDGCHC | 2 cut(s) | 442, 463 |
| SfaNI | GCATC | 1 cut(s) | 43 |
| SfoI | GGCGCC | 1 cut(s) | 938 |
| SinI | GGWCC | 2 cut(s) | 398, 792 |
| SmlI | CTYRAG | 2 cut(s) | 48, 160 |
| SmoI | CTYRAG | 2 cut(s) | 48, 160 |
| Sse9I | AATT | 9 cut(s) | 124, 129, 485, 610, 616, 858, 905, 916, 997 |
| SsiI | CCGC | 1 cut(s) | 346 |
| SspDI | GGCGCC | 1 cut(s) | 936 |
| SspMI | CTAG | 2 cut(s) | 230, 870 |
| StyD4I | CCNGG | 3 cut(s) | 183, 710, 939 |
| StyI | CCWWGG | 3 cut(s) | 236, 401, 659 |
| TaaI | ACNGT | 3 cut(s) | 66, 305, 561 |
| TaiI | ACGT | 1 cut(s) | 582 |
| TasI | AATT | 9 cut(s) | 124, 129, 485, 610, 616, 858, 905, 916, 997 |
| TatI | WGTACW | 1 cut(s) | 70 |
| TauI | GCSGC | 1 cut(s) | 348 |
| TfiI | GAWTC | 2 cut(s) | 241, 293 |
| Tru1I | TTAA | 2 cut(s) | 378, 423 |
| Tru9I | TTAA | 2 cut(s) | 378, 423 |
| TseI | GCWGC | 1 cut(s) | 863 |
| TspDTI | ATGAA | 4 cut(s) | 459, 509, 897, 1001 |
| TspGWI | ACGGA | 1 cut(s) | 795 |
| VpaK11BI | GGWCC | 2 cut(s) | 398, 792 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 658 |
| XapI | RAATTY | 2 cut(s) | 124, 485 |
| XmiI | GTMKAC | 1 cut(s) | 254 |
| XspI | CTAG | 2 cut(s) | 230, 870 |