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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 76 |
| AciI | CCGC | 1 cut(s) | 374 |
| AclWI | GGATC | 1 cut(s) | 24 |
| AcsI | RAATTY | 2 cut(s) | 82, 196 |
| AcuI | CTGAAG | 2 cut(s) | 20, 309 |
| AfaI | GTAC | 1 cut(s) | 21 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 327, 328 |
| AflII | CTTAAG | 1 cut(s) | 557 |
| AjnI | CCWGG | 2 cut(s) | 204, 256 |
| AluBI | AGCT | 2 cut(s) | 478, 577 |
| AluI | AGCT | 2 cut(s) | 478, 577 |
| Alw21I | GWGCWC | 1 cut(s) | 550 |
| AlwI | GGATC | 1 cut(s) | 24 |
| AoxI | GGCC | 1 cut(s) | 183 |
| ApeKI | GCWGC | 1 cut(s) | 143 |
| ApoI | RAATTY | 2 cut(s) | 82, 196 |
| AspLEI | GCGC | 1 cut(s) | 502 |
| AspS9I | GGNCC | 1 cut(s) | 202 |
| AsuC2I | CCSGG | 1 cut(s) | 327 |
| AsuHPI | GGTGA | 5 cut(s) | 205, 310, 323, 413, 440 |
| AvaII | GGWCC | 1 cut(s) | 202 |
| BauI | CACGAG | 1 cut(s) | 167 |
| Bbv12I | GWGCWC | 1 cut(s) | 550 |
| BbvI | GCAGC | 1 cut(s) | 130 |
| BciT130I | CCWGG | 2 cut(s) | 206, 258 |
| BcnI | CCSGG | 1 cut(s) | 327 |
| BfaI | CTAG | 1 cut(s) | 495 |
| BfmI | CTRYAG | 1 cut(s) | 441 |
| BfrI | CTTAAG | 1 cut(s) | 557 |
| BglII | AGATCT | 1 cut(s) | 62 |
| BisI | GCNGC | 2 cut(s) | 144, 375 |
| BlsI | GCNGC | 2 cut(s) | 145, 376 |
| Bme1390I | CCNGG | 3 cut(s) | 206, 258, 327 |
| Bme18I | GGWCC | 1 cut(s) | 202 |
| BmgT120I | GGNCC | 1 cut(s) | 202 |
| BmiI | GGNNCC | 1 cut(s) | 276 |
| BmrFI | CCNGG | 3 cut(s) | 206, 258, 327 |
| BmsI | GCATC | 2 cut(s) | 80, 168 |
| BpmI | CTGGAG | 1 cut(s) | 240 |
| BpuMI | CCSGG | 1 cut(s) | 327 |
| BsaAI | YACGTR | 1 cut(s) | 23 |
| BsaJI | CCNNGG | 3 cut(s) | 205, 257, 326 |
| BsaWI | WCCGGW | 1 cut(s) | 148 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 416, 446 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 327, 328 |
| BseBI | CCWGG | 2 cut(s) | 206, 258 |
| BseDI | CCNNGG | 3 cut(s) | 205, 257, 326 |
| BseGI | GGATG | 1 cut(s) | 13 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 327, 328 |
| BseMII | CTCAG | 1 cut(s) | 461 |
| BseRI | GAGGAG | 1 cut(s) | 437 |
| BseXI | GCAGC | 1 cut(s) | 130 |
| Bsh1236I | CGCG | 1 cut(s) | 76 |
| Bsh1285I | CGRYCG | 1 cut(s) | 44 |
| BshFI | GGCC | 1 cut(s) | 185 |
| BsiEI | CGRYCG | 1 cut(s) | 44 |
| BsiHKAI | GWGCWC | 1 cut(s) | 550 |
| BsiSI | CCGG | 2 cut(s) | 149, 326 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 327, 328 |
| BsnI | GGCC | 1 cut(s) | 185 |
| Bsp1286I | GDGCHC | 1 cut(s) | 550 |
| Bsp143I | GATC | 3 cut(s) | 29, 41, 62 |
| BspACI | CCGC | 1 cut(s) | 374 |
| BspANI | GGCC | 1 cut(s) | 185 |
| BspCNI | CTCAG | 1 cut(s) | 462 |
| BspFNI | CGCG | 1 cut(s) | 76 |
| BspLI | GGNNCC | 1 cut(s) | 276 |
| BspPI | GGATC | 1 cut(s) | 24 |
| BspTI | CTTAAG | 1 cut(s) | 557 |
| BssECI | CCNNGG | 3 cut(s) | 205, 257, 326 |
| BssMI | GATC | 3 cut(s) | 29, 41, 62 |
| BssSI | CACGAG | 1 cut(s) | 167 |
| Bst2BI | CACGAG | 1 cut(s) | 167 |
| Bst2UI | CCWGG | 2 cut(s) | 206, 258 |
| Bst4CI | ACNGT | 3 cut(s) | 19, 112, 127 |
| BstAFI | CTTAAG | 1 cut(s) | 557 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 178, 545 |
| BstBAI | YACGTR | 1 cut(s) | 23 |
| BstC8I | GCNNGC | 2 cut(s) | 183, 546 |
| BstDEI | CTNAG | 2 cut(s) | 355, 470 |
| BstF5I | GGATG | 1 cut(s) | 13 |
| BstFNI | CGCG | 1 cut(s) | 76 |
| BstHHI | GCGC | 1 cut(s) | 502 |
| BstKTI | GATC | 3 cut(s) | 32, 44, 65 |
| BstMBI | GATC | 3 cut(s) | 29, 41, 62 |
| BstMCI | CGRYCG | 1 cut(s) | 44 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 178, 545 |
| BstNI | CCWGG | 2 cut(s) | 206, 258 |
| BstNSI | RCATGY | 1 cut(s) | 176 |
| BstSCI | CCNGG | 3 cut(s) | 204, 256, 325 |
| BstSFI | CTRYAG | 1 cut(s) | 441 |
| BstUI | CGCG | 1 cut(s) | 76 |
| BstV1I | GCAGC | 1 cut(s) | 130 |
| BstX2I | RGATCY | 1 cut(s) | 62 |
| BstYI | RGATCY | 1 cut(s) | 62 |
| BsuRI | GGCC | 1 cut(s) | 185 |
| BtgZI | GCGATG | 1 cut(s) | 57 |
| BtsCI | GGATG | 1 cut(s) | 13 |
| BtsIMutI | CAGTG | 2 cut(s) | 117, 522 |
| Cac8I | GCNNGC | 2 cut(s) | 183, 546 |
| CfoI | GCGC | 1 cut(s) | 502 |
| Cfr13I | GGNCC | 1 cut(s) | 202 |
| Csp6I | GTAC | 1 cut(s) | 20 |
| CviAII | CATG | 3 cut(s) | 173, 298, 553 |
| CviJI | RGCY | 9 cut(s) | 143, 185, 233, 277, 302, 361, 377, 478, 577 |
| CviKI_1 | RGCY | 9 cut(s) | 143, 185, 233, 277, 302, 361, 377, 478, 577 |
| CviQI | GTAC | 1 cut(s) | 20 |
| DdeI | CTNAG | 2 cut(s) | 355, 470 |
| DpnI | GATC | 3 cut(s) | 31, 43, 64 |
| DpnII | GATC | 3 cut(s) | 29, 41, 62 |
| Eco47I | GGWCC | 1 cut(s) | 202 |
| Eco57I | CTGAAG | 2 cut(s) | 20, 309 |
| EcoRI | GAATTC | 2 cut(s) | 82, 196 |
| EcoRII | CCWGG | 2 cut(s) | 204, 256 |
| EcoT22I | ATGCAT | 1 cut(s) | 73 |
| FaeI | CATG | 3 cut(s) | 176, 301, 556 |
| FaiI | YATR | 6 cut(s) | 174, 299, 372, 419, 554, 573 |
| FatI | CATG | 3 cut(s) | 172, 297, 552 |
| Fnu4HI | GCNGC | 2 cut(s) | 144, 375 |
| FokI | GGATG | 1 cut(s) | 20 |
| Fsp4HI | GCNGC | 2 cut(s) | 144, 375 |
| FspBI | CTAG | 1 cut(s) | 495 |
| GlaI | GCGC | 1 cut(s) | 501 |
| GluI | GCNGC | 2 cut(s) | 144, 375 |
| GsuI | CTGGAG | 1 cut(s) | 240 |
| HaeIII | GGCC | 1 cut(s) | 185 |
| HapII | CCGG | 2 cut(s) | 149, 326 |
| HhaI | GCGC | 1 cut(s) | 502 |
| Hin1II | CATG | 3 cut(s) | 176, 301, 556 |
| Hin6I | GCGC | 1 cut(s) | 500 |
| HinP1I | GCGC | 1 cut(s) | 500 |
| HincII | GTYRAC | 2 cut(s) | 154, 215 |
| HindII | GTYRAC | 2 cut(s) | 154, 215 |
| HindIII | AAGCTT | 2 cut(s) | 476, 575 |
| HpaII | CCGG | 2 cut(s) | 149, 326 |
| HphI | GGTGA | 5 cut(s) | 205, 310, 323, 413, 440 |
| Hpy166II | GTNNAC | 3 cut(s) | 154, 215, 435 |
| Hpy188I | TCNGA | 4 cut(s) | 202, 226, 267, 289 |
| Hpy188III | TCNNGA | 1 cut(s) | 131 |
| Hpy8I | GTNNAC | 3 cut(s) | 154, 215, 435 |
| HpyAV | CCTTC | 2 cut(s) | 44, 372 |
| HpyCH4III | ACNGT | 3 cut(s) | 19, 112, 127 |
| HpyCH4IV | ACGT | 1 cut(s) | 22 |
| HpyCH4V | TGCA | 4 cut(s) | 11, 71, 181, 520 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 178, 545 |
| HpyF3I | CTNAG | 2 cut(s) | 355, 470 |
| HpySE526I | ACGT | 1 cut(s) | 22 |
| Hsp92II | CATG | 3 cut(s) | 176, 301, 556 |
| HspAI | GCGC | 1 cut(s) | 500 |
| Kzo9I | GATC | 3 cut(s) | 29, 41, 62 |
| LmnI | GCTCC | 3 cut(s) | 151, 274, 563 |
| Lsp1109I | GCAGC | 1 cut(s) | 130 |
| LweI | GCATC | 2 cut(s) | 80, 168 |
| MaeI | CTAG | 1 cut(s) | 495 |
| MaeII | ACGT | 1 cut(s) | 22 |
| MaeIII | GTNAC | 1 cut(s) | 316 |
| MalI | GATC | 3 cut(s) | 31, 43, 64 |
| MboI | GATC | 3 cut(s) | 29, 41, 62 |
| MboII | GAAGA | 2 cut(s) | 72, 106 |
| MflI | RGATCY | 1 cut(s) | 62 |
| MhlI | GDGCHC | 1 cut(s) | 550 |
| MluCI | AATT | 4 cut(s) | 82, 196, 218, 396 |
| MmeI | TCCRAC | 1 cut(s) | 435 |
| MnlI | CCTC | 9 cut(s) | 244, 264, 295, 331, 333, 397, 415, 418, 465 |
| Mph1103I | ATGCAT | 1 cut(s) | 73 |
| MseI | TTAA | 3 cut(s) | 395, 558, 583 |
| MslI | CAYNNNNRTG | 1 cut(s) | 171 |
| MspCI | CTTAAG | 1 cut(s) | 557 |
| MspI | CCGG | 2 cut(s) | 149, 326 |
| MspR9I | CCNGG | 3 cut(s) | 206, 258, 327 |
| MvaI | CCWGG | 2 cut(s) | 206, 258 |
| MvnI | CGCG | 1 cut(s) | 76 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 178, 545 |
| NciI | CCSGG | 1 cut(s) | 327 |
| NdeII | GATC | 3 cut(s) | 29, 41, 62 |
| NlaIII | CATG | 3 cut(s) | 176, 301, 556 |
| NlaIV | GGNNCC | 1 cut(s) | 276 |
| NmuCI | GTSAC | 1 cut(s) | 316 |
| NsiI | ATGCAT | 1 cut(s) | 73 |
| NspI | RCATGY | 1 cut(s) | 176 |
| PkrI | GCNGC | 2 cut(s) | 145, 376 |
| Ple19I | CGATCG | 1 cut(s) | 44 |
| Ppu21I | YACGTR | 1 cut(s) | 23 |
| Psp6I | CCWGG | 2 cut(s) | 204, 256 |
| PspGI | CCWGG | 2 cut(s) | 204, 256 |
| PspN4I | GGNNCC | 1 cut(s) | 276 |
| PspPI | GGNCC | 1 cut(s) | 202 |
| PsuI | RGATCY | 1 cut(s) | 62 |
| PvuI | CGATCG | 1 cut(s) | 44 |
| RsaI | GTAC | 1 cut(s) | 21 |
| RsaNI | GTAC | 1 cut(s) | 20 |
| RseI | CAYNNNNRTG | 1 cut(s) | 171 |
| SaqAI | TTAA | 3 cut(s) | 395, 558, 583 |
| SatI | GCNGC | 2 cut(s) | 144, 375 |
| Sau3AI | GATC | 3 cut(s) | 29, 41, 62 |
| Sau96I | GGNCC | 1 cut(s) | 202 |
| ScrFI | CCNGG | 3 cut(s) | 206, 258, 327 |
| SduI | GDGCHC | 1 cut(s) | 550 |
| SfaNI | GCATC | 2 cut(s) | 80, 168 |
| SfcI | CTRYAG | 1 cut(s) | 441 |
| SinI | GGWCC | 1 cut(s) | 202 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 171 |
| SmlI | CTYRAG | 1 cut(s) | 557 |
| SmoI | CTYRAG | 1 cut(s) | 557 |
| Sse9I | AATT | 4 cut(s) | 82, 196, 218, 396 |
| SsiI | CCGC | 1 cut(s) | 374 |
| SspMI | CTAG | 1 cut(s) | 495 |
| StyD4I | CCNGG | 3 cut(s) | 204, 256, 325 |
| TaaI | ACNGT | 3 cut(s) | 19, 112, 127 |
| TaiI | ACGT | 1 cut(s) | 25 |
| TaqI | TCGA | 2 cut(s) | 28, 44 |
| TasI | AATT | 4 cut(s) | 82, 196, 218, 396 |
| TauI | GCSGC | 1 cut(s) | 377 |
| Tru1I | TTAA | 3 cut(s) | 395, 558, 583 |
| Tru9I | TTAA | 3 cut(s) | 395, 558, 583 |
| TscAI | CASTG | 2 cut(s) | 117, 522 |
| TseFI | GTSAC | 1 cut(s) | 316 |
| TseI | GCWGC | 1 cut(s) | 143 |
| Tsp45I | GTSAC | 1 cut(s) | 316 |
| TspRI | CASTG | 2 cut(s) | 117, 522 |
| Vha464I | CTTAAG | 1 cut(s) | 557 |
| VpaK11BI | GGWCC | 1 cut(s) | 202 |
| XapI | RAATTY | 2 cut(s) | 82, 196 |
| XceI | RCATGY | 1 cut(s) | 176 |
| XspI | CTAG | 1 cut(s) | 495 |
| Zsp2I | ATGCAT | 1 cut(s) | 73 |