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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 259 |
| Acc36I | ACCTGC | 1 cut(s) | 259 |
| AciI | CCGC | 2 cut(s) | 180, 458 |
| AcuI | CTGAAG | 1 cut(s) | 290 |
| AfaI | GTAC | 2 cut(s) | 235, 246 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 254, 296, 335, 348 |
| AgsI | TTSAA | 1 cut(s) | 386 |
| AjnI | CCWGG | 1 cut(s) | 291 |
| AluBI | AGCT | 5 cut(s) | 128, 148, 223, 431, 482 |
| AluI | AGCT | 5 cut(s) | 128, 148, 223, 431, 482 |
| Alw26I | GTCTC | 1 cut(s) | 445 |
| AoxI | GGCC | 1 cut(s) | 16 |
| ApeKI | GCWGC | 2 cut(s) | 145, 265 |
| AspS9I | GGNCC | 1 cut(s) | 17 |
| AsuHPI | GGTGA | 4 cut(s) | 23, 30, 311, 416 |
| BbvI | GCAGC | 2 cut(s) | 157, 252 |
| BccI | CCATC | 3 cut(s) | 2, 62, 211 |
| BciT130I | CCWGG | 1 cut(s) | 293 |
| BcoDI | GTCTC | 1 cut(s) | 445 |
| BfaI | CTAG | 1 cut(s) | 210 |
| BfmI | CTRYAG | 1 cut(s) | 266 |
| BfuAI | ACCTGC | 1 cut(s) | 259 |
| BisI | GCNGC | 3 cut(s) | 146, 266, 459 |
| BlsI | GCNGC | 3 cut(s) | 147, 267, 460 |
| BmcAI | AGTACT | 1 cut(s) | 235 |
| Bme1390I | CCNGG | 1 cut(s) | 293 |
| BmgT120I | GGNCC | 1 cut(s) | 17 |
| BmiI | GGNNCC | 2 cut(s) | 288, 340 |
| BmrFI | CCNGG | 1 cut(s) | 293 |
| BpuEI | CTTGAG | 1 cut(s) | 176 |
| BsaJI | CCNNGG | 2 cut(s) | 291, 342 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 392, 422 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 254, 296, 335, 348 |
| BseBI | CCWGG | 1 cut(s) | 293 |
| BseDI | CCNNGG | 2 cut(s) | 291, 342 |
| BseGI | GGATG | 3 cut(s) | 73, 222, 397 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 254, 296, 335, 348 |
| BseRI | GAGGAG | 1 cut(s) | 351 |
| BseXI | GCAGC | 2 cut(s) | 157, 252 |
| BsgI | GTGCAG | 1 cut(s) | 50 |
| BshFI | GGCC | 1 cut(s) | 18 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 254, 296, 335, 348 |
| BsmAI | GTCTC | 1 cut(s) | 445 |
| BsnI | GGCC | 1 cut(s) | 18 |
| Bsp143I | GATC | 1 cut(s) | 301 |
| BspACI | CCGC | 2 cut(s) | 180, 458 |
| BspANI | GGCC | 1 cut(s) | 18 |
| BspHI | TCATGA | 1 cut(s) | 58 |
| BspLI | GGNNCC | 2 cut(s) | 288, 340 |
| BspMAI | CTGCAG | 1 cut(s) | 270 |
| BspMI | ACCTGC | 1 cut(s) | 259 |
| BssECI | CCNNGG | 2 cut(s) | 291, 342 |
| BssMI | GATC | 1 cut(s) | 301 |
| Bst2UI | CCWGG | 1 cut(s) | 293 |
| Bst4CI | ACNGT | 2 cut(s) | 238, 415 |
| Bst6I | CTCTTC | 1 cut(s) | 443 |
| BstDSI | CCRYGG | 1 cut(s) | 342 |
| BstF5I | GGATG | 3 cut(s) | 73, 222, 397 |
| BstKTI | GATC | 1 cut(s) | 304 |
| BstMAI | GTCTC | 1 cut(s) | 445 |
| BstMBI | GATC | 1 cut(s) | 301 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 464 |
| BstNI | CCWGG | 1 cut(s) | 293 |
| BstSCI | CCNGG | 1 cut(s) | 291 |
| BstSFI | CTRYAG | 1 cut(s) | 266 |
| BstV1I | GCAGC | 2 cut(s) | 157, 252 |
| BsuRI | GGCC | 1 cut(s) | 18 |
| BtgI | CCRYGG | 1 cut(s) | 342 |
| BtsCI | GGATG | 3 cut(s) | 73, 222, 397 |
| BtsIMutI | CAGTG | 2 cut(s) | 170, 420 |
| BveI | ACCTGC | 1 cut(s) | 259 |
| CciI | TCATGA | 1 cut(s) | 58 |
| Cfr13I | GGNCC | 1 cut(s) | 17 |
| CseI | GACGC | 1 cut(s) | 176 |
| Csp6I | GTAC | 2 cut(s) | 234, 245 |
| CviAII | CATG | 2 cut(s) | 59, 196 |
| CviQI | GTAC | 2 cut(s) | 234, 245 |
| DpnI | GATC | 1 cut(s) | 303 |
| DpnII | GATC | 1 cut(s) | 301 |
| Eam1104I | CTCTTC | 1 cut(s) | 443 |
| EarI | CTCTTC | 1 cut(s) | 443 |
| Eco57I | CTGAAG | 1 cut(s) | 290 |
| EcoO109I | RGGNCCY | 1 cut(s) | 17 |
| EcoRII | CCWGG | 1 cut(s) | 291 |
| FaeI | CATG | 2 cut(s) | 62, 199 |
| FaiI | YATR | 4 cut(s) | 60, 197, 486, 488 |
| FatI | CATG | 2 cut(s) | 58, 195 |
| Fnu4HI | GCNGC | 3 cut(s) | 146, 266, 459 |
| FokI | GGATG | 3 cut(s) | 80, 229, 404 |
| Fsp4HI | GCNGC | 3 cut(s) | 146, 266, 459 |
| FspBI | CTAG | 1 cut(s) | 210 |
| GluI | GCNGC | 3 cut(s) | 146, 266, 459 |
| HaeIII | GGCC | 1 cut(s) | 18 |
| HgaI | GACGC | 1 cut(s) | 176 |
| Hin1II | CATG | 2 cut(s) | 62, 199 |
| HindIII | AAGCTT | 1 cut(s) | 480 |
| HphI | GGTGA | 4 cut(s) | 23, 30, 311, 416 |
| Hpy166II | GTNNAC | 3 cut(s) | 133, 245, 411 |
| Hpy188I | TCNGA | 1 cut(s) | 187 |
| Hpy188III | TCNNGA | 4 cut(s) | 59, 155, 308, 398 |
| Hpy8I | GTNNAC | 3 cut(s) | 133, 245, 411 |
| HpyAV | CCTTC | 3 cut(s) | 8, 30, 182 |
| HpyCH4III | ACNGT | 2 cut(s) | 238, 415 |
| HpyCH4V | TGCA | 5 cut(s) | 31, 145, 195, 260, 268 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 464 |
| Hsp92II | CATG | 2 cut(s) | 62, 199 |
| Kzo9I | GATC | 1 cut(s) | 301 |
| LmnI | GCTCC | 2 cut(s) | 220, 338 |
| LpnPI | CCDG | 9 cut(s) | 35, 209, 254, 278, 293, 305, 328, 383, 458 |
| Lsp1109I | GCAGC | 2 cut(s) | 157, 252 |
| MaeI | CTAG | 1 cut(s) | 210 |
| MaeIII | GTNAC | 1 cut(s) | 36 |
| MalI | GATC | 1 cut(s) | 303 |
| MboI | GATC | 1 cut(s) | 301 |
| MboII | GAAGA | 3 cut(s) | 296, 460, 483 |
| MfeI | CAATTG | 1 cut(s) | 42 |
| MluCI | AATT | 2 cut(s) | 42, 381 |
| MmeI | TCCRAC | 1 cut(s) | 495 |
| MnlI | CCTC | 9 cut(s) | 109, 157, 162, 199, 247, 311, 329, 341, 394 |
| MspA1I | CMGCKG | 1 cut(s) | 128 |
| MspR9I | CCNGG | 1 cut(s) | 293 |
| MunI | CAATTG | 1 cut(s) | 42 |
| MvaI | CCWGG | 1 cut(s) | 293 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 464 |
| NdeII | GATC | 1 cut(s) | 301 |
| NlaIII | CATG | 2 cut(s) | 62, 199 |
| NlaIV | GGNNCC | 2 cut(s) | 288, 340 |
| NmuCI | GTSAC | 1 cut(s) | 36 |
| PagI | TCATGA | 1 cut(s) | 58 |
| PaqCI | CACCTGC | 1 cut(s) | 259 |
| PkrI | GCNGC | 3 cut(s) | 147, 267, 460 |
| Psp6I | CCWGG | 1 cut(s) | 291 |
| PspGI | CCWGG | 1 cut(s) | 291 |
| PspN4I | GGNNCC | 2 cut(s) | 288, 340 |
| PspPI | GGNCC | 1 cut(s) | 17 |
| PstI | CTGCAG | 1 cut(s) | 270 |
| PvuII | CAGCTG | 1 cut(s) | 128 |
| RsaI | GTAC | 2 cut(s) | 235, 246 |
| RsaNI | GTAC | 2 cut(s) | 234, 245 |
| SatI | GCNGC | 3 cut(s) | 146, 266, 459 |
| Sau3AI | GATC | 1 cut(s) | 301 |
| Sau96I | GGNCC | 1 cut(s) | 17 |
| ScaI | AGTACT | 1 cut(s) | 235 |
| ScrFI | CCNGG | 1 cut(s) | 293 |
| SfcI | CTRYAG | 1 cut(s) | 266 |
| SmlI | CTYRAG | 1 cut(s) | 155 |
| SmoI | CTYRAG | 1 cut(s) | 155 |
| Sse9I | AATT | 2 cut(s) | 42, 381 |
| SsiI | CCGC | 2 cut(s) | 180, 458 |
| SspMI | CTAG | 1 cut(s) | 210 |
| StyD4I | CCNGG | 1 cut(s) | 291 |
| TaaI | ACNGT | 2 cut(s) | 238, 415 |
| TasI | AATT | 2 cut(s) | 42, 381 |
| TatI | WGTACW | 1 cut(s) | 233 |
| TauI | GCSGC | 1 cut(s) | 461 |
| TscAI | CASTG | 2 cut(s) | 177, 420 |
| TseFI | GTSAC | 1 cut(s) | 36 |
| TseI | GCWGC | 2 cut(s) | 145, 265 |
| Tsp45I | GTSAC | 1 cut(s) | 36 |
| TspDTI | ATGAA | 2 cut(s) | 393, 483 |
| TspGWI | ACGGA | 1 cut(s) | 80 |
| TspRI | CASTG | 2 cut(s) | 177, 420 |
| XspI | CTAG | 1 cut(s) | 210 |
| ZrmI | AGTACT | 1 cut(s) | 235 |