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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 281 |
| Acc36I | ACCTGC | 1 cut(s) | 281 |
| AccBSI | CCGCTC | 1 cut(s) | 38 |
| AciI | CCGC | 2 cut(s) | 36, 137 |
| AclWI | GGATC | 1 cut(s) | 33 |
| AcoI | YGGCCR | 1 cut(s) | 319 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 375, 376, 377 |
| AgsI | TTSAA | 3 cut(s) | 131, 203, 388 |
| AhlI | ACTAGT | 1 cut(s) | 314 |
| AluBI | AGCT | 1 cut(s) | 234 |
| AluI | AGCT | 1 cut(s) | 234 |
| Alw21I | GWGCWC | 1 cut(s) | 236 |
| Alw26I | GTCTC | 1 cut(s) | 149 |
| AlwI | GGATC | 1 cut(s) | 33 |
| AoxI | GGCC | 1 cut(s) | 319 |
| ApeKI | GCWGC | 1 cut(s) | 287 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 255 |
| AspA2I | CCTAGG | 2 cut(s) | 68, 374 |
| AspS9I | GGNCC | 1 cut(s) | 73 |
| AsuHPI | GGTGA | 1 cut(s) | 305 |
| AvaII | GGWCC | 1 cut(s) | 73 |
| AvrII | CCTAGG | 2 cut(s) | 68, 374 |
| BalI | TGGCCA | 1 cut(s) | 321 |
| BanII | GRGCYC | 1 cut(s) | 236 |
| BbsI | GAAGAC | 1 cut(s) | 345 |
| Bbv12I | GWGCWC | 1 cut(s) | 236 |
| BbvI | GCAGC | 1 cut(s) | 299 |
| BccI | CCATC | 1 cut(s) | 356 |
| BcoDI | GTCTC | 1 cut(s) | 149 |
| BcuI | ACTAGT | 1 cut(s) | 314 |
| BfaI | CTAG | 3 cut(s) | 69, 315, 375 |
| BfuAI | ACCTGC | 1 cut(s) | 281 |
| BisI | GCNGC | 3 cut(s) | 36, 138, 288 |
| BlnI | CCTAGG | 2 cut(s) | 68, 374 |
| BlsI | GCNGC | 3 cut(s) | 37, 139, 289 |
| Bme18I | GGWCC | 1 cut(s) | 73 |
| BmgT120I | GGNCC | 1 cut(s) | 73 |
| BmiI | GGNNCC | 3 cut(s) | 74, 183, 367 |
| BpiI | GAAGAC | 1 cut(s) | 345 |
| BpuEI | CTTGAG | 2 cut(s) | 250, 281 |
| BsaJI | CCNNGG | 3 cut(s) | 68, 237, 374 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 218, 248 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 375, 376, 377 |
| Bse1I | ACTGG | 1 cut(s) | 358 |
| BseDI | CCNNGG | 3 cut(s) | 68, 237, 374 |
| BseGI | GGATG | 2 cut(s) | 151, 229 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 375, 376, 377 |
| BseMII | CTCAG | 2 cut(s) | 122, 324 |
| BseNI | ACTGG | 1 cut(s) | 358 |
| BseRI | GAGGAG | 3 cut(s) | 194, 226, 278 |
| BseXI | GCAGC | 1 cut(s) | 299 |
| BseYI | CCCAGC | 1 cut(s) | 165 |
| BshFI | GGCC | 1 cut(s) | 321 |
| BsiHKAI | GWGCWC | 1 cut(s) | 236 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 375, 376, 377 |
| BsmAI | GTCTC | 1 cut(s) | 149 |
| BsnI | GGCC | 1 cut(s) | 321 |
| Bsp1286I | GDGCHC | 1 cut(s) | 236 |
| Bsp143I | GATC | 1 cut(s) | 25 |
| BspACI | CCGC | 2 cut(s) | 36, 137 |
| BspANI | GGCC | 1 cut(s) | 321 |
| BspCNI | CTCAG | 2 cut(s) | 121, 325 |
| BspHI | TCATGA | 1 cut(s) | 55 |
| BspLI | GGNNCC | 3 cut(s) | 74, 183, 367 |
| BspMI | ACCTGC | 1 cut(s) | 281 |
| BspPI | GGATC | 1 cut(s) | 33 |
| BsrBI | CCGCTC | 1 cut(s) | 38 |
| BsrI | ACTGG | 1 cut(s) | 358 |
| BssECI | CCNNGG | 3 cut(s) | 68, 237, 374 |
| BssMI | GATC | 1 cut(s) | 25 |
| BssT1I | CCWWGG | 2 cut(s) | 68, 374 |
| Bst4CI | ACNGT | 2 cut(s) | 52, 124 |
| Bst6I | CTCTTC | 1 cut(s) | 126 |
| BstC8I | GCNNGC | 1 cut(s) | 395 |
| BstDEI | CTNAG | 2 cut(s) | 108, 333 |
| BstF5I | GGATG | 2 cut(s) | 151, 229 |
| BstKTI | GATC | 1 cut(s) | 28 |
| BstMAI | GTCTC | 1 cut(s) | 149 |
| BstMBI | GATC | 1 cut(s) | 25 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 113 |
| BstNSI | RCATGY | 1 cut(s) | 35 |
| BstV1I | GCAGC | 1 cut(s) | 299 |
| BstV2I | GAAGAC | 1 cut(s) | 345 |
| BsuRI | GGCC | 1 cut(s) | 321 |
| BtsCI | GGATG | 2 cut(s) | 151, 229 |
| BveI | ACCTGC | 1 cut(s) | 281 |
| Cac8I | GCNNGC | 1 cut(s) | 395 |
| CciI | TCATGA | 1 cut(s) | 55 |
| Cfr13I | GGNCC | 1 cut(s) | 73 |
| CviAII | CATG | 3 cut(s) | 32, 56, 323 |
| CviJI | RGCY | 4 cut(s) | 140, 184, 234, 321 |
| CviKI_1 | RGCY | 4 cut(s) | 140, 184, 234, 321 |
| DdeI | CTNAG | 2 cut(s) | 108, 333 |
| DpnI | GATC | 1 cut(s) | 27 |
| DpnII | GATC | 1 cut(s) | 25 |
| EaeI | YGGCCR | 1 cut(s) | 319 |
| Eam1104I | CTCTTC | 1 cut(s) | 126 |
| EarI | CTCTTC | 1 cut(s) | 126 |
| Ecl136II | GAGCTC | 1 cut(s) | 234 |
| Eco130I | CCWWGG | 2 cut(s) | 68, 374 |
| Eco24I | GRGCYC | 1 cut(s) | 236 |
| Eco47I | GGWCC | 1 cut(s) | 73 |
| Eco53kI | GAGCTC | 1 cut(s) | 234 |
| EcoICRI | GAGCTC | 1 cut(s) | 234 |
| EcoT14I | CCWWGG | 2 cut(s) | 68, 374 |
| EcoT38I | GRGCYC | 1 cut(s) | 236 |
| ErhI | CCWWGG | 2 cut(s) | 68, 374 |
| FaeI | CATG | 3 cut(s) | 35, 59, 326 |
| FaiI | YATR | 3 cut(s) | 33, 57, 324 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 212, 244 |
| FatI | CATG | 3 cut(s) | 31, 55, 322 |
| Fnu4HI | GCNGC | 3 cut(s) | 36, 138, 288 |
| FokI | GGATG | 2 cut(s) | 158, 236 |
| FriOI | GRGCYC | 1 cut(s) | 236 |
| Fsp4HI | GCNGC | 3 cut(s) | 36, 138, 288 |
| FspBI | CTAG | 3 cut(s) | 69, 315, 375 |
| GluI | GCNGC | 3 cut(s) | 36, 138, 288 |
| GsaI | CCCAGC | 1 cut(s) | 169 |
| HaeIII | GGCC | 1 cut(s) | 321 |
| Hin1II | CATG | 3 cut(s) | 35, 59, 326 |
| HincII | GTYRAC | 1 cut(s) | 300 |
| HindII | GTYRAC | 1 cut(s) | 300 |
| HinfI | GANTC | 1 cut(s) | 62 |
| HphI | GGTGA | 1 cut(s) | 305 |
| Hpy166II | GTNNAC | 1 cut(s) | 300 |
| Hpy188I | TCNGA | 3 cut(s) | 48, 85, 241 |
| Hpy188III | TCNNGA | 3 cut(s) | 56, 260, 278 |
| Hpy8I | GTNNAC | 1 cut(s) | 300 |
| HpyAV | CCTTC | 1 cut(s) | 214 |
| HpyCH4III | ACNGT | 2 cut(s) | 52, 124 |
| HpyCH4V | TGCA | 5 cut(s) | 116, 215, 287, 348, 393 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 113 |
| HpyF3I | CTNAG | 2 cut(s) | 108, 333 |
| Hsp92II | CATG | 3 cut(s) | 35, 59, 326 |
| Kzo9I | GATC | 1 cut(s) | 25 |
| LmnI | GCTCC | 4 cut(s) | 43, 181, 239, 265 |
| LpnPI | CCDG | 4 cut(s) | 179, 263, 276, 339 |
| Lsp1109I | GCAGC | 1 cut(s) | 299 |
| MaeI | CTAG | 3 cut(s) | 69, 315, 375 |
| MaeIII | GTNAC | 1 cut(s) | 16 |
| MalI | GATC | 1 cut(s) | 27 |
| MbiI | CCGCTC | 1 cut(s) | 38 |
| MboI | GATC | 1 cut(s) | 25 |
| MboII | GAAGA | 3 cut(s) | 72, 143, 350 |
| MhlI | GDGCHC | 1 cut(s) | 236 |
| MlsI | TGGCCA | 1 cut(s) | 321 |
| MluCI | AATT | 3 cut(s) | 92, 102, 382 |
| MluNI | TGGCCA | 1 cut(s) | 321 |
| MlyI | GAGTC | 1 cut(s) | 56 |
| MmeI | TCCRAC | 1 cut(s) | 65 |
| MnlI | CCTC | 6 cut(s) | 127, 172, 247, 256, 328, 381 |
| Mox20I | TGGCCA | 1 cut(s) | 321 |
| MroXI | GAANNNNTTC | 1 cut(s) | 255 |
| MscI | TGGCCA | 1 cut(s) | 321 |
| MseI | TTAA | 1 cut(s) | 329 |
| Msp20I | TGGCCA | 1 cut(s) | 321 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 113 |
| NdeII | GATC | 1 cut(s) | 25 |
| NlaIII | CATG | 3 cut(s) | 35, 59, 326 |
| NlaIV | GGNNCC | 3 cut(s) | 74, 183, 367 |
| NspI | RCATGY | 1 cut(s) | 35 |
| PagI | TCATGA | 1 cut(s) | 55 |
| PaqCI | CACCTGC | 1 cut(s) | 281 |
| PdmI | GAANNNNTTC | 1 cut(s) | 255 |
| PkrI | GCNGC | 3 cut(s) | 37, 139, 289 |
| PleI | GAGTC | 1 cut(s) | 56 |
| PpsI | GAGTC | 1 cut(s) | 56 |
| Psp124BI | GAGCTC | 1 cut(s) | 236 |
| PspFI | CCCAGC | 1 cut(s) | 165 |
| PspN4I | GGNNCC | 3 cut(s) | 74, 183, 367 |
| PspPI | GGNCC | 1 cut(s) | 73 |
| SacI | GAGCTC | 1 cut(s) | 236 |
| SaqAI | TTAA | 1 cut(s) | 329 |
| SatI | GCNGC | 3 cut(s) | 36, 138, 288 |
| Sau3AI | GATC | 1 cut(s) | 25 |
| Sau96I | GGNCC | 1 cut(s) | 73 |
| SchI | GAGTC | 1 cut(s) | 56 |
| SduI | GDGCHC | 1 cut(s) | 236 |
| SetI | ASST | 2 cut(s) | 236, 295 |
| SinI | GGWCC | 1 cut(s) | 73 |
| SmlI | CTYRAG | 2 cut(s) | 229, 260 |
| SmoI | CTYRAG | 2 cut(s) | 229, 260 |
| SpeI | ACTAGT | 1 cut(s) | 314 |
| Sse9I | AATT | 3 cut(s) | 92, 102, 382 |
| SsiI | CCGC | 2 cut(s) | 36, 137 |
| SspI | AATATT | 1 cut(s) | 199 |
| SspMI | CTAG | 3 cut(s) | 69, 315, 375 |
| SstI | GAGCTC | 1 cut(s) | 236 |
| StyI | CCWWGG | 2 cut(s) | 68, 374 |
| TaaI | ACNGT | 2 cut(s) | 52, 124 |
| TasI | AATT | 3 cut(s) | 92, 102, 382 |
| TauI | GCSGC | 2 cut(s) | 38, 140 |
| Tru1I | TTAA | 1 cut(s) | 329 |
| Tru9I | TTAA | 1 cut(s) | 329 |
| TseI | GCWGC | 1 cut(s) | 287 |
| TspDTI | ATGAA | 3 cut(s) | 24, 44, 162 |
| VpaK11BI | GGWCC | 1 cut(s) | 73 |
| XceI | RCATGY | 1 cut(s) | 35 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 350 |
| XmaJI | CCTAGG | 2 cut(s) | 68, 374 |
| XmnI | GAANNNNTTC | 1 cut(s) | 255 |
| XspI | CTAG | 3 cut(s) | 69, 315, 375 |