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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 72 |
| AcoI | YGGCCR | 1 cut(s) | 235 |
| AcsI | RAATTY | 1 cut(s) | 279 |
| AcyI | GRCGYC | 1 cut(s) | 256 |
| AfaI | GTAC | 1 cut(s) | 442 |
| AflIII | ACRYGT | 1 cut(s) | 182 |
| AgsI | TTSAA | 5 cut(s) | 149, 197, 290, 365, 507 |
| AjnI | CCWGG | 1 cut(s) | 171 |
| AluBI | AGCT | 4 cut(s) | 230, 272, 469, 501 |
| AluI | AGCT | 4 cut(s) | 230, 272, 469, 501 |
| Alw26I | GTCTC | 3 cut(s) | 164, 212, 396 |
| AoxI | GGCC | 1 cut(s) | 235 |
| ApeKI | GCWGC | 1 cut(s) | 469 |
| ApoI | RAATTY | 1 cut(s) | 279 |
| AspLEI | GCGC | 1 cut(s) | 6 |
| AspS9I | GGNCC | 1 cut(s) | 371 |
| AsuC2I | CCSGG | 1 cut(s) | 253 |
| AsuHPI | GGTGA | 1 cut(s) | 461 |
| AvaII | GGWCC | 1 cut(s) | 371 |
| BauI | CACGAG | 1 cut(s) | 231 |
| BbvI | GCAGC | 1 cut(s) | 456 |
| BccI | CCATC | 1 cut(s) | 403 |
| BceAI | ACGGC | 1 cut(s) | 222 |
| BciT130I | CCWGG | 1 cut(s) | 173 |
| BcnI | CCSGG | 1 cut(s) | 253 |
| BcoDI | GTCTC | 3 cut(s) | 164, 212, 396 |
| BfaI | CTAG | 3 cut(s) | 54, 384, 498 |
| BisI | GCNGC | 1 cut(s) | 470 |
| BlpI | GCTNAGC | 1 cut(s) | 273 |
| BlsI | GCNGC | 1 cut(s) | 471 |
| Bme1390I | CCNGG | 2 cut(s) | 173, 253 |
| Bme18I | GGWCC | 1 cut(s) | 371 |
| BmgT120I | GGNCC | 1 cut(s) | 371 |
| BmrFI | CCNGG | 2 cut(s) | 173, 253 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 273 |
| BpuEI | CTTGAG | 1 cut(s) | 233 |
| BpuMI | CCSGG | 1 cut(s) | 253 |
| BsaHI | GRCGYC | 1 cut(s) | 256 |
| BsaI | GGTCTC | 1 cut(s) | 212 |
| BsaJI | CCNNGG | 2 cut(s) | 171, 251 |
| Bse118I | RCCGGY | 1 cut(s) | 119 |
| Bse1I | ACTGG | 1 cut(s) | 448 |
| BseBI | CCWGG | 1 cut(s) | 173 |
| BseDI | CCNNGG | 2 cut(s) | 171, 251 |
| BseMII | CTCAG | 1 cut(s) | 156 |
| BseNI | ACTGG | 1 cut(s) | 448 |
| BseRI | GAGGAG | 2 cut(s) | 78, 230 |
| BseXI | GCAGC | 1 cut(s) | 456 |
| BseYI | CCCAGC | 1 cut(s) | 485 |
| BshFI | GGCC | 1 cut(s) | 237 |
| BsiSI | CCGG | 2 cut(s) | 120, 253 |
| BslFI | GGGAC | 1 cut(s) | 154 |
| BsmAI | GTCTC | 3 cut(s) | 164, 212, 396 |
| BsmBI | CGTCTC | 1 cut(s) | 164 |
| BsmFI | GGGAC | 1 cut(s) | 154 |
| BsnI | GGCC | 1 cut(s) | 237 |
| Bso31I | GGTCTC | 1 cut(s) | 212 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 273 |
| BspANI | GGCC | 1 cut(s) | 237 |
| BspCNI | CTCAG | 1 cut(s) | 157 |
| BspTNI | GGTCTC | 1 cut(s) | 212 |
| BsrFI | RCCGGY | 1 cut(s) | 119 |
| BsrI | ACTGG | 1 cut(s) | 448 |
| BssAI | RCCGGY | 1 cut(s) | 119 |
| BssECI | CCNNGG | 2 cut(s) | 171, 251 |
| BssNI | GRCGYC | 1 cut(s) | 256 |
| BssSI | CACGAG | 1 cut(s) | 231 |
| Bst2BI | CACGAG | 1 cut(s) | 231 |
| Bst2UI | CCWGG | 1 cut(s) | 173 |
| Bst4CI | ACNGT | 3 cut(s) | 106, 266, 331 |
| BstACI | GRCGYC | 1 cut(s) | 256 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 469 |
| BstDEI | CTNAG | 2 cut(s) | 165, 273 |
| BstHHI | GCGC | 1 cut(s) | 6 |
| BstMAI | GTCTC | 3 cut(s) | 164, 212, 396 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 469 |
| BstNI | CCWGG | 1 cut(s) | 173 |
| BstNSI | RCATGY | 1 cut(s) | 186 |
| BstSCI | CCNGG | 2 cut(s) | 171, 251 |
| BstV1I | GCAGC | 1 cut(s) | 456 |
| BsuRI | GGCC | 1 cut(s) | 237 |
| BtgZI | GCGATG | 1 cut(s) | 365 |
| CfoI | GCGC | 1 cut(s) | 6 |
| Cfr10I | RCCGGY | 1 cut(s) | 119 |
| Cfr13I | GGNCC | 1 cut(s) | 371 |
| CseI | GACGC | 2 cut(s) | 146, 245 |
| Csp6I | GTAC | 1 cut(s) | 441 |
| CviAII | CATG | 4 cut(s) | 93, 183, 435, 464 |
| CviJI | RGCY | 6 cut(s) | 230, 237, 250, 272, 469, 501 |
| CviKI_1 | RGCY | 6 cut(s) | 230, 237, 250, 272, 469, 501 |
| CviQI | GTAC | 1 cut(s) | 441 |
| DdeI | CTNAG | 2 cut(s) | 165, 273 |
| EaeI | YGGCCR | 1 cut(s) | 235 |
| Eco31I | GGTCTC | 1 cut(s) | 212 |
| Eco47I | GGWCC | 1 cut(s) | 371 |
| EcoRII | CCWGG | 1 cut(s) | 171 |
| Esp3I | CGTCTC | 1 cut(s) | 164 |
| FaeI | CATG | 4 cut(s) | 96, 186, 438, 467 |
| FaiI | YATR | 9 cut(s) | 14, 94, 134, 153, 184, 206, 436, 465, 479 |
| FaqI | GGGAC | 1 cut(s) | 154 |
| FatI | CATG | 4 cut(s) | 92, 182, 434, 463 |
| FblI | GTMKAC | 1 cut(s) | 72 |
| Fnu4HI | GCNGC | 1 cut(s) | 470 |
| Fsp4HI | GCNGC | 1 cut(s) | 470 |
| FspBI | CTAG | 3 cut(s) | 54, 384, 498 |
| GlaI | GCGC | 1 cut(s) | 5 |
| GluI | GCNGC | 1 cut(s) | 470 |
| GsaI | CCCAGC | 1 cut(s) | 489 |
| HaeIII | GGCC | 1 cut(s) | 237 |
| HapII | CCGG | 2 cut(s) | 120, 253 |
| HgaI | GACGC | 2 cut(s) | 146, 245 |
| HhaI | GCGC | 1 cut(s) | 6 |
| Hin1I | GRCGYC | 1 cut(s) | 256 |
| Hin1II | CATG | 4 cut(s) | 96, 186, 438, 467 |
| Hin6I | GCGC | 1 cut(s) | 4 |
| HinP1I | GCGC | 1 cut(s) | 4 |
| HincII | GTYRAC | 1 cut(s) | 102 |
| HindII | GTYRAC | 1 cut(s) | 102 |
| HinfI | GANTC | 2 cut(s) | 167, 430 |
| HpaI | GTTAAC | 1 cut(s) | 102 |
| HpaII | CCGG | 2 cut(s) | 120, 253 |
| HphI | GGTGA | 1 cut(s) | 461 |
| Hpy166II | GTNNAC | 3 cut(s) | 35, 73, 102 |
| Hpy188III | TCNNGA | 1 cut(s) | 243 |
| Hpy8I | GTNNAC | 3 cut(s) | 35, 73, 102 |
| Hpy99I | CGWCG | 1 cut(s) | 261 |
| HpyAV | CCTTC | 1 cut(s) | 362 |
| HpyCH4III | ACNGT | 3 cut(s) | 106, 266, 331 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 469 |
| HpyF3I | CTNAG | 2 cut(s) | 165, 273 |
| Hsp92I | GRCGYC | 1 cut(s) | 256 |
| Hsp92II | CATG | 4 cut(s) | 96, 186, 438, 467 |
| HspAI | GCGC | 1 cut(s) | 4 |
| KspAI | GTTAAC | 1 cut(s) | 102 |
| LmnI | GCTCC | 1 cut(s) | 91 |
| LpnPI | CCDG | 9 cut(s) | 133, 158, 177, 185, 266, 312, 332, 429, 471 |
| Lsp1109I | GCAGC | 1 cut(s) | 456 |
| MaeI | CTAG | 3 cut(s) | 54, 384, 498 |
| MaeIII | GTNAC | 2 cut(s) | 325, 490 |
| MboII | GAAGA | 1 cut(s) | 377 |
| MluCI | AATT | 3 cut(s) | 15, 188, 279 |
| MlyI | GAGTC | 1 cut(s) | 176 |
| MnlI | CCTC | 5 cut(s) | 99, 118, 136, 208, 512 |
| MseI | TTAA | 1 cut(s) | 101 |
| MslI | CAYNNNNRTG | 1 cut(s) | 137 |
| MspI | CCGG | 2 cut(s) | 120, 253 |
| MspR9I | CCNGG | 2 cut(s) | 173, 253 |
| MvaI | CCWGG | 1 cut(s) | 173 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 469 |
| NciI | CCSGG | 1 cut(s) | 253 |
| NlaIII | CATG | 4 cut(s) | 96, 186, 438, 467 |
| NmuCI | GTSAC | 1 cut(s) | 325 |
| NspI | RCATGY | 1 cut(s) | 186 |
| PciI | ACATGT | 1 cut(s) | 182 |
| PfeI | GAWTC | 1 cut(s) | 430 |
| PkrI | GCNGC | 1 cut(s) | 471 |
| PleI | GAGTC | 1 cut(s) | 175 |
| PpsI | GAGTC | 1 cut(s) | 175 |
| PscI | ACATGT | 1 cut(s) | 182 |
| Psp6I | CCWGG | 1 cut(s) | 171 |
| PspFI | CCCAGC | 1 cut(s) | 485 |
| PspGI | CCWGG | 1 cut(s) | 171 |
| PspPI | GGNCC | 1 cut(s) | 371 |
| RsaI | GTAC | 1 cut(s) | 442 |
| RsaNI | GTAC | 1 cut(s) | 441 |
| RseI | CAYNNNNRTG | 1 cut(s) | 137 |
| SaqAI | TTAA | 1 cut(s) | 101 |
| SatI | GCNGC | 1 cut(s) | 470 |
| Sau96I | GGNCC | 1 cut(s) | 371 |
| SchI | GAGTC | 1 cut(s) | 176 |
| ScrFI | CCNGG | 2 cut(s) | 173, 253 |
| SetI | ASST | 8 cut(s) | 129, 147, 232, 274, 363, 373, 471, 503 |
| SinI | GGWCC | 1 cut(s) | 371 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 137 |
| SmlI | CTYRAG | 1 cut(s) | 212 |
| SmoI | CTYRAG | 1 cut(s) | 212 |
| Sse9I | AATT | 3 cut(s) | 15, 188, 279 |
| SspMI | CTAG | 3 cut(s) | 54, 384, 498 |
| StyD4I | CCNGG | 2 cut(s) | 171, 251 |
| TaaI | ACNGT | 3 cut(s) | 106, 266, 331 |
| TaqI | TCGA | 1 cut(s) | 244 |
| TaqII | GACCGA | 1 cut(s) | 236 |
| TasI | AATT | 3 cut(s) | 15, 188, 279 |
| TfiI | GAWTC | 1 cut(s) | 430 |
| Tru1I | TTAA | 1 cut(s) | 101 |
| Tru9I | TTAA | 1 cut(s) | 101 |
| TseFI | GTSAC | 1 cut(s) | 325 |
| TseI | GCWGC | 1 cut(s) | 469 |
| Tsp45I | GTSAC | 1 cut(s) | 325 |
| TspDTI | ATGAA | 2 cut(s) | 240, 368 |
| TspGWI | ACGGA | 1 cut(s) | 363 |
| VpaK11BI | GGWCC | 1 cut(s) | 371 |
| XapI | RAATTY | 1 cut(s) | 279 |
| XceI | RCATGY | 1 cut(s) | 186 |
| XmiI | GTMKAC | 1 cut(s) | 72 |
| XspI | CTAG | 3 cut(s) | 54, 384, 498 |