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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 704 |
| AccII | CGCG | 1 cut(s) | 307 |
| AciI | CCGC | 2 cut(s) | 161, 654 |
| AclWI | GGATC | 3 cut(s) | 89, 102, 624 |
| AcoI | YGGCCR | 1 cut(s) | 162 |
| AcuI | CTGAAG | 4 cut(s) | 54, 564, 753, 861 |
| AcyI | GRCGYC | 1 cut(s) | 752 |
| AfeI | AGCGCT | 1 cut(s) | 191 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 245 |
| AflII | CTTAAG | 1 cut(s) | 368 |
| AgsI | TTSAA | 3 cut(s) | 203, 491, 548 |
| AluBI | AGCT | 5 cut(s) | 74, 214, 222, 495, 578 |
| AluI | AGCT | 5 cut(s) | 74, 214, 222, 495, 578 |
| Alw26I | GTCTC | 1 cut(s) | 743 |
| AlwI | GGATC | 3 cut(s) | 89, 102, 624 |
| Aor51HI | AGCGCT | 1 cut(s) | 191 |
| AoxI | GGCC | 2 cut(s) | 162, 430 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 825 |
| AspLEI | GCGC | 3 cut(s) | 192, 271, 309 |
| AspS9I | GGNCC | 1 cut(s) | 431 |
| AsuC2I | CCSGG | 1 cut(s) | 566 |
| AsuHPI | GGTGA | 1 cut(s) | 370 |
| BamHI | GGATCC | 1 cut(s) | 94 |
| BanI | GGYRCC | 1 cut(s) | 704 |
| BanII | GRGCYC | 1 cut(s) | 661 |
| BauI | CACGAG | 1 cut(s) | 207 |
| BbsI | GAAGAC | 1 cut(s) | 741 |
| BbvCI | CCTCAGC | 1 cut(s) | 834 |
| BccI | CCATC | 2 cut(s) | 463, 668 |
| BceAI | ACGGC | 1 cut(s) | 73 |
| BcnI | CCSGG | 1 cut(s) | 566 |
| BcoDI | GTCTC | 1 cut(s) | 743 |
| BfaI | CTAG | 1 cut(s) | 572 |
| BfoI | RGCGCY | 2 cut(s) | 193, 272 |
| BfrI | CTTAAG | 1 cut(s) | 368 |
| BglII | AGATCT | 1 cut(s) | 106 |
| BisI | GCNGC | 1 cut(s) | 162 |
| BlsI | GCNGC | 1 cut(s) | 163 |
| Bme1390I | CCNGG | 1 cut(s) | 566 |
| BmgT120I | GGNCC | 1 cut(s) | 431 |
| BmiI | GGNNCC | 2 cut(s) | 96, 706 |
| BmrFI | CCNGG | 1 cut(s) | 566 |
| BmsI | GCATC | 4 cut(s) | 55, 91, 258, 409 |
| BpiI | GAAGAC | 1 cut(s) | 741 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 122, 154 |
| BpmI | CTGGAG | 1 cut(s) | 444 |
| Bpu10I | CCTNAGC | 1 cut(s) | 834 |
| BpuMI | CCSGG | 1 cut(s) | 566 |
| BsaBI | GATNNNNATC | 1 cut(s) | 105 |
| BsaHI | GRCGYC | 1 cut(s) | 752 |
| BsaJI | CCNNGG | 5 cut(s) | 90, 177, 411, 564, 589 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 442, 472 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 245 |
| Bse1I | ACTGG | 4 cut(s) | 165, 310, 316, 461 |
| Bse8I | GATNNNNATC | 1 cut(s) | 105 |
| BseDI | CCNNGG | 5 cut(s) | 90, 177, 411, 564, 589 |
| BseGI | GGATG | 2 cut(s) | 70, 642 |
| BseJI | GATNNNNATC | 1 cut(s) | 105 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 245 |
| BseMII | CTCAG | 2 cut(s) | 807, 825 |
| BseNI | ACTGG | 4 cut(s) | 165, 310, 316, 461 |
| BseRI | GAGGAG | 3 cut(s) | 79, 130, 761 |
| Bsh1236I | CGCG | 1 cut(s) | 307 |
| Bsh1285I | CGRYCG | 1 cut(s) | 528 |
| BshFI | GGCC | 2 cut(s) | 164, 432 |
| BshNI | GGYRCC | 1 cut(s) | 704 |
| BsiEI | CGRYCG | 1 cut(s) | 528 |
| BsiSI | CCGG | 1 cut(s) | 566 |
| BslFI | GGGAC | 2 cut(s) | 505, 547 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 245 |
| BsmAI | GTCTC | 1 cut(s) | 743 |
| BsmBI | CGTCTC | 1 cut(s) | 743 |
| BsmFI | GGGAC | 2 cut(s) | 505, 547 |
| BsnI | GGCC | 2 cut(s) | 164, 432 |
| Bsp1286I | GDGCHC | 1 cut(s) | 661 |
| Bsp143I | GATC | 4 cut(s) | 94, 106, 616, 796 |
| BspACI | CCGC | 2 cut(s) | 161, 654 |
| BspANI | GGCC | 2 cut(s) | 164, 432 |
| BspCNI | CTCAG | 2 cut(s) | 806, 826 |
| BspFNI | CGCG | 1 cut(s) | 307 |
| BspHI | TCATGA | 1 cut(s) | 619 |
| BspLI | GGNNCC | 2 cut(s) | 96, 706 |
| BspPI | GGATC | 3 cut(s) | 89, 102, 624 |
| BspT107I | GGYRCC | 1 cut(s) | 704 |
| BspTI | CTTAAG | 1 cut(s) | 368 |
| BsrI | ACTGG | 4 cut(s) | 165, 310, 316, 461 |
| BssECI | CCNNGG | 5 cut(s) | 90, 177, 411, 564, 589 |
| BssMI | GATC | 4 cut(s) | 94, 106, 616, 796 |
| BssNI | GRCGYC | 1 cut(s) | 752 |
| BssSI | CACGAG | 1 cut(s) | 207 |
| BssT1I | CCWWGG | 3 cut(s) | 177, 411, 589 |
| Bst2BI | CACGAG | 1 cut(s) | 207 |
| Bst4CI | ACNGT | 5 cut(s) | 364, 529, 809, 826, 856 |
| BstACI | GRCGYC | 1 cut(s) | 752 |
| BstAFI | CTTAAG | 1 cut(s) | 368 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 110 |
| BstDEI | CTNAG | 3 cut(s) | 193, 793, 834 |
| BstF5I | GGATG | 2 cut(s) | 70, 642 |
| BstFNI | CGCG | 1 cut(s) | 307 |
| BstH2I | RGCGCY | 2 cut(s) | 193, 272 |
| BstHHI | GCGC | 3 cut(s) | 192, 271, 309 |
| BstKTI | GATC | 4 cut(s) | 97, 109, 619, 799 |
| BstMAI | GTCTC | 1 cut(s) | 743 |
| BstMBI | GATC | 4 cut(s) | 94, 106, 616, 796 |
| BstMCI | CGRYCG | 1 cut(s) | 528 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 110, 337, 575 |
| BstSCI | CCNGG | 1 cut(s) | 564 |
| BstUI | CGCG | 1 cut(s) | 307 |
| BstV2I | GAAGAC | 1 cut(s) | 741 |
| BstX2I | RGATCY | 2 cut(s) | 94, 106 |
| BstYI | RGATCY | 2 cut(s) | 94, 106 |
| BsuRI | GGCC | 2 cut(s) | 164, 432 |
| BtsCI | GGATG | 2 cut(s) | 70, 642 |
| BtsIMutI | CAGTG | 2 cut(s) | 323, 861 |
| CciI | TCATGA | 1 cut(s) | 619 |
| CfoI | GCGC | 3 cut(s) | 192, 271, 309 |
| Cfr13I | GGNCC | 1 cut(s) | 431 |
| CseI | GACGC | 1 cut(s) | 760 |
| CviAII | CATG | 2 cut(s) | 620, 830 |
| DdeI | CTNAG | 3 cut(s) | 193, 793, 834 |
| DpnI | GATC | 4 cut(s) | 96, 108, 618, 798 |
| DpnII | GATC | 4 cut(s) | 94, 106, 616, 796 |
| EaeI | YGGCCR | 1 cut(s) | 162 |
| Eco130I | CCWWGG | 3 cut(s) | 177, 411, 589 |
| Eco24I | GRGCYC | 1 cut(s) | 661 |
| Eco47III | AGCGCT | 1 cut(s) | 191 |
| Eco57I | CTGAAG | 4 cut(s) | 54, 564, 753, 861 |
| EcoO109I | RGGNCCY | 1 cut(s) | 431 |
| EcoT14I | CCWWGG | 3 cut(s) | 177, 411, 589 |
| EcoT38I | GRGCYC | 1 cut(s) | 661 |
| ErhI | CCWWGG | 3 cut(s) | 177, 411, 589 |
| Esp3I | CGTCTC | 1 cut(s) | 743 |
| FaeI | CATG | 2 cut(s) | 623, 833 |
| FaiI | YATR | 6 cut(s) | 186, 236, 334, 621, 816, 831 |
| FaqI | GGGAC | 2 cut(s) | 505, 547 |
| FatI | CATG | 2 cut(s) | 619, 829 |
| FauI | CCCGC | 1 cut(s) | 647 |
| Fnu4HI | GCNGC | 1 cut(s) | 162 |
| FokI | GGATG | 2 cut(s) | 77, 629 |
| FriOI | GRGCYC | 1 cut(s) | 661 |
| Fsp4HI | GCNGC | 1 cut(s) | 162 |
| FspBI | CTAG | 1 cut(s) | 572 |
| GlaI | GCGC | 3 cut(s) | 191, 270, 308 |
| GluI | GCNGC | 1 cut(s) | 162 |
| GsuI | CTGGAG | 1 cut(s) | 444 |
| HaeII | RGCGCY | 2 cut(s) | 193, 272 |
| HaeIII | GGCC | 2 cut(s) | 164, 432 |
| HapII | CCGG | 1 cut(s) | 566 |
| HgaI | GACGC | 1 cut(s) | 760 |
| HhaI | GCGC | 3 cut(s) | 192, 271, 309 |
| Hin1I | GRCGYC | 1 cut(s) | 752 |
| Hin1II | CATG | 2 cut(s) | 623, 833 |
| Hin6I | GCGC | 3 cut(s) | 190, 269, 307 |
| HinP1I | GCGC | 3 cut(s) | 190, 269, 307 |
| HincII | GTYRAC | 1 cut(s) | 394 |
| HindII | GTYRAC | 1 cut(s) | 394 |
| HindIII | AAGCTT | 1 cut(s) | 576 |
| HinfI | GANTC | 7 cut(s) | 23, 86, 203, 451, 475, 518, 560 |
| HpaII | CCGG | 1 cut(s) | 566 |
| HphI | GGTGA | 1 cut(s) | 370 |
| Hpy166II | GTNNAC | 2 cut(s) | 394, 852 |
| Hpy188I | TCNGA | 8 cut(s) | 13, 94, 151, 467, 583, 694, 727, 796 |
| Hpy188III | TCNNGA | 4 cut(s) | 98, 207, 572, 620 |
| Hpy8I | GTNNAC | 2 cut(s) | 394, 852 |
| Hpy99I | CGWCG | 1 cut(s) | 785 |
| HpyAV | CCTTC | 4 cut(s) | 373, 422, 444, 836 |
| HpyCH4III | ACNGT | 5 cut(s) | 364, 529, 809, 826, 856 |
| HpyCH4V | TGCA | 3 cut(s) | 104, 422, 447 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 110, 337, 575 |
| HpyF3I | CTNAG | 3 cut(s) | 193, 793, 834 |
| Hsp92I | GRCGYC | 1 cut(s) | 752 |
| Hsp92II | CATG | 2 cut(s) | 623, 833 |
| HspAI | GCGC | 3 cut(s) | 190, 269, 307 |
| Kzo9I | GATC | 4 cut(s) | 94, 106, 616, 796 |
| LweI | GCATC | 4 cut(s) | 55, 91, 258, 409 |
| MaeI | CTAG | 1 cut(s) | 572 |
| MaeIII | GTNAC | 2 cut(s) | 358, 472 |
| MalI | GATC | 4 cut(s) | 96, 108, 618, 798 |
| MboI | GATC | 4 cut(s) | 94, 106, 616, 796 |
| MboII | GAAGA | 7 cut(s) | 108, 111, 114, 167, 428, 520, 746 |
| MflI | RGATCY | 2 cut(s) | 94, 106 |
| MhlI | GDGCHC | 1 cut(s) | 661 |
| MluCI | AATT | 3 cut(s) | 741, 771, 787 |
| MlyI | GAGTC | 5 cut(s) | 80, 445, 469, 527, 569 |
| MroXI | GAANNNNTTC | 1 cut(s) | 825 |
| MseI | TTAA | 2 cut(s) | 369, 774 |
| MslI | CAYNNNNRTG | 2 cut(s) | 254, 624 |
| MspCI | CTTAAG | 1 cut(s) | 368 |
| MspI | CCGG | 1 cut(s) | 566 |
| MspR9I | CCNGG | 1 cut(s) | 566 |
| MvnI | CGCG | 1 cut(s) | 307 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 110, 337, 575 |
| NciI | CCSGG | 1 cut(s) | 566 |
| NdeII | GATC | 4 cut(s) | 94, 106, 616, 796 |
| NlaIII | CATG | 2 cut(s) | 623, 833 |
| NlaIV | GGNNCC | 2 cut(s) | 96, 706 |
| NmeAIII | GCCGAG | 1 cut(s) | 264 |
| NmuCI | GTSAC | 2 cut(s) | 358, 472 |
| PagI | TCATGA | 1 cut(s) | 619 |
| PdmI | GAANNNNTTC | 1 cut(s) | 825 |
| PfeI | GAWTC | 2 cut(s) | 23, 203 |
| PkrI | GCNGC | 1 cut(s) | 163 |
| PleI | GAGTC | 5 cut(s) | 80, 445, 469, 526, 568 |
| PpsI | GAGTC | 5 cut(s) | 80, 445, 469, 526, 568 |
| PspN4I | GGNNCC | 2 cut(s) | 96, 706 |
| PspPI | GGNCC | 1 cut(s) | 431 |
| PsuI | RGATCY | 2 cut(s) | 94, 106 |
| RseI | CAYNNNNRTG | 2 cut(s) | 254, 624 |
| SaqAI | TTAA | 2 cut(s) | 369, 774 |
| SatI | GCNGC | 1 cut(s) | 162 |
| Sau3AI | GATC | 4 cut(s) | 94, 106, 616, 796 |
| Sau96I | GGNCC | 1 cut(s) | 431 |
| SchI | GAGTC | 5 cut(s) | 80, 445, 469, 527, 569 |
| ScrFI | CCNGG | 1 cut(s) | 566 |
| SduI | GDGCHC | 1 cut(s) | 661 |
| SetI | ASST | 8 cut(s) | 48, 76, 216, 224, 258, 497, 580, 595 |
| SfaNI | GCATC | 4 cut(s) | 55, 91, 258, 409 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 254, 624 |
| SmlI | CTYRAG | 1 cut(s) | 368 |
| SmoI | CTYRAG | 1 cut(s) | 368 |
| Sse9I | AATT | 3 cut(s) | 741, 771, 787 |
| SsiI | CCGC | 2 cut(s) | 161, 654 |
| SspMI | CTAG | 1 cut(s) | 572 |
| StyD4I | CCNGG | 1 cut(s) | 564 |
| StyI | CCWWGG | 3 cut(s) | 177, 411, 589 |
| TaaI | ACNGT | 5 cut(s) | 364, 529, 809, 826, 856 |
| TaqI | TCGA | 2 cut(s) | 252, 608 |
| TasI | AATT | 3 cut(s) | 741, 771, 787 |
| TauI | GCSGC | 1 cut(s) | 164 |
| TfiI | GAWTC | 2 cut(s) | 23, 203 |
| Tru1I | TTAA | 2 cut(s) | 369, 774 |
| Tru9I | TTAA | 2 cut(s) | 369, 774 |
| TscAI | CASTG | 2 cut(s) | 323, 861 |
| TseFI | GTSAC | 2 cut(s) | 358, 472 |
| Tsp45I | GTSAC | 2 cut(s) | 358, 472 |
| TspDTI | ATGAA | 2 cut(s) | 168, 818 |
| TspGWI | ACGGA | 1 cut(s) | 769 |
| TspRI | CASTG | 2 cut(s) | 323, 861 |
| Vha464I | CTTAAG | 1 cut(s) | 368 |
| XbaI | TCTAGA | 1 cut(s) | 571 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 323 |
| XmnI | GAANNNNTTC | 1 cut(s) | 825 |
| XspI | CTAG | 1 cut(s) | 572 |