Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Linker_histone | PF00538 | 69 - 129 | 1.2e-09 | linker histone H1 and H5 family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 734 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1183 |
| Acc65I | GGTACC | 2 cut(s) | 892, 965 |
| AccB1I | GGYRCC | 2 cut(s) | 892, 965 |
| AccBSI | CCGCTC | 1 cut(s) | 532 |
| AccI | GTMKAC | 1 cut(s) | 192 |
| AcoI | YGGCCR | 1 cut(s) | 476 |
| AcvI | CACGTG | 1 cut(s) | 92 |
| AcyI | GRCGYC | 4 cut(s) | 78, 838, 925, 1024 |
| AfaI | GTAC | 6 cut(s) | 880, 894, 967, 981, 1066, 1080 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 34, 485, 586, 1268 |
| AflIII | ACRYGT | 1 cut(s) | 91 |
| AgsI | TTSAA | 6 cut(s) | 250, 355, 551, 566, 995, 1094 |
| AhlI | ACTAGT | 1 cut(s) | 1067 |
| AjnI | CCWGG | 2 cut(s) | 841, 1132 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1144, 1176 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 153, 185 |
| AluBI | AGCT | 6 cut(s) | 178, 857, 944, 1043, 1169, 1191 |
| AluI | AGCT | 6 cut(s) | 178, 857, 944, 1043, 1169, 1191 |
| Alw21I | GWGCWC | 2 cut(s) | 904, 1090 |
| Alw26I | GTCTC | 4 cut(s) | 69, 446, 841, 1132 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1228, 1299 |
| AoxI | GGCC | 7 cut(s) | 476, 496, 577, 608, 823, 1129, 1280 |
| ApeKI | GCWGC | 3 cut(s) | 913, 1012, 1111 |
| AseI | ATTAAT | 1 cut(s) | 537 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 702 |
| Asp718I | GGTACC | 2 cut(s) | 892, 965 |
| AspLEI | GCGC | 1 cut(s) | 328 |
| AspS9I | GGNCC | 1 cut(s) | 1130 |
| AsuC2I | CCSGG | 3 cut(s) | 480, 500, 665 |
| AsuHPI | GGTGA | 3 cut(s) | 437, 601, 731 |
| AxyI | CCTNAGG | 1 cut(s) | 906 |
| BanI | GGYRCC | 2 cut(s) | 892, 965 |
| BbrPI | CACGTG | 1 cut(s) | 92 |
| Bbv12I | GWGCWC | 2 cut(s) | 904, 1090 |
| BbvCI | CCTCAGC | 1 cut(s) | 18 |
| BbvI | GCAGC | 3 cut(s) | 925, 1024, 1123 |
| BccI | CCATC | 5 cut(s) | 383, 416, 422, 501, 586 |
| BceAI | ACGGC | 2 cut(s) | 65, 304 |
| BciT130I | CCWGG | 2 cut(s) | 843, 1134 |
| BclI | TGATCA | 1 cut(s) | 793 |
| BcnI | CCSGG | 3 cut(s) | 480, 500, 665 |
| BcoDI | GTCTC | 4 cut(s) | 69, 446, 841, 1132 |
| BcuI | ACTAGT | 1 cut(s) | 1067 |
| BfaI | CTAG | 3 cut(s) | 186, 1068, 1076 |
| BglI | GCCNNNNNGGC | 3 cut(s) | 86, 922, 1021 |
| BisI | GCNGC | 8 cut(s) | 99, 102, 166, 476, 836, 914, 1013, 1112 |
| BlsI | GCNGC | 8 cut(s) | 100, 103, 167, 477, 837, 915, 1014, 1113 |
| BmcAI | AGTACT | 1 cut(s) | 1066 |
| Bme1390I | CCNGG | 5 cut(s) | 480, 500, 665, 843, 1134 |
| BmgT120I | GGNCC | 1 cut(s) | 1130 |
| BmiI | GGNNCC | 4 cut(s) | 115, 777, 894, 967 |
| BmrFI | CCNGG | 5 cut(s) | 480, 500, 665, 843, 1134 |
| BmsI | GCATC | 2 cut(s) | 31, 1213 |
| Bpu10I | CCTNAGC | 2 cut(s) | 18, 1229 |
| BpuMI | CCSGG | 3 cut(s) | 480, 500, 665 |
| BsaAI | YACGTR | 1 cut(s) | 92 |
| BsaHI | GRCGYC | 4 cut(s) | 78, 838, 925, 1024 |
| BsaI | GGTCTC | 2 cut(s) | 841, 1132 |
| BsaJI | CCNNGG | 7 cut(s) | 320, 479, 499, 664, 842, 1132, 1133 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 134, 153, 164, 183, 252, 282 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 34, 485, 586, 1268 |
| Bse1I | ACTGG | 1 cut(s) | 645 |
| Bse21I | CCTNAGG | 1 cut(s) | 906 |
| Bse3DI | GCAATG | 1 cut(s) | 368 |
| BseBI | CCWGG | 2 cut(s) | 843, 1134 |
| BseDI | CCNNGG | 7 cut(s) | 320, 479, 499, 664, 842, 1132, 1133 |
| BseGI | GGATG | 6 cut(s) | 22, 180, 205, 427, 625, 877 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 34, 485, 586, 1268 |
| BseMI | GCAATG | 1 cut(s) | 368 |
| BseMII | CTCAG | 6 cut(s) | 32, 594, 800, 897, 1206, 1220 |
| BseNI | ACTGG | 1 cut(s) | 645 |
| BseRI | GAGGAG | 8 cut(s) | 257, 276, 478, 481, 585, 788, 923, 1022 |
| BseX3I | CGGCCG | 1 cut(s) | 476 |
| BseXI | GCAGC | 3 cut(s) | 925, 1024, 1123 |
| Bsh1285I | CGRYCG | 1 cut(s) | 479 |
| BshFI | GGCC | 7 cut(s) | 478, 498, 579, 610, 825, 1131, 1282 |
| BshNI | GGYRCC | 2 cut(s) | 892, 965 |
| BsiEI | CGRYCG | 1 cut(s) | 479 |
| BsiHKAI | GWGCWC | 2 cut(s) | 904, 1090 |
| BsiSI | CCGG | 3 cut(s) | 479, 499, 664 |
| BslFI | GGGAC | 1 cut(s) | 609 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 34, 485, 586, 1268 |
| BsmAI | GTCTC | 4 cut(s) | 69, 446, 841, 1132 |
| BsmBI | CGTCTC | 1 cut(s) | 69 |
| BsmFI | GGGAC | 1 cut(s) | 609 |
| BsnI | GGCC | 7 cut(s) | 478, 498, 579, 610, 825, 1131, 1282 |
| Bso31I | GGTCTC | 2 cut(s) | 841, 1132 |
| Bsp1286I | GDGCHC | 2 cut(s) | 904, 1090 |
| Bsp143I | GATC | 2 cut(s) | 793, 935 |
| BspANI | GGCC | 7 cut(s) | 478, 498, 579, 610, 825, 1131, 1282 |
| BspCNI | CTCAG | 6 cut(s) | 31, 595, 799, 898, 1205, 1221 |
| BspLI | GGNNCC | 4 cut(s) | 115, 777, 894, 967 |
| BspQI | GCTCTTC | 1 cut(s) | 1101 |
| BspT107I | GGYRCC | 2 cut(s) | 892, 965 |
| BspTNI | GGTCTC | 2 cut(s) | 841, 1132 |
| BsrBI | CCGCTC | 1 cut(s) | 532 |
| BsrDI | GCAATG | 1 cut(s) | 368 |
| BsrI | ACTGG | 1 cut(s) | 645 |
| BssECI | CCNNGG | 7 cut(s) | 320, 479, 499, 664, 842, 1132, 1133 |
| BssMI | GATC | 2 cut(s) | 793, 935 |
| BssNI | GRCGYC | 4 cut(s) | 78, 838, 925, 1024 |
| Bst2UI | CCWGG | 2 cut(s) | 843, 1134 |
| Bst4CI | ACNGT | 1 cut(s) | 1180 |
| Bst6I | CTCTTC | 3 cut(s) | 487, 549, 1101 |
| BstACI | GRCGYC | 4 cut(s) | 78, 838, 925, 1024 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 63 |
| BstBAI | YACGTR | 1 cut(s) | 92 |
| BstDEI | CTNAG | 9 cut(s) | 18, 603, 786, 906, 1192, 1212, 1229, 1242, 1292 |
| BstDSI | CCRYGG | 1 cut(s) | 320 |
| BstF5I | GGATG | 6 cut(s) | 22, 180, 205, 427, 625, 877 |
| BstHHI | GCGC | 1 cut(s) | 328 |
| BstKTI | GATC | 2 cut(s) | 796, 938 |
| BstMAI | GTCTC | 4 cut(s) | 69, 446, 841, 1132 |
| BstMBI | GATC | 2 cut(s) | 793, 935 |
| BstMCI | CGRYCG | 1 cut(s) | 479 |
| BstNI | CCWGG | 2 cut(s) | 843, 1134 |
| BstSCI | CCNGG | 5 cut(s) | 478, 498, 663, 841, 1132 |
| BstV1I | GCAGC | 3 cut(s) | 925, 1024, 1123 |
| BstZI | CGGCCG | 1 cut(s) | 476 |
| Bsu36I | CCTNAGG | 1 cut(s) | 906 |
| BsuRI | GGCC | 7 cut(s) | 478, 498, 579, 610, 825, 1131, 1282 |
| BtgI | CCRYGG | 1 cut(s) | 320 |
| BtsCI | GGATG | 6 cut(s) | 22, 180, 205, 427, 625, 877 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1228, 1299 |
| CfoI | GCGC | 1 cut(s) | 328 |
| Cfr13I | GGNCC | 1 cut(s) | 1130 |
| CseI | GACGC | 4 cut(s) | 86, 827, 914, 1013 |
| Csp6I | GTAC | 6 cut(s) | 879, 893, 966, 980, 1065, 1079 |
| CviAII | CATG | 5 cut(s) | 127, 329, 616, 791, 1049 |
| CviQI | GTAC | 6 cut(s) | 879, 893, 966, 980, 1065, 1079 |
| DdeI | CTNAG | 9 cut(s) | 18, 603, 786, 906, 1192, 1212, 1229, 1242, 1292 |
| DpnI | GATC | 2 cut(s) | 795, 937 |
| DpnII | GATC | 2 cut(s) | 793, 935 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1183 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1183 |
| EaeI | YGGCCR | 1 cut(s) | 476 |
| EagI | CGGCCG | 1 cut(s) | 476 |
| Eam1104I | CTCTTC | 3 cut(s) | 487, 549, 1101 |
| EarI | CTCTTC | 3 cut(s) | 487, 549, 1101 |
| EciI | GGCGGA | 2 cut(s) | 119, 198 |
| EclXI | CGGCCG | 1 cut(s) | 476 |
| Eco147I | AGGCCT | 1 cut(s) | 1282 |
| Eco31I | GGTCTC | 2 cut(s) | 841, 1132 |
| Eco52I | CGGCCG | 1 cut(s) | 476 |
| Eco72I | CACGTG | 1 cut(s) | 92 |
| Eco81I | CCTNAGG | 1 cut(s) | 906 |
| EcoRII | CCWGG | 2 cut(s) | 841, 1132 |
| Esp3I | CGTCTC | 1 cut(s) | 69 |
| FaeI | CATG | 5 cut(s) | 130, 332, 619, 794, 1052 |
| FaqI | GGGAC | 1 cut(s) | 609 |
| FatI | CATG | 5 cut(s) | 126, 328, 615, 790, 1048 |
| FauI | CCCGC | 1 cut(s) | 477 |
| FbaI | TGATCA | 1 cut(s) | 793 |
| FblI | GTMKAC | 1 cut(s) | 192 |
| Fnu4HI | GCNGC | 8 cut(s) | 99, 102, 166, 476, 836, 914, 1013, 1112 |
| FokI | GGATG | 6 cut(s) | 9, 167, 192, 434, 632, 884 |
| Fsp4HI | GCNGC | 8 cut(s) | 99, 102, 166, 476, 836, 914, 1013, 1112 |
| FspBI | CTAG | 3 cut(s) | 186, 1068, 1076 |
| GlaI | GCGC | 1 cut(s) | 327 |
| GluI | GCNGC | 8 cut(s) | 99, 102, 166, 476, 836, 914, 1013, 1112 |
| HaeIII | GGCC | 7 cut(s) | 478, 498, 579, 610, 825, 1131, 1282 |
| HapII | CCGG | 3 cut(s) | 479, 499, 664 |
| HgaI | GACGC | 4 cut(s) | 86, 827, 914, 1013 |
| HhaI | GCGC | 1 cut(s) | 328 |
| Hin1I | GRCGYC | 4 cut(s) | 78, 838, 925, 1024 |
| Hin1II | CATG | 5 cut(s) | 130, 332, 619, 794, 1052 |
| Hin6I | GCGC | 1 cut(s) | 326 |
| HinP1I | GCGC | 1 cut(s) | 326 |
| HinfI | GANTC | 3 cut(s) | 458, 703, 1160 |
| HpaII | CCGG | 3 cut(s) | 479, 499, 664 |
| HphI | GGTGA | 3 cut(s) | 437, 601, 731 |
| Hpy166II | GTNNAC | 1 cut(s) | 193 |
| Hpy188I | TCNGA | 5 cut(s) | 74, 604, 1165, 1195, 1295 |
| Hpy188III | TCNNGA | 3 cut(s) | 884, 905, 1091 |
| Hpy8I | GTNNAC | 1 cut(s) | 193 |
| Hpy99I | CGWCG | 5 cut(s) | 158, 161, 930, 1029, 1128 |
| HpyAV | CCTTC | 5 cut(s) | 38, 251, 465, 560, 569 |
| HpyCH4III | ACNGT | 1 cut(s) | 1180 |
| HpyCH4IV | ACGT | 1 cut(s) | 91 |
| HpyCH4V | TGCA | 2 cut(s) | 66, 281 |
| HpyF3I | CTNAG | 9 cut(s) | 18, 603, 786, 906, 1192, 1212, 1229, 1242, 1292 |
| HpySE526I | ACGT | 1 cut(s) | 91 |
| Hsp92I | GRCGYC | 4 cut(s) | 78, 838, 925, 1024 |
| Hsp92II | CATG | 5 cut(s) | 130, 332, 619, 794, 1052 |
| HspAI | GCGC | 1 cut(s) | 326 |
| KpnI | GGTACC | 2 cut(s) | 896, 969 |
| Ksp22I | TGATCA | 1 cut(s) | 793 |
| Kzo9I | GATC | 2 cut(s) | 793, 935 |
| LguI | GCTCTTC | 1 cut(s) | 1101 |
| LmnI | GCTCC | 6 cut(s) | 113, 529, 775, 907, 910, 1009 |
| Lsp1109I | GCAGC | 3 cut(s) | 925, 1024, 1123 |
| LweI | GCATC | 2 cut(s) | 31, 1213 |
| MaeI | CTAG | 3 cut(s) | 186, 1068, 1076 |
| MaeII | ACGT | 1 cut(s) | 91 |
| MalI | GATC | 2 cut(s) | 795, 937 |
| MbiI | CCGCTC | 1 cut(s) | 532 |
| MboI | GATC | 2 cut(s) | 793, 935 |
| MboII | GAAGA | 9 cut(s) | 367, 504, 533, 563, 566, 692, 734, 767, 1118 |
| MhlI | GDGCHC | 2 cut(s) | 904, 1090 |
| MluCI | AATT | 2 cut(s) | 403, 409 |
| MlyI | GAGTC | 1 cut(s) | 467 |
| MmeI | TCCRAC | 1 cut(s) | 196 |
| MroXI | GAANNNNTTC | 1 cut(s) | 702 |
| MseI | TTAA | 4 cut(s) | 147, 408, 417, 537 |
| MspI | CCGG | 3 cut(s) | 479, 499, 664 |
| MspR9I | CCNGG | 5 cut(s) | 480, 500, 665, 843, 1134 |
| MvaI | CCWGG | 2 cut(s) | 843, 1134 |
| NciI | CCSGG | 3 cut(s) | 480, 500, 665 |
| NdeII | GATC | 2 cut(s) | 793, 935 |
| NlaIII | CATG | 5 cut(s) | 130, 332, 619, 794, 1052 |
| NlaIV | GGNNCC | 4 cut(s) | 115, 777, 894, 967 |
| PasI | CCCWGGG | 1 cut(s) | 1133 |
| PceI | AGGCCT | 1 cut(s) | 1282 |
| PciSI | GCTCTTC | 1 cut(s) | 1101 |
| PdmI | GAANNNNTTC | 1 cut(s) | 702 |
| PfeI | GAWTC | 2 cut(s) | 703, 1160 |
| PflFI | GACNNNGTC | 1 cut(s) | 457 |
| PkrI | GCNGC | 8 cut(s) | 100, 103, 167, 477, 837, 915, 1014, 1113 |
| PleI | GAGTC | 1 cut(s) | 466 |
| PmaCI | CACGTG | 1 cut(s) | 92 |
| PmlI | CACGTG | 1 cut(s) | 92 |
| PpsI | GAGTC | 1 cut(s) | 466 |
| Ppu21I | YACGTR | 1 cut(s) | 92 |
| PshBI | ATTAAT | 1 cut(s) | 537 |
| PsiI | TTATAA | 1 cut(s) | 734 |
| Psp6I | CCWGG | 2 cut(s) | 841, 1132 |
| PspCI | CACGTG | 1 cut(s) | 92 |
| PspGI | CCWGG | 2 cut(s) | 841, 1132 |
| PspN4I | GGNNCC | 4 cut(s) | 115, 777, 894, 967 |
| PspPI | GGNCC | 1 cut(s) | 1130 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1228, 1299 |
| PsyI | GACNNNGTC | 1 cut(s) | 457 |
| RsaI | GTAC | 6 cut(s) | 880, 894, 967, 981, 1066, 1080 |
| RsaNI | GTAC | 6 cut(s) | 879, 893, 966, 980, 1065, 1079 |
| SapI | GCTCTTC | 1 cut(s) | 1101 |
| SaqAI | TTAA | 4 cut(s) | 147, 408, 417, 537 |
| SatI | GCNGC | 8 cut(s) | 99, 102, 166, 476, 836, 914, 1013, 1112 |
| Sau3AI | GATC | 2 cut(s) | 793, 935 |
| Sau96I | GGNCC | 1 cut(s) | 1130 |
| ScaI | AGTACT | 1 cut(s) | 1066 |
| SchI | GAGTC | 1 cut(s) | 467 |
| ScrFI | CCNGG | 5 cut(s) | 480, 500, 665, 843, 1134 |
| SduI | GDGCHC | 2 cut(s) | 904, 1090 |
| SfaNI | GCATC | 2 cut(s) | 31, 1213 |
| SpeI | ACTAGT | 1 cut(s) | 1067 |
| Sse9I | AATT | 2 cut(s) | 403, 409 |
| SseBI | AGGCCT | 1 cut(s) | 1282 |
| SspMI | CTAG | 3 cut(s) | 186, 1068, 1076 |
| StuI | AGGCCT | 1 cut(s) | 1282 |
| StyD4I | CCNGG | 5 cut(s) | 478, 498, 663, 841, 1132 |
| TaaI | ACNGT | 1 cut(s) | 1180 |
| TaiI | ACGT | 1 cut(s) | 94 |
| TaqI | TCGA | 9 cut(s) | 159, 221, 287, 461, 706, 928, 1027, 1099, 1285 |
| TasI | AATT | 2 cut(s) | 403, 409 |
| TatI | WGTACW | 1 cut(s) | 1064 |
| TauI | GCSGC | 5 cut(s) | 101, 104, 168, 478, 838 |
| TfiI | GAWTC | 2 cut(s) | 703, 1160 |
| Tru1I | TTAA | 4 cut(s) | 147, 408, 417, 537 |
| Tru9I | TTAA | 4 cut(s) | 147, 408, 417, 537 |
| TseI | GCWGC | 3 cut(s) | 913, 1012, 1111 |
| TspDTI | ATGAA | 4 cut(s) | 143, 338, 555, 741 |
| TspGWI | ACGGA | 1 cut(s) | 142 |
| Tth111I | GACNNNGTC | 1 cut(s) | 457 |
| VspI | ATTAAT | 1 cut(s) | 537 |
| XmiI | GTMKAC | 1 cut(s) | 192 |
| XmnI | GAANNNNTTC | 1 cut(s) | 702 |
| XspI | CTAG | 3 cut(s) | 186, 1068, 1076 |
| ZrmI | AGTACT | 1 cut(s) | 1066 |