Rorug01G0096500

Domain of unknown function (DUF4283)

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
15993136 .. 15996787
3652 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0096500.1

Sequence Viewer

Length: 1356 bp
ATGTCGGCATCGACTGTATCTATCACGGCGAACCCGACGACCCGGCGGCGACCCGTCGTGGCCGTCGAGAAGAGGTCCACCCACATCGAACTCGTCTCCGCCGAACCCCAATCGCAGAGGGCCGACGACGGCCCCCGACCCGAAACCGCCAGAGATCTGAGTCACCAGTCCATCAGAAGCGAAACCGCCGTCGACCGCTCCGCTCAGACCCGAAGAACCGGAGCCACTTCCACCGTCTCACCCCCCTCCGCTCACCGCCGCTCCCGCAAAGCCCTACCCGGAACCAAGCGACCTCGCTGGCTCAGGTTCCTTCGTATTTTCGGCAAGTGGTTCGGTCTTCTTGTTTTCGTCGGCGGTTTGGCCCAGATACTCATGCGCCTCGCTTACGGCTCCACCGCCGCCGCGCCCATGGCGTTTACCGACTTGGAGGGTCGGATTGCGGAGGTCGAAGCGTCGATGAAGGAGACCTCCAGGATGCTTCAGGTTGGGGTGGACGTGGCGAGCCGGAAGATCGATAAGGAGGTCGGAGAGTTGAGGAAGGAGGTGGAGGACAGAGGGGTGGCTTTGGCCGGTGAATTGAGGAAATTGGAGGCGAAAAGCGAAGGGCTGGAGAGGTCTGTGGAGGAATTGAAGAGCGTGGAGTGGCTGTCCAAGCAAGAGTTTGAGGGGATTTACCAGGAGTTGAAGAAGGAAGGGAAGAGTGGTGAGTTGGGTGCGAGTTTTGATGATATAATGGCGTATGCCAGGAATGTGGTGGAGAAGGAGATAGAGAAGCATGCTGCGGATGGGCTTGCGAGGGTGGATTATGCATTGGGGAGTGGAGGTGCTGCGGTTGTGAAGCATTCGGAGCCGTATGTGGTGGGGAAAGGGAATTGGTGGACGAGTATGAGGAATGGGGTTCATAGTGATGCTGATAAGATGTTGAGACCGAGTTTTGGAGAGCCCGGGCAGTGTTTTCCATTGAAAGGGAGTAGTGGGTTTGTTCAGATTAAGCTCAGGACAGCAATTATTCCCGAGGCTATCACTCTGGAGCATGTTTCAAAGAGTGTTGCTTTCGACAGAACGAGTGCTCCCAAGGACTGTCGTATATCTGCATGGCTGCGAGGAGTGCATGATCAGGATTTAGAAGTCCATACAGAGAAGAGGTTTCTTTTGGCTGAGTTCACATATGACCTCGAGAAGAGCAATGCCCAGACAGTCACTGTGTTGGACTCAGCTGTGTCTAACATTGTTGACACAGTGAGGTTGGACTTCACATCCAATCATGGTAGCCCTTCACATACTTGCATATATCGTCTGCGAGTTCATGGACATGAACCCGAAGCTGTTTCTGTAATGGCCATGCACGAGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

451

Amino Acids

49.8

Weight (kDa)

8.58

Isoelectric Point (pI)

47.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sad1_UNC PF07738 303 - 438 4e-35 Sad1 / UNC-like C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000044)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07760 AT5G28823
fragaria_vesca FvH4_1g13572 FvH4_2g03281 FvH4_2g04691 FvH4_2g08332 FvH4_2g08333 FvH4_2g15313 FvH4_2g26101 FvH4_2g29541 FvH4_3g06911 FvH4_3g34351 FvH4_3g43733 FvH4_4g02432 FvH4_4g05601 FvH4_4g08213 FvH4_4g09961 FvH4_4g10131 FvH4_4g20001 FvH4_4g20002 FvH4_5g01051 FvH4_5g01401 FvH4_5g27943 FvH4_6g09220 FvH4_6g17383 FvH4_6g35491 FvH4_6g46421 FvH4_7g04151 FvH4_7g13962 FvH4_7g18611 FvH4_7g19491 FvH4_7g19511 FvH4_7g26562
malus_domestica MD06G1221600.v1.1
pyrus_communis pycom10g21150
rosa_chinensis RchiOBHm_Chr1g0337571 RchiOBHm_Chr2g0168771 RchiOBHm_Chr3g0453631 RchiOBHm_Chr6g0278581
rosa_laevigata RLG00000001899 RLG00000001925 RLG00000002026 RLG00000003410 RLG00000003767 RLG00000004304 RLG00000004473 RLG00000004677 RLG00000006856 RLG00000007994 RLG00000009888 RLG00000011627 RLG00000012174 RLG00000012217 RLG00000013118 RLG00000013736 RLG00000014194 RLG00000014251 RLG00000015011 RLG00000015057 RLG00000015235 RLG00000017416 RLG00000018052 RLG00000018537 RLG00000019968 RLG00000020096 RLG00000020263 RLG00000022606 RLG00000023119 RLG00000028111 RLG00000029686 RLG00000030126 RLG00000031124 RLG00000031236 RLG00000032766 RLG00000033171 RLG00000033548 RLG00000033987 RLG00000034062 RLG00000035115 RLG00000035863
rosa_multiflora Rmu_co8036712.1_g000001 Rmu_co8080248.1_g000001 Rmu_co8208334.1_g000001 Rmu_co8253451.1_g000001 Rmu_co8393241.1_g000001 Rmu_co8522225.1_g000005 Rmu_sc0000060.1_g000030 Rmu_sc0000060.1_g000031 Rmu_sc0000060.1_g000032 Rmu_sc0000090.1_g000008 Rmu_sc0000149.1_g000051 Rmu_sc0000149.1_g000058 Rmu_sc0000309.1_g000050 Rmu_sc0000370.1_g000022 Rmu_sc0000370.1_g000023 Rmu_sc0000370.1_g000024 Rmu_sc0000418.1_g000018 Rmu_sc0000427.1_g000014 Rmu_sc0000427.1_g000015 Rmu_sc0000434.1_g000008 Rmu_sc0000487.1_g000038 Rmu_sc0000487.1_g000039 Rmu_sc0000569.1_g000029 Rmu_sc0000580.1_g000097 Rmu_sc0000595.1_g000068 Rmu_sc0000607.1_g000027 Rmu_sc0000738.1_g000004 Rmu_sc0000758.1_g000001 Rmu_sc0000758.1_g000002 Rmu_sc0000870.1_g000019 Rmu_sc0000924.1_g000040 Rmu_sc0000924.1_g000041 Rmu_sc0000999.1_g000037 Rmu_sc0001001.1_g000001 Rmu_sc0001010.1_g000080 Rmu_sc0001075.1_g000041 Rmu_sc0001097.1_g000016 Rmu_sc0001173.1_g000020 Rmu_sc0001258.1_g000010 Rmu_sc0001425.1_g000031 Rmu_sc0001493.1_g000020 Rmu_sc0001493.1_g000021 Rmu_sc0001644.1_g000024 Rmu_sc0001648.1_g000039 Rmu_sc0001662.1_g000002 Rmu_sc0001849.1_g000046 Rmu_sc0001851.1_g000038 Rmu_sc0001861.1_g000006 Rmu_sc0001899.1_g000008 Rmu_sc0002231.1_g000023 Rmu_sc0002393.1_g000012 Rmu_sc0002515.1_g000010 Rmu_sc0002551.1_g000013 Rmu_sc0002680.1_g000029 Rmu_sc0002700.1_g000030 Rmu_sc0002700.1_g000031 Rmu_sc0002709.1_g000035 Rmu_sc0002779.1_g000017 Rmu_sc0003267.1_g000040 Rmu_sc0003306.1_g000009 Rmu_sc0003338.1_g000014 Rmu_sc0003522.1_g000038 Rmu_sc0003522.1_g000039 Rmu_sc0003653.1_g000031 Rmu_sc0003901.1_g000003 Rmu_sc0003920.1_g000009 Rmu_sc0004014.1_g000009 Rmu_sc0004016.1_g000013 Rmu_sc0004031.1_g000002 Rmu_sc0004106.1_g000001 Rmu_sc0004432.1_g000004 Rmu_sc0004481.1_g000020 Rmu_sc0004874.1_g000005 Rmu_sc0004928.1_g000005 Rmu_sc0005065.1_g000053 Rmu_sc0005091.1_g000005 Rmu_sc0005217.1_g000015 Rmu_sc0005242.1_g000002 Rmu_sc0005300.1_g000011 Rmu_sc0005400.1_g000004 Rmu_sc0005486.1_g000007 Rmu_sc0005527.1_g000015 Rmu_sc0006059.1_g000021 Rmu_sc0006087.1_g000004 Rmu_sc0006184.1_g000006 Rmu_sc0006184.1_g000007 Rmu_sc0006578.1_g000006 Rmu_sc0006730.1_g000010 Rmu_sc0006736.1_g000030 Rmu_sc0006736.1_g000033 Rmu_sc0007333.1_g000018 Rmu_sc0007856.1_g000010 Rmu_sc0008231.1_g000003 Rmu_sc0009862.1_g000012 Rmu_sc0010547.1_g000001 Rmu_sc0010547.1_g000003 Rmu_sc0010632.1_g000012 Rmu_sc0010747.1_g000008 Rmu_sc0011075.1_g000009 Rmu_sc0011565.1_g000004 Rmu_sc0011641.1_g000003 Rmu_sc0013102.1_g000013 Rmu_sc0013160.1_g000006 Rmu_sc0014846.1_g000004 Rmu_sc0017037.1_g000003 Rmu_sc0018203.1_g000001 Rmu_sc0018204.1_g000001 Rmu_sc0018348.1_g000001 Rmu_sc0019354.1_g000002 Rmu_sc0021630.1_g000002 Rmu_sc0022987.1_g000002 Rmu_sc0024469.1_g000005 Rmu_sc0033519.1_g000001 Rmu_sc0033519.1_g000002 Rmu_sc0033519.1_g000003 Rmu_sc0042775.1_g000001 Rmu_ssc0000110.1_g000003 Rmu_ssc0000110.1_g000004 Rmu_ssc0000126.1_g000068 Rmu_ssc0000200.1_g000007 Rmu_ssc0000295.1_g000003 Rmu_ssc0000295.1_g000004 Rmu_ssc0000299.1_g000010 Rmu_ssc0000308.1_g000024 Rmu_ssc0000339.1_g000006 Rmu_ssc0000385.1_g000012 Rmu_ssc0000409.1_g000004 Rmu_ssc0000421.1_g000004
rosa_roxburghii Rroxscaffold_156G00440360 Rroxscaffold_166G00440800 Rroxscaffold_1G00039040 Rroxscaffold_1G00039050 Rroxscaffold_1G00073950 Rroxscaffold_2G00091710 Rroxscaffold_2G00120050 Rroxscaffold_2G00122590 Rroxscaffold_3G00219700 Rroxscaffold_3G00264140 Rroxscaffold_4G00290600 Rroxscaffold_4G00323610 Rroxscaffold_4G00328460 Rroxscaffold_5G00343440 Rroxscaffold_5G00343570 Rroxscaffold_5G00378540 Rroxscaffold_5G00385090 Rroxscaffold_7G00169130 Rroxscaffold_7G00216420
rosa_rugosa Rorug01G0065800 Rorug01G0073500 Rorug01G0091700 Rorug01G0096500 Rorug01G0204700.1 Rorug01G0249100 Rorug01G0333800 Rorug01G0333900 Rorug01G0339500 Rorug01G0431300 Rorug02G0085400 Rorug02G0117500 Rorug02G0130900 Rorug02G0178800 Rorug02G0226700 Rorug02G0336300 Rorug02G0338700 Rorug02G0351400 Rorug02G0459900 Rorug03G0187000 Rorug03G0223700 Rorug03G0291300 Rorug03G0291300 Rorug03G0311100 Rorug03G0316900 Rorug03G0346000 Rorug04G0014500 Rorug04G0014600 Rorug04G0124100 Rorug04G0136500 Rorug04G0302000 Rorug04G0338100 Rorug04G0338200 Rorug04G0413100 Rorug05G0182200 Rorug05G0226500 Rorug05G0273300 Rorug05G0292200 Rorug05G0292200 Rorug05G0392500 Rorug05G0394500 Rorug05G0394600 Rorug05G0505600.1 Rorug06G0351400 Rorug06G0393400 Rorug06G0393600 Rorug06G0470000 Rorug07G0063100 Rorug07G0086800 Rorug07G0109200 Rorug07G0236100
rosa_samantha Rh1AG010800 Rh1AG011100 Rh1AG064900 Rh1AG088000 Rh1AG207100 Rh1AG262000 Rh1AG300800 Rh1BG043000 Rh1BG144600 Rh1BG180700 Rh1BG180800 Rh1BG328800 Rh1BG399400 Rh1CG041400 Rh1CG047300 Rh1CG379700 Rh1DG036500 Rh1DG083000 Rh1DG210700 Rh1DG210800 Rh1DG231100 Rh2AG007900 Rh2AG055500 Rh2AG339100 Rh2AG368100 Rh2BG243300 Rh2BG258900 Rh2BG292000 Rh2BG333500 Rh2BG387300 Rh2BG612800 Rh2BG619100 Rh2CG026500 Rh2CG163600 Rh2CG535700 Rh2DG186400 Rh2DG235000 Rh2DG314500 Rh2DG388500 Rh2DG391400 Rh2DG496900 Rh2DG526700 Rh2DG570700 Rh3AG330700 Rh3BG266900 Rh3CG236000 Rh3CG340400 Rh3DG090000 Rh3DG278400 Rh3DG297600 Rh3DG362600 Rh4AG001300 Rh4AG023300 Rh4AG097100 Rh4AG427000 Rh4BG029400 Rh4BG032400 Rh4BG086000 Rh4BG249200 Rh4CG001900 Rh4CG040600 Rh4CG093000 Rh4CG106300 Rh4CG113200 Rh4CG113900 Rh4DG002300 Rh4DG144400 Rh4DG234200 Rh5AG043700 Rh5AG084900 Rh5AG161500 Rh5AG409000 Rh5AG457200 Rh5AG457900 Rh5AG473700 Rh5AG520600 Rh5BG042100 Rh5BG124100 Rh5BG323500 Rh5BG417200 Rh5BG443700 Rh5BG451500 Rh5BG464900 Rh5BG470400 Rh5BG522500 Rh5CG068800 Rh5CG178300 Rh5CG231000 Rh5CG258600 Rh5CG394500 Rh5CG473700 Rh5DG164700 Rh5DG235400 Rh5DG261300 Rh5DG304900 Rh5DG334500 Rh5DG424300 Rh5DG458400 Rh5DG478600 Rh5DG552300 Rh5DG552700 Rh6AG037000 Rh6AG042100 Rh6AG255500 Rh6AG283400 Rh6AG291800 Rh6BG049600 Rh6BG080700 Rh6BG114600 Rh6BG128900 Rh6BG352500 Rh6CG052400 Rh6CG112900 Rh6CG113000 Rh6CG131300 Rh6CG157700 Rh6CG243200 Rh6CG254100 Rh6CG275700 Rh6CG299700 Rh6CG309100 Rh6CG317600 Rh6CG342600 Rh6CG471900 Rh6DG038200 Rh6DG102300 Rh6DG114400 Rh6DG225900 Rh6DG292900 Rh6DG320700 Rh6DG512800 Rh7AG217700 Rh7AG313900 Rh7AG446000 Rh7AG472600 Rh7BG223100 Rh7BG349900 Rh7BG352000 Rh7CG160200 Rh7CG233900 Rh7CG242700 Rh7CG273900 Rh7CG306400 Rh7CG322200 Rh7DG053800 Rh7DG077800 Rh7DG227700 Rh7DG404800
rosa_wichuraiana Rw0G003990 Rw2G022110 Rw2G024890 Rw6G005700 Rw7G008770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 4 cut(s) 198, 203, 251, 261
AccI GTMKAC 1 cut(s) 192
AccII CGCG 1 cut(s) 404
AcoI YGGCCR 3 cut(s) 60, 567, 1338
AcuI CTGAAG 1 cut(s) 464
AfiI CCNNNNNNNGG 2 cut(s) 935, 965
AgsI TTSAA 4 cut(s) 631, 685, 964, 1041
AjiI CACGTC 1 cut(s) 496
AjnI CCWGG 3 cut(s) 470, 675, 743
AloI GAACNNNNNNTCC 2 cut(s) 1054, 1086
AluBI AGCT 3 cut(s) 994, 1217, 1325
AluI AGCT 3 cut(s) 994, 1217, 1325
Alw21I GWGCWC 1 cut(s) 1072
Alw26I GTCTC 4 cut(s) 100, 241, 458, 919
AlwNI CAGNNNCTG 1 cut(s) 1202
Ama87I CYCGRG 3 cut(s) 944, 1013, 1175
AoxI GGCC 6 cut(s) 60, 120, 130, 360, 567, 1338
ApeKI GCWGC 3 cut(s) 779, 827, 1099
ArsI GACNNNNNNTTYG 2 cut(s) 174, 206
AspLEI GCGC 2 cut(s) 378, 406
AspS9I GGNCC 4 cut(s) 75, 120, 131, 361
AsuC2I CCSGG 4 cut(s) 43, 279, 945, 946
AsuHPI GGTGA 5 cut(s) 155, 231, 245, 584, 716
AvaI CYCGRG 3 cut(s) 944, 1013, 1175
AvaII GGWCC 1 cut(s) 75
BalI TGGCCA 1 cut(s) 1340
BanII GRGCYC 1 cut(s) 945
BauI CACGAG 1 cut(s) 1346
BbsI GAAGAC 1 cut(s) 329
Bbv12I GWGCWC 1 cut(s) 1072
BbvI GCAGC 3 cut(s) 766, 814, 1086
BccI CCATC 2 cut(s) 179, 779
BceAI ACGGC 6 cut(s) 42, 47, 145, 173, 403, 835
BcgI CGANNNNNNTGC 2 cut(s) 313, 347
BciT130I CCWGG 3 cut(s) 472, 677, 745
BclI TGATCA 1 cut(s) 1114
BcnI CCSGG 4 cut(s) 43, 279, 945, 946
BcoDI GTCTC 4 cut(s) 100, 241, 458, 919
BglII AGATCT 1 cut(s) 154
BisI GCNGC 7 cut(s) 47, 259, 399, 402, 780, 828, 1100
BlsI GCNGC 7 cut(s) 48, 260, 400, 403, 781, 829, 1101
Bme1390I CCNGG 7 cut(s) 43, 279, 472, 677, 745, 945, 946
Bme18I GGWCC 1 cut(s) 75
BmeT110I CYCGRG 3 cut(s) 944, 1013, 1175
BmgBI CACGTC 1 cut(s) 496
BmgT120I GGNCC 4 cut(s) 75, 120, 131, 361
BmiI GGNNCC 6 cut(s) 133, 223, 283, 308, 391, 849
BmrFI CCNGG 7 cut(s) 43, 279, 472, 677, 745, 945, 946
BmsI GCATC 3 cut(s) 17, 465, 898
BpiI GAAGAC 1 cut(s) 329
BpmI CTGGAG 3 cut(s) 454, 629, 1049
Bpu10I CCTNAGC 2 cut(s) 302, 995
BpuMI CCSGG 4 cut(s) 43, 279, 945, 946
Bsa29I ATCGAT 1 cut(s) 513
BsaI GGTCTC 2 cut(s) 458, 919
BsaJI CCNNGG 4 cut(s) 408, 944, 1014, 1074
BsaWI WCCGGW 1 cut(s) 218
BsaXI ACNNNNNCTCC 8 cut(s) 245, 275, 632, 662, 808, 838, 1054, 1084
Bsc4I CCNNNNNNNGG 2 cut(s) 935, 965
Bse118I RCCGGY 1 cut(s) 569
Bse1I ACTGG 1 cut(s) 166
Bse3DI GCAATG 1 cut(s) 1192
BseBI CCWGG 3 cut(s) 472, 677, 745
BseCI ATCGAT 1 cut(s) 513
BseDI CCNNGG 4 cut(s) 408, 944, 1014, 1074
BseGI GGATG 3 cut(s) 480, 790, 1256
BseLI CCNNNNNNNGG 2 cut(s) 935, 965
BseMI GCAATG 1 cut(s) 1192
BseMII CTCAG 6 cut(s) 149, 218, 316, 1009, 1149, 1227
BseNI ACTGG 1 cut(s) 166
BseRI GAGGAG 1 cut(s) 1119
BseXI GCAGC 3 cut(s) 766, 814, 1086
Bsh1236I CGCG 1 cut(s) 404
Bsh1285I CGRYCG 1 cut(s) 196
BshFI GGCC 6 cut(s) 62, 122, 132, 362, 569, 1340
BshVI ATCGAT 1 cut(s) 513
BsiEI CGRYCG 1 cut(s) 196
BsiHKAI GWGCWC 1 cut(s) 1072
BsiHKCI CYCGRG 3 cut(s) 944, 1013, 1175
BsiSI CCGG 6 cut(s) 43, 219, 279, 505, 570, 945
BslI CCNNNNNNNGG 2 cut(s) 935, 965
BsmAI GTCTC 4 cut(s) 100, 241, 458, 919
BsmBI CGTCTC 2 cut(s) 100, 241
BsmI GAATGC 1 cut(s) 841
BsnI GGCC 6 cut(s) 62, 122, 132, 362, 569, 1340
Bso31I GGTCTC 2 cut(s) 458, 919
BsoBI CYCGRG 3 cut(s) 944, 1013, 1175
Bsp1286I GDGCHC 2 cut(s) 945, 1072
Bsp143I GATC 3 cut(s) 154, 510, 1114
Bsp19I CCATGG 1 cut(s) 408
BspANI GGCC 6 cut(s) 62, 122, 132, 362, 569, 1340
BspCNI CTCAG 6 cut(s) 150, 217, 315, 1008, 1150, 1226
BspDI ATCGAT 1 cut(s) 513
BspFNI CGCG 1 cut(s) 404
BspLI GGNNCC 6 cut(s) 133, 223, 283, 308, 391, 849
BspQI GCTCTTC 2 cut(s) 626, 1175
BspTNI GGTCTC 2 cut(s) 458, 919
BsrBI CCGCTC 4 cut(s) 198, 203, 251, 261
BsrDI GCAATG 1 cut(s) 1192
BsrFI RCCGGY 1 cut(s) 569
BsrI ACTGG 1 cut(s) 166
BssAI RCCGGY 1 cut(s) 569
BssECI CCNNGG 4 cut(s) 408, 944, 1014, 1074
BssMI GATC 3 cut(s) 154, 510, 1114
BssSI CACGAG 1 cut(s) 1346
BssT1I CCWWGG 2 cut(s) 408, 1074
Bst2BI CACGAG 1 cut(s) 1346
Bst2UI CCWGG 3 cut(s) 472, 677, 745
Bst4CI ACNGT 6 cut(s) 16, 235, 1082, 1198, 1204, 1240
Bst6I CTCTTC 5 cut(s) 65, 626, 692, 1136, 1175
BstC8I GCNNGC 4 cut(s) 299, 502, 777, 792
BstDEI CTNAG 6 cut(s) 158, 204, 302, 995, 1158, 1213
BstDSI CCRYGG 1 cut(s) 408
BstF5I GGATG 3 cut(s) 480, 790, 1256
BstFNI CGCG 1 cut(s) 404
BstHHI GCGC 2 cut(s) 378, 406
BstKTI GATC 3 cut(s) 157, 513, 1117
BstMAI GTCTC 4 cut(s) 100, 241, 458, 919
BstMBI GATC 3 cut(s) 154, 510, 1114
BstMCI CGRYCG 1 cut(s) 196
BstMWI GCNNNNNNNGC 5 cut(s) 264, 410, 652, 847, 1108
BstNI CCWGG 3 cut(s) 472, 677, 745
BstNSI RCATGY 2 cut(s) 779, 1037
BstSCI CCNGG 7 cut(s) 41, 277, 470, 675, 743, 943, 944
BstUI CGCG 1 cut(s) 404
BstV1I GCAGC 3 cut(s) 766, 814, 1086
BstV2I GAAGAC 1 cut(s) 329
BstX2I RGATCY 1 cut(s) 154
BstXI CCANNNNNNTGG 1 cut(s) 751
BstYI RGATCY 1 cut(s) 154
Bsu15I ATCGAT 1 cut(s) 513
BsuRI GGCC 6 cut(s) 62, 122, 132, 362, 569, 1340
BsuTUI ATCGAT 1 cut(s) 513
BtgI CCRYGG 1 cut(s) 408
BtrI CACGTC 1 cut(s) 496
BtsCI GGATG 3 cut(s) 480, 790, 1256
BtsI GCAGTG 1 cut(s) 956
BtsIMutI CAGTG 3 cut(s) 956, 1200, 1245
Cac8I GCNNGC 4 cut(s) 299, 502, 777, 792
CaiI CAGNNNCTG 1 cut(s) 1202
CfoI GCGC 2 cut(s) 378, 406
Cfr10I RCCGGY 1 cut(s) 569
Cfr13I GGNCC 4 cut(s) 75, 120, 131, 361
Cfr9I CCCGGG 1 cut(s) 944
ClaI ATCGAT 1 cut(s) 513
CseI GACGC 1 cut(s) 441
DdeI CTNAG 6 cut(s) 158, 204, 302, 995, 1158, 1213
DpnI GATC 3 cut(s) 156, 512, 1116
DpnII GATC 3 cut(s) 154, 510, 1114
EaeI YGGCCR 3 cut(s) 60, 567, 1338
Eam1104I CTCTTC 5 cut(s) 65, 626, 692, 1136, 1175
EarI CTCTTC 5 cut(s) 65, 626, 692, 1136, 1175
EciI GGCGGA 1 cut(s) 88
Eco130I CCWWGG 2 cut(s) 408, 1074
Eco24I GRGCYC 1 cut(s) 945
Eco31I GGTCTC 2 cut(s) 458, 919
Eco47I GGWCC 1 cut(s) 75
Eco57I CTGAAG 1 cut(s) 464
Eco88I CYCGRG 3 cut(s) 944, 1013, 1175
EcoRII CCWGG 3 cut(s) 470, 675, 743
EcoT14I CCWWGG 2 cut(s) 408, 1074
EcoT22I ATGCAT 1 cut(s) 811
EcoT38I GRGCYC 1 cut(s) 945
ErhI CCWWGG 2 cut(s) 408, 1074
Esp3I CGTCTC 2 cut(s) 100, 241
FauI CCCGC 1 cut(s) 272
FauNDI CATATG 1 cut(s) 1168
FbaI TGATCA 1 cut(s) 1114
FblI GTMKAC 1 cut(s) 192
Fnu4HI GCNGC 7 cut(s) 47, 259, 399, 402, 780, 828, 1100
FokI GGATG 3 cut(s) 487, 797, 1243
FriOI GRGCYC 1 cut(s) 945
Fsp4HI GCNGC 7 cut(s) 47, 259, 399, 402, 780, 828, 1100
GlaI GCGC 2 cut(s) 377, 405
GluI GCNGC 7 cut(s) 47, 259, 399, 402, 780, 828, 1100
GsuI CTGGAG 3 cut(s) 454, 629, 1049
HaeIII GGCC 6 cut(s) 62, 122, 132, 362, 569, 1340
HapII CCGG 6 cut(s) 43, 219, 279, 505, 570, 945
HgaI GACGC 1 cut(s) 441
HhaI GCGC 2 cut(s) 378, 406
Hin6I GCGC 2 cut(s) 376, 404
HinP1I GCGC 2 cut(s) 376, 404
HincII GTYRAC 2 cut(s) 193, 1234
HindII GTYRAC 2 cut(s) 193, 1234
HinfI GANTC 3 cut(s) 160, 1211, 1349
HpaII CCGG 6 cut(s) 43, 219, 279, 505, 570, 945
HphI GGTGA 5 cut(s) 155, 231, 245, 584, 716
Hpy166II GTNNAC 7 cut(s) 78, 193, 417, 493, 879, 1164, 1234
Hpy188I TCNGA 7 cut(s) 159, 176, 207, 435, 527, 847, 987
Hpy188III TCNNGA 6 cut(s) 67, 997, 1013, 1028, 1118, 1177
Hpy8I GTNNAC 7 cut(s) 78, 193, 417, 493, 879, 1164, 1234
Hpy99I CGWCG 8 cut(s) 40, 59, 68, 128, 131, 194, 353, 457
HpyAV CCTTC 8 cut(s) 320, 454, 532, 596, 682, 686, 754, 1284
HpyCH4III ACNGT 6 cut(s) 16, 235, 1082, 1198, 1204, 1240
HpyCH4IV ACGT 1 cut(s) 495
HpyCH4V TGCA 5 cut(s) 809, 1094, 1111, 1287, 1345
HpyF10VI GCNNNNNNNGC 5 cut(s) 264, 410, 652, 847, 1108
HpyF3I CTNAG 6 cut(s) 158, 204, 302, 995, 1158, 1213
HpySE526I ACGT 1 cut(s) 495
HspAI GCGC 2 cut(s) 376, 404
Ksp22I TGATCA 1 cut(s) 1114
Kzo9I GATC 3 cut(s) 154, 510, 1114
LguI GCTCTTC 2 cut(s) 626, 1175
LmnI GCTCC 7 cut(s) 203, 221, 266, 395, 847, 1030, 1075
Lsp1109I GCAGC 3 cut(s) 766, 814, 1086
LweI GCATC 3 cut(s) 17, 465, 898
MaeII ACGT 1 cut(s) 495
MaeIII GTNAC 2 cut(s) 161, 1198
MalI GATC 3 cut(s) 156, 512, 1116
MbiI CCGCTC 4 cut(s) 198, 203, 251, 261
MboI GATC 3 cut(s) 154, 510, 1114
MboII GAAGA 9 cut(s) 82, 225, 329, 520, 643, 697, 709, 1153, 1192
MflI RGATCY 1 cut(s) 154
MhlI GDGCHC 2 cut(s) 945, 1072
MlsI TGGCCA 1 cut(s) 1340
MluCI AATT 5 cut(s) 575, 584, 626, 871, 1005
MluNI TGGCCA 1 cut(s) 1340
MlyI GAGTC 2 cut(s) 169, 1205
MmeI TCCRAC 4 cut(s) 413, 505, 1188, 1227
Mox20I TGGCCA 1 cut(s) 1340
Mph1103I ATGCAT 1 cut(s) 811
MscI TGGCCA 1 cut(s) 1340
MseI TTAA 2 cut(s) 990, 1354
MslI CAYNNNNRTG 2 cut(s) 906, 1311
Msp20I TGGCCA 1 cut(s) 1340
MspA1I CMGCKG 1 cut(s) 1217
MspI CCGG 6 cut(s) 43, 219, 279, 505, 570, 945
MspR9I CCNGG 7 cut(s) 43, 279, 472, 677, 745, 945, 946
Mva1269I GAATGC 1 cut(s) 841
MvaI CCWGG 3 cut(s) 472, 677, 745
MvnI CGCG 1 cut(s) 404
MwoI GCNNNNNNNGC 5 cut(s) 264, 410, 652, 847, 1108
NciI CCSGG 4 cut(s) 43, 279, 945, 946
NcoI CCATGG 1 cut(s) 408
NdeI CATATG 1 cut(s) 1168
NdeII GATC 3 cut(s) 154, 510, 1114
NlaIV GGNNCC 6 cut(s) 133, 223, 283, 308, 391, 849
NmuCI GTSAC 2 cut(s) 161, 1198
NsiI ATGCAT 1 cut(s) 811
NspI RCATGY 2 cut(s) 779, 1037
PaeI GCATGC 1 cut(s) 779
PaeR7I CTCGAG 1 cut(s) 1175
PciSI GCTCTTC 2 cut(s) 626, 1175
PcsI WCGNNNNNNNCGW 3 cut(s) 32, 63, 99
PctI GAATGC 1 cut(s) 841
PfoI TCCNGGA 1 cut(s) 470
PkrI GCNGC 7 cut(s) 48, 260, 400, 403, 781, 829, 1101
PleI GAGTC 2 cut(s) 168, 1205
PpsI GAGTC 2 cut(s) 168, 1205
Psp6I CCWGG 3 cut(s) 470, 675, 743
PspGI CCWGG 3 cut(s) 470, 675, 743
PspN4I GGNNCC 6 cut(s) 133, 223, 283, 308, 391, 849
PspPI GGNCC 4 cut(s) 75, 120, 131, 361
PstNI CAGNNNCTG 1 cut(s) 1202
PsuI RGATCY 1 cut(s) 154
PvuII CAGCTG 1 cut(s) 1217
RseI CAYNNNNRTG 2 cut(s) 906, 1311
SalI GTCGAC 1 cut(s) 191
SapI GCTCTTC 2 cut(s) 626, 1175
SaqAI TTAA 2 cut(s) 990, 1354
SatI GCNGC 7 cut(s) 47, 259, 399, 402, 780, 828, 1100
Sau3AI GATC 3 cut(s) 154, 510, 1114
Sau96I GGNCC 4 cut(s) 75, 120, 131, 361
SchI GAGTC 2 cut(s) 169, 1205
ScrFI CCNGG 7 cut(s) 43, 279, 472, 677, 745, 945, 946
SduI GDGCHC 2 cut(s) 945, 1072
SfaNI GCATC 3 cut(s) 17, 465, 898
Sfr274I CTCGAG 1 cut(s) 1175
SinI GGWCC 1 cut(s) 75
SlaI CTCGAG 1 cut(s) 1175
SmaI CCCGGG 1 cut(s) 946
SmiMI CAYNNNNRTG 2 cut(s) 906, 1311
SmlI CTYRAG 1 cut(s) 1175
SmoI CTYRAG 1 cut(s) 1175
SphI GCATGC 1 cut(s) 779
SrfI GCCCGGGC 1 cut(s) 946
Sse9I AATT 5 cut(s) 575, 584, 626, 871, 1005
StyD4I CCNGG 7 cut(s) 41, 277, 470, 675, 743, 943, 944
StyI CCWWGG 2 cut(s) 408, 1074
TaaI ACNGT 6 cut(s) 16, 235, 1082, 1198, 1204, 1240
TaiI ACGT 1 cut(s) 498
TaqI TCGA 9 cut(s) 11, 66, 87, 192, 447, 455, 513, 1056, 1176
TaqII GACCGA 2 cut(s) 323, 943
TasI AATT 5 cut(s) 575, 584, 626, 871, 1005
TauI GCSGC 4 cut(s) 49, 261, 401, 404
Tru1I TTAA 2 cut(s) 990, 1354
Tru9I TTAA 2 cut(s) 990, 1354
TscAI CASTG 3 cut(s) 956, 1207, 1245
TseFI GTSAC 2 cut(s) 161, 1198
TseI GCWGC 3 cut(s) 779, 827, 1099
Tsp45I GTSAC 2 cut(s) 161, 1198
TspDTI ATGAA 4 cut(s) 473, 890, 1295, 1329
TspMI CCCGGG 1 cut(s) 944
TspRI CASTG 3 cut(s) 956, 1207, 1245
VpaK11BI GGWCC 1 cut(s) 75
XceI RCATGY 2 cut(s) 779, 1037
XcmI CCANNNNNNNNNTGG 1 cut(s) 751
XhoI CTCGAG 1 cut(s) 1175
XmaI CCCGGG 1 cut(s) 944
XmiI GTMKAC 1 cut(s) 192
Zsp2I ATGCAT 1 cut(s) 811
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.