Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 584 |
| AclWI | GGATC | 1 cut(s) | 619 |
| AcsI | RAATTY | 1 cut(s) | 284 |
| AdeI | CACNNNGTG | 1 cut(s) | 584 |
| AfaI | GTAC | 4 cut(s) | 184, 394, 415, 643 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 19, 584 |
| AflIII | ACRYGT | 1 cut(s) | 670 |
| AgsI | TTSAA | 4 cut(s) | 35, 161, 232, 667 |
| AjnI | CCWGG | 1 cut(s) | 318 |
| AluBI | AGCT | 1 cut(s) | 522 |
| AluI | AGCT | 1 cut(s) | 522 |
| Alw26I | GTCTC | 1 cut(s) | 700 |
| AlwI | GGATC | 1 cut(s) | 619 |
| Ama87I | CYCGRG | 2 cut(s) | 12, 78 |
| ApoI | RAATTY | 1 cut(s) | 284 |
| AseI | ATTAAT | 1 cut(s) | 237 |
| AspLEI | GCGC | 1 cut(s) | 517 |
| AspS9I | GGNCC | 1 cut(s) | 430 |
| AsuC2I | CCSGG | 2 cut(s) | 13, 14 |
| AvaI | CYCGRG | 2 cut(s) | 12, 78 |
| AvaII | GGWCC | 1 cut(s) | 430 |
| AxyI | CCTNAGG | 1 cut(s) | 435 |
| BaeGI | GKGCMC | 1 cut(s) | 556 |
| BccI | CCATC | 2 cut(s) | 121, 124 |
| BciT130I | CCWGG | 1 cut(s) | 320 |
| BcnI | CCSGG | 2 cut(s) | 13, 14 |
| BcoDI | GTCTC | 1 cut(s) | 700 |
| BfmI | CTRYAG | 1 cut(s) | 220 |
| Bme1390I | CCNGG | 3 cut(s) | 13, 14, 320 |
| Bme18I | GGWCC | 1 cut(s) | 430 |
| BmeT110I | CYCGRG | 2 cut(s) | 12, 78 |
| BmgT120I | GGNCC | 1 cut(s) | 430 |
| BmiI | GGNNCC | 1 cut(s) | 432 |
| BmrFI | CCNGG | 3 cut(s) | 13, 14, 320 |
| BmrI | ACTGGG | 1 cut(s) | 550 |
| BmsI | GCATC | 1 cut(s) | 286 |
| BmuI | ACTGGG | 1 cut(s) | 550 |
| BpmI | CTGGAG | 1 cut(s) | 446 |
| BpuEI | CTTGAG | 1 cut(s) | 387 |
| BpuMI | CCSGG | 2 cut(s) | 13, 14 |
| BsaBI | GATNNNNATC | 1 cut(s) | 96 |
| BsaJI | CCNNGG | 2 cut(s) | 12, 13 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 187, 217 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 19, 584 |
| Bse1I | ACTGG | 1 cut(s) | 556 |
| Bse21I | CCTNAGG | 1 cut(s) | 435 |
| Bse3DI | GCAATG | 1 cut(s) | 145 |
| Bse8I | GATNNNNATC | 1 cut(s) | 96 |
| BseBI | CCWGG | 1 cut(s) | 320 |
| BseDI | CCNNGG | 2 cut(s) | 12, 13 |
| BseGI | GGATG | 2 cut(s) | 463, 560 |
| BseJI | GATNNNNATC | 1 cut(s) | 96 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 19, 584 |
| BseMI | GCAATG | 1 cut(s) | 145 |
| BseNI | ACTGG | 1 cut(s) | 556 |
| BseSI | GKGCMC | 1 cut(s) | 556 |
| BsiHKCI | CYCGRG | 2 cut(s) | 12, 78 |
| BsiSI | CCGG | 1 cut(s) | 13 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 19, 584 |
| BsmAI | GTCTC | 1 cut(s) | 700 |
| BsoBI | CYCGRG | 2 cut(s) | 12, 78 |
| Bsp1286I | GDGCHC | 1 cut(s) | 556 |
| Bsp1407I | TGTACA | 1 cut(s) | 641 |
| Bsp143I | GATC | 4 cut(s) | 6, 97, 328, 624 |
| BspLI | GGNNCC | 1 cut(s) | 432 |
| BspMAI | CTGCAG | 1 cut(s) | 224 |
| BspPI | GGATC | 1 cut(s) | 619 |
| BsrDI | GCAATG | 1 cut(s) | 145 |
| BsrGI | TGTACA | 1 cut(s) | 641 |
| BsrI | ACTGG | 1 cut(s) | 556 |
| BssECI | CCNNGG | 2 cut(s) | 12, 13 |
| BssMI | GATC | 4 cut(s) | 6, 97, 328, 624 |
| Bst2UI | CCWGG | 1 cut(s) | 320 |
| Bst4CI | ACNGT | 2 cut(s) | 473, 548 |
| Bst6I | CTCTTC | 1 cut(s) | 606 |
| BstAUI | TGTACA | 1 cut(s) | 641 |
| BstC8I | GCNNGC | 1 cut(s) | 224 |
| BstDEI | CTNAG | 2 cut(s) | 435, 659 |
| BstF5I | GGATG | 2 cut(s) | 463, 560 |
| BstHHI | GCGC | 1 cut(s) | 517 |
| BstKTI | GATC | 4 cut(s) | 9, 100, 331, 627 |
| BstMAI | GTCTC | 1 cut(s) | 700 |
| BstMBI | GATC | 4 cut(s) | 6, 97, 328, 624 |
| BstNI | CCWGG | 1 cut(s) | 320 |
| BstNSI | RCATGY | 1 cut(s) | 674 |
| BstSCI | CCNGG | 3 cut(s) | 11, 12, 318 |
| BstSFI | CTRYAG | 1 cut(s) | 220 |
| BstSLI | GKGCMC | 1 cut(s) | 556 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 367 |
| Bsu36I | CCTNAGG | 1 cut(s) | 435 |
| BtsCI | GGATG | 2 cut(s) | 463, 560 |
| BtsI | GCAGTG | 1 cut(s) | 217 |
| BtsIMutI | CAGTG | 2 cut(s) | 217, 478 |
| Cac8I | GCNNGC | 1 cut(s) | 224 |
| CfoI | GCGC | 1 cut(s) | 517 |
| Cfr13I | GGNCC | 1 cut(s) | 430 |
| Cfr9I | CCCGGG | 1 cut(s) | 12 |
| Csp6I | GTAC | 4 cut(s) | 183, 393, 414, 642 |
| CviAII | CATG | 5 cut(s) | 208, 367, 599, 650, 671 |
| CviJI | RGCY | 6 cut(s) | 47, 212, 377, 522, 542, 686 |
| CviKI_1 | RGCY | 6 cut(s) | 47, 212, 377, 522, 542, 686 |
| CviQI | GTAC | 4 cut(s) | 183, 393, 414, 642 |
| DdeI | CTNAG | 2 cut(s) | 435, 659 |
| DpnI | GATC | 4 cut(s) | 8, 99, 330, 626 |
| DpnII | GATC | 4 cut(s) | 6, 97, 328, 624 |
| DraIII | CACNNNGTG | 1 cut(s) | 584 |
| Eam1104I | CTCTTC | 1 cut(s) | 606 |
| EarI | CTCTTC | 1 cut(s) | 606 |
| Eco47I | GGWCC | 1 cut(s) | 430 |
| Eco81I | CCTNAGG | 1 cut(s) | 435 |
| Eco88I | CYCGRG | 2 cut(s) | 12, 78 |
| EcoO109I | RGGNCCY | 1 cut(s) | 430 |
| EcoRII | CCWGG | 1 cut(s) | 318 |
| FaeI | CATG | 5 cut(s) | 211, 370, 602, 653, 674 |
| FatI | CATG | 5 cut(s) | 207, 366, 598, 649, 670 |
| FokI | GGATG | 2 cut(s) | 470, 547 |
| GlaI | GCGC | 1 cut(s) | 516 |
| GsuI | CTGGAG | 1 cut(s) | 446 |
| HapII | CCGG | 1 cut(s) | 13 |
| HhaI | GCGC | 1 cut(s) | 517 |
| Hin1II | CATG | 5 cut(s) | 211, 370, 602, 653, 674 |
| Hin6I | GCGC | 1 cut(s) | 515 |
| HinP1I | GCGC | 1 cut(s) | 515 |
| HincII | GTYRAC | 2 cut(s) | 469, 676 |
| HindII | GTYRAC | 2 cut(s) | 469, 676 |
| HinfI | GANTC | 2 cut(s) | 81, 244 |
| HpaII | CCGG | 1 cut(s) | 13 |
| Hpy166II | GTNNAC | 3 cut(s) | 183, 469, 676 |
| Hpy188I | TCNGA | 1 cut(s) | 591 |
| Hpy188III | TCNNGA | 2 cut(s) | 404, 425 |
| Hpy8I | GTNNAC | 3 cut(s) | 183, 469, 676 |
| HpyAV | CCTTC | 2 cut(s) | 258, 367 |
| HpyCH4III | ACNGT | 2 cut(s) | 473, 548 |
| HpyCH4V | TGCA | 3 cut(s) | 104, 222, 255 |
| HpyF3I | CTNAG | 2 cut(s) | 435, 659 |
| Hsp92II | CATG | 5 cut(s) | 211, 370, 602, 653, 674 |
| HspAI | GCGC | 1 cut(s) | 515 |
| Kzo9I | GATC | 4 cut(s) | 6, 97, 328, 624 |
| LmnI | GCTCC | 3 cut(s) | 527, 532, 658 |
| LweI | GCATC | 1 cut(s) | 286 |
| MaeIII | GTNAC | 2 cut(s) | 203, 215 |
| MalI | GATC | 4 cut(s) | 8, 99, 330, 626 |
| MboI | GATC | 4 cut(s) | 6, 97, 328, 624 |
| MboII | GAAGA | 5 cut(s) | 111, 244, 305, 506, 623 |
| MfeI | CAATTG | 1 cut(s) | 156 |
| MhlI | GDGCHC | 1 cut(s) | 556 |
| MluCI | AATT | 5 cut(s) | 36, 62, 110, 156, 284 |
| MlyI | GAGTC | 1 cut(s) | 90 |
| MnlI | CCTC | 7 cut(s) | 189, 301, 383, 421, 448, 495, 607 |
| MseI | TTAA | 2 cut(s) | 237, 703 |
| MslI | CAYNNNNRTG | 1 cut(s) | 365 |
| MspI | CCGG | 1 cut(s) | 13 |
| MspR9I | CCNGG | 3 cut(s) | 13, 14, 320 |
| MunI | CAATTG | 1 cut(s) | 156 |
| MvaI | CCWGG | 1 cut(s) | 320 |
| NciI | CCSGG | 2 cut(s) | 13, 14 |
| NdeII | GATC | 4 cut(s) | 6, 97, 328, 624 |
| NlaIII | CATG | 5 cut(s) | 211, 370, 602, 653, 674 |
| NlaIV | GGNNCC | 1 cut(s) | 432 |
| NmuCI | GTSAC | 2 cut(s) | 203, 215 |
| NspI | RCATGY | 1 cut(s) | 674 |
| PaeR7I | CTCGAG | 1 cut(s) | 78 |
| PciI | ACATGT | 1 cut(s) | 670 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 15 |
| PfeI | GAWTC | 1 cut(s) | 244 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 584 |
| PleI | GAGTC | 1 cut(s) | 89 |
| PpsI | GAGTC | 1 cut(s) | 89 |
| PpuMI | RGGWCCY | 1 cut(s) | 430 |
| PscI | ACATGT | 1 cut(s) | 670 |
| PshBI | ATTAAT | 1 cut(s) | 237 |
| Psp5II | RGGWCCY | 1 cut(s) | 430 |
| Psp6I | CCWGG | 1 cut(s) | 318 |
| PspGI | CCWGG | 1 cut(s) | 318 |
| PspN4I | GGNNCC | 1 cut(s) | 432 |
| PspPI | GGNCC | 1 cut(s) | 430 |
| PspPPI | RGGWCCY | 1 cut(s) | 430 |
| PspXI | VCTCGAGB | 1 cut(s) | 78 |
| PstI | CTGCAG | 1 cut(s) | 224 |
| RsaI | GTAC | 4 cut(s) | 184, 394, 415, 643 |
| RsaNI | GTAC | 4 cut(s) | 183, 393, 414, 642 |
| RseI | CAYNNNNRTG | 1 cut(s) | 365 |
| SaqAI | TTAA | 2 cut(s) | 237, 703 |
| Sau3AI | GATC | 4 cut(s) | 6, 97, 328, 624 |
| Sau96I | GGNCC | 1 cut(s) | 430 |
| SchI | GAGTC | 1 cut(s) | 90 |
| ScrFI | CCNGG | 3 cut(s) | 13, 14, 320 |
| SduI | GDGCHC | 1 cut(s) | 556 |
| SetI | ASST | 6 cut(s) | 312, 394, 441, 524, 649, 665 |
| SfaNI | GCATC | 1 cut(s) | 286 |
| SfcI | CTRYAG | 1 cut(s) | 220 |
| Sfr274I | CTCGAG | 1 cut(s) | 78 |
| SinI | GGWCC | 1 cut(s) | 430 |
| SlaI | CTCGAG | 1 cut(s) | 78 |
| SmaI | CCCGGG | 1 cut(s) | 14 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 365 |
| SmlI | CTYRAG | 2 cut(s) | 78, 402 |
| SmoI | CTYRAG | 2 cut(s) | 78, 402 |
| Sse9I | AATT | 5 cut(s) | 36, 62, 110, 156, 284 |
| SspI | AATATT | 1 cut(s) | 620 |
| StyD4I | CCNGG | 3 cut(s) | 11, 12, 318 |
| TaaI | ACNGT | 2 cut(s) | 473, 548 |
| TaqI | TCGA | 1 cut(s) | 79 |
| TasI | AATT | 5 cut(s) | 36, 62, 110, 156, 284 |
| TatI | WGTACW | 2 cut(s) | 182, 641 |
| TfiI | GAWTC | 1 cut(s) | 244 |
| Tru1I | TTAA | 2 cut(s) | 237, 703 |
| Tru9I | TTAA | 2 cut(s) | 237, 703 |
| TscAI | CASTG | 2 cut(s) | 224, 478 |
| TseFI | GTSAC | 2 cut(s) | 203, 215 |
| Tsp45I | GTSAC | 2 cut(s) | 203, 215 |
| TspDTI | ATGAA | 3 cut(s) | 369, 431, 507 |
| TspMI | CCCGGG | 1 cut(s) | 12 |
| TspRI | CASTG | 2 cut(s) | 224, 478 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 584 |
| VpaK11BI | GGWCC | 1 cut(s) | 430 |
| VspI | ATTAAT | 1 cut(s) | 237 |
| XapI | RAATTY | 1 cut(s) | 284 |
| XceI | RCATGY | 1 cut(s) | 674 |
| XhoI | CTCGAG | 1 cut(s) | 78 |
| XmaI | CCCGGG | 1 cut(s) | 12 |