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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 490 |
| AccB1I | GGYRCC | 1 cut(s) | 43 |
| AcyI | GRCGYC | 1 cut(s) | 44 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 560 |
| AgsI | TTSAA | 3 cut(s) | 173, 221, 419 |
| AhlI | ACTAGT | 1 cut(s) | 119 |
| AjnI | CCWGG | 2 cut(s) | 210, 494 |
| AleI | CACNNNNGTG | 1 cut(s) | 317 |
| AluBI | AGCT | 4 cut(s) | 176, 344, 352, 605 |
| AluI | AGCT | 4 cut(s) | 176, 344, 352, 605 |
| Alw26I | GTCTC | 1 cut(s) | 663 |
| Ama87I | CYCGRG | 1 cut(s) | 553 |
| ApeKI | GCWGC | 4 cut(s) | 29, 296, 341, 581 |
| AseI | ATTAAT | 1 cut(s) | 144 |
| AspLEI | GCGC | 1 cut(s) | 46 |
| AspS9I | GGNCC | 3 cut(s) | 442, 492, 563 |
| AsuC2I | CCSGG | 2 cut(s) | 554, 555 |
| AsuHPI | GGTGA | 2 cut(s) | 234, 533 |
| AvaI | CYCGRG | 1 cut(s) | 553 |
| AvaII | GGWCC | 3 cut(s) | 442, 492, 563 |
| BanI | GGYRCC | 1 cut(s) | 43 |
| BbsI | GAAGAC | 2 cut(s) | 150, 534 |
| BbvI | GCAGC | 4 cut(s) | 16, 283, 353, 593 |
| BccI | CCATC | 2 cut(s) | 428, 626 |
| BceAI | ACGGC | 1 cut(s) | 179 |
| BciT130I | CCWGG | 2 cut(s) | 212, 496 |
| BcnI | CCSGG | 2 cut(s) | 554, 555 |
| BcoDI | GTCTC | 1 cut(s) | 663 |
| BcuI | ACTAGT | 1 cut(s) | 119 |
| BfaI | CTAG | 5 cut(s) | 105, 120, 471, 587, 606 |
| BfmI | CTRYAG | 2 cut(s) | 297, 540 |
| BfoI | RGCGCY | 1 cut(s) | 47 |
| BisI | GCNGC | 4 cut(s) | 30, 297, 342, 582 |
| BlsI | GCNGC | 4 cut(s) | 31, 298, 343, 583 |
| Bme1390I | CCNGG | 4 cut(s) | 212, 496, 554, 555 |
| Bme18I | GGWCC | 3 cut(s) | 442, 492, 563 |
| BmeT110I | CYCGRG | 1 cut(s) | 553 |
| BmgT120I | GGNCC | 3 cut(s) | 442, 492, 563 |
| BmiI | GGNNCC | 1 cut(s) | 45 |
| BmrFI | CCNGG | 4 cut(s) | 212, 496, 554, 555 |
| BmsI | GCATC | 1 cut(s) | 16 |
| BpiI | GAAGAC | 2 cut(s) | 150, 534 |
| BpuEI | CTTGAG | 1 cut(s) | 552 |
| BpuMI | CCSGG | 2 cut(s) | 554, 555 |
| BsaHI | GRCGYC | 1 cut(s) | 44 |
| BsaJI | CCNNGG | 3 cut(s) | 382, 552, 553 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 560 |
| BseBI | CCWGG | 2 cut(s) | 212, 496 |
| BseDI | CCNNGG | 3 cut(s) | 382, 552, 553 |
| BseGI | GGATG | 1 cut(s) | 547 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 560 |
| BseMII | CTCAG | 2 cut(s) | 126, 228 |
| BseXI | GCAGC | 4 cut(s) | 16, 283, 353, 593 |
| BsgI | GTGCAG | 1 cut(s) | 33 |
| BshNI | GGYRCC | 1 cut(s) | 43 |
| BsiHKCI | CYCGRG | 1 cut(s) | 553 |
| BsiSI | CCGG | 1 cut(s) | 554 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 560 |
| BsmAI | GTCTC | 1 cut(s) | 663 |
| BsoBI | CYCGRG | 1 cut(s) | 553 |
| Bsp143I | GATC | 1 cut(s) | 544 |
| Bsp19I | CCATGG | 1 cut(s) | 382 |
| BspCNI | CTCAG | 2 cut(s) | 127, 229 |
| BspLI | GGNNCC | 1 cut(s) | 45 |
| BspMAI | CTGCAG | 1 cut(s) | 301 |
| BspT107I | GGYRCC | 1 cut(s) | 43 |
| BssECI | CCNNGG | 3 cut(s) | 382, 552, 553 |
| BssMI | GATC | 1 cut(s) | 544 |
| BssNI | GRCGYC | 1 cut(s) | 44 |
| BssT1I | CCWWGG | 1 cut(s) | 382 |
| Bst2UI | CCWGG | 2 cut(s) | 212, 496 |
| Bst4CI | ACNGT | 1 cut(s) | 492 |
| Bst6I | CTCTTC | 1 cut(s) | 510 |
| BstACI | GRCGYC | 1 cut(s) | 44 |
| BstC8I | GCNNGC | 3 cut(s) | 48, 294, 612 |
| BstDEI | CTNAG | 4 cut(s) | 135, 237, 576, 654 |
| BstDSI | CCRYGG | 1 cut(s) | 382 |
| BstF5I | GGATG | 1 cut(s) | 547 |
| BstH2I | RGCGCY | 1 cut(s) | 47 |
| BstHHI | GCGC | 1 cut(s) | 46 |
| BstKTI | GATC | 1 cut(s) | 547 |
| BstMAI | GTCTC | 1 cut(s) | 663 |
| BstMBI | GATC | 1 cut(s) | 544 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 95, 611 |
| BstNI | CCWGG | 2 cut(s) | 212, 496 |
| BstSCI | CCNGG | 4 cut(s) | 210, 494, 552, 553 |
| BstSFI | CTRYAG | 2 cut(s) | 297, 540 |
| BstV1I | GCAGC | 4 cut(s) | 16, 283, 353, 593 |
| BstV2I | GAAGAC | 2 cut(s) | 150, 534 |
| BtgI | CCRYGG | 1 cut(s) | 382 |
| BtsCI | GGATG | 1 cut(s) | 547 |
| Cac8I | GCNNGC | 3 cut(s) | 48, 294, 612 |
| CfoI | GCGC | 1 cut(s) | 46 |
| Cfr13I | GGNCC | 3 cut(s) | 442, 492, 563 |
| Cfr9I | CCCGGG | 1 cut(s) | 553 |
| CviAII | CATG | 2 cut(s) | 383, 446 |
| DdeI | CTNAG | 4 cut(s) | 135, 237, 576, 654 |
| DinI | GGCGCC | 1 cut(s) | 45 |
| DpnI | GATC | 1 cut(s) | 546 |
| DpnII | GATC | 1 cut(s) | 544 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 490 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 490 |
| Eam1104I | CTCTTC | 1 cut(s) | 510 |
| EarI | CTCTTC | 1 cut(s) | 510 |
| Eco130I | CCWWGG | 1 cut(s) | 382 |
| Eco47I | GGWCC | 3 cut(s) | 442, 492, 563 |
| Eco88I | CYCGRG | 1 cut(s) | 553 |
| EcoRII | CCWGG | 2 cut(s) | 210, 494 |
| EcoT14I | CCWWGG | 1 cut(s) | 382 |
| EgeI | GGCGCC | 1 cut(s) | 45 |
| EheI | GGCGCC | 1 cut(s) | 45 |
| ErhI | CCWWGG | 1 cut(s) | 382 |
| FaeI | CATG | 2 cut(s) | 386, 449 |
| FaiI | YATR | 8 cut(s) | 8, 84, 329, 331, 356, 384, 447, 509 |
| FatI | CATG | 2 cut(s) | 382, 445 |
| FauNDI | CATATG | 1 cut(s) | 329 |
| Fnu4HI | GCNGC | 4 cut(s) | 30, 297, 342, 582 |
| FokI | GGATG | 1 cut(s) | 534 |
| Fsp4HI | GCNGC | 4 cut(s) | 30, 297, 342, 582 |
| FspBI | CTAG | 5 cut(s) | 105, 120, 471, 587, 606 |
| GlaI | GCGC | 1 cut(s) | 45 |
| GluI | GCNGC | 4 cut(s) | 30, 297, 342, 582 |
| HaeII | RGCGCY | 1 cut(s) | 47 |
| HapII | CCGG | 1 cut(s) | 554 |
| HhaI | GCGC | 1 cut(s) | 46 |
| Hin1I | GRCGYC | 1 cut(s) | 44 |
| Hin1II | CATG | 2 cut(s) | 386, 449 |
| Hin6I | GCGC | 1 cut(s) | 44 |
| HinP1I | GCGC | 1 cut(s) | 44 |
| HincII | GTYRAC | 1 cut(s) | 259 |
| HindII | GTYRAC | 1 cut(s) | 259 |
| HinfI | GANTC | 2 cut(s) | 239, 572 |
| HpaII | CCGG | 1 cut(s) | 554 |
| HphI | GGTGA | 2 cut(s) | 234, 533 |
| Hpy166II | GTNNAC | 1 cut(s) | 259 |
| Hpy188III | TCNNGA | 2 cut(s) | 105, 569 |
| Hpy8I | GTNNAC | 1 cut(s) | 259 |
| HpyAV | CCTTC | 2 cut(s) | 85, 661 |
| HpyCH4III | ACNGT | 1 cut(s) | 492 |
| HpyCH4IV | ACGT | 1 cut(s) | 314 |
| HpyCH4V | TGCA | 5 cut(s) | 10, 50, 299, 368, 614 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 95, 611 |
| HpyF3I | CTNAG | 4 cut(s) | 135, 237, 576, 654 |
| HpySE526I | ACGT | 1 cut(s) | 314 |
| Hsp92I | GRCGYC | 1 cut(s) | 44 |
| Hsp92II | CATG | 2 cut(s) | 386, 449 |
| HspAI | GCGC | 1 cut(s) | 44 |
| KasI | GGCGCC | 1 cut(s) | 43 |
| Kzo9I | GATC | 1 cut(s) | 544 |
| LmnI | GCTCC | 2 cut(s) | 181, 474 |
| Lsp1109I | GCAGC | 4 cut(s) | 16, 283, 353, 593 |
| LweI | GCATC | 1 cut(s) | 16 |
| MaeI | CTAG | 5 cut(s) | 105, 120, 471, 587, 606 |
| MaeII | ACGT | 1 cut(s) | 314 |
| MaeIII | GTNAC | 5 cut(s) | 115, 240, 267, 310, 461 |
| MalI | GATC | 1 cut(s) | 546 |
| MboI | GATC | 1 cut(s) | 544 |
| MboII | GAAGA | 5 cut(s) | 150, 347, 401, 527, 539 |
| MluCI | AATT | 5 cut(s) | 141, 249, 306, 363, 591 |
| Mly113I | GGCGCC | 1 cut(s) | 44 |
| MlyI | GAGTC | 1 cut(s) | 248 |
| MnlI | CCTC | 8 cut(s) | 120, 255, 352, 505, 511, 517, 576, 616 |
| MseI | TTAA | 2 cut(s) | 144, 673 |
| MslI | CAYNNNNRTG | 1 cut(s) | 317 |
| MspI | CCGG | 1 cut(s) | 554 |
| MspR9I | CCNGG | 4 cut(s) | 212, 496, 554, 555 |
| MvaI | CCWGG | 2 cut(s) | 212, 496 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 95, 611 |
| NarI | GGCGCC | 1 cut(s) | 44 |
| NciI | CCSGG | 2 cut(s) | 554, 555 |
| NcoI | CCATGG | 1 cut(s) | 382 |
| NdeI | CATATG | 1 cut(s) | 329 |
| NdeII | GATC | 1 cut(s) | 544 |
| NlaIII | CATG | 2 cut(s) | 386, 449 |
| NlaIV | GGNNCC | 1 cut(s) | 45 |
| NmuCI | GTSAC | 3 cut(s) | 240, 310, 461 |
| OliI | CACNNNNGTG | 1 cut(s) | 317 |
| PfeI | GAWTC | 1 cut(s) | 572 |
| PfoI | TCCNGGA | 1 cut(s) | 494 |
| PkrI | GCNGC | 4 cut(s) | 31, 298, 343, 583 |
| PleI | GAGTC | 1 cut(s) | 247 |
| PluTI | GGCGCC | 1 cut(s) | 47 |
| PpsI | GAGTC | 1 cut(s) | 247 |
| PshBI | ATTAAT | 1 cut(s) | 144 |
| Psp6I | CCWGG | 2 cut(s) | 210, 494 |
| PspGI | CCWGG | 2 cut(s) | 210, 494 |
| PspN4I | GGNNCC | 1 cut(s) | 45 |
| PspPI | GGNCC | 3 cut(s) | 442, 492, 563 |
| PstI | CTGCAG | 1 cut(s) | 301 |
| RseI | CAYNNNNRTG | 1 cut(s) | 317 |
| SaqAI | TTAA | 2 cut(s) | 144, 673 |
| SatI | GCNGC | 4 cut(s) | 30, 297, 342, 582 |
| Sau3AI | GATC | 1 cut(s) | 544 |
| Sau96I | GGNCC | 3 cut(s) | 442, 492, 563 |
| SchI | GAGTC | 1 cut(s) | 248 |
| ScrFI | CCNGG | 4 cut(s) | 212, 496, 554, 555 |
| SetI | ASST | 9 cut(s) | 112, 178, 216, 247, 317, 346, 354, 427, 607 |
| SfaNI | GCATC | 1 cut(s) | 16 |
| SfcI | CTRYAG | 2 cut(s) | 297, 540 |
| SfoI | GGCGCC | 1 cut(s) | 45 |
| SinI | GGWCC | 3 cut(s) | 442, 492, 563 |
| SmaI | CCCGGG | 1 cut(s) | 555 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 317 |
| SmlI | CTYRAG | 1 cut(s) | 567 |
| SmoI | CTYRAG | 1 cut(s) | 567 |
| SpeI | ACTAGT | 1 cut(s) | 119 |
| Sse9I | AATT | 5 cut(s) | 141, 249, 306, 363, 591 |
| SspDI | GGCGCC | 1 cut(s) | 43 |
| SspMI | CTAG | 5 cut(s) | 105, 120, 471, 587, 606 |
| StyD4I | CCNGG | 4 cut(s) | 210, 494, 552, 553 |
| StyI | CCWWGG | 1 cut(s) | 382 |
| TaaI | ACNGT | 1 cut(s) | 492 |
| TaiI | ACGT | 1 cut(s) | 317 |
| TaqI | TCGA | 1 cut(s) | 201 |
| TasI | AATT | 5 cut(s) | 141, 249, 306, 363, 591 |
| TfiI | GAWTC | 1 cut(s) | 572 |
| Tru1I | TTAA | 2 cut(s) | 144, 673 |
| Tru9I | TTAA | 2 cut(s) | 144, 673 |
| TseFI | GTSAC | 3 cut(s) | 240, 310, 461 |
| TseI | GCWGC | 4 cut(s) | 29, 296, 341, 581 |
| Tsp45I | GTSAC | 3 cut(s) | 240, 310, 461 |
| TspDTI | ATGAA | 2 cut(s) | 90, 408 |
| TspMI | CCCGGG | 1 cut(s) | 553 |
| VpaK11BI | GGWCC | 3 cut(s) | 442, 492, 563 |
| VspI | ATTAAT | 1 cut(s) | 144 |
| XbaI | TCTAGA | 1 cut(s) | 104 |
| XmaI | CCCGGG | 1 cut(s) | 553 |
| XspI | CTAG | 5 cut(s) | 105, 120, 471, 587, 606 |