ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 356 |
| AccB1I | GGYRCC | 1 cut(s) | 409 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 427 |
| AciI | CCGC | 1 cut(s) | 241 |
| AclWI | GGATC | 2 cut(s) | 333, 695 |
| AcsI | RAATTY | 3 cut(s) | 83, 564, 600 |
| AcuI | CTGAAG | 1 cut(s) | 524 |
| AdeI | CACNNNGTG | 1 cut(s) | 134 |
| AfaI | GTAC | 2 cut(s) | 232, 369 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 200, 240, 427, 657 |
| AflII | CTTAAG | 1 cut(s) | 634 |
| AgsI | TTSAA | 5 cut(s) | 158, 355, 606, 657, 698 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 124, 156, 253, 285, 675, 707 |
| AluBI | AGCT | 6 cut(s) | 19, 31, 254, 358, 377, 689 |
| AluI | AGCT | 6 cut(s) | 19, 31, 254, 358, 377, 689 |
| Alw21I | GWGCWC | 3 cut(s) | 170, 256, 379 |
| Alw26I | GTCTC | 1 cut(s) | 670 |
| AlwI | GGATC | 2 cut(s) | 333, 695 |
| AoxI | GGCC | 3 cut(s) | 62, 202, 648 |
| ApeKI | GCWGC | 1 cut(s) | 16 |
| ApoI | RAATTY | 3 cut(s) | 83, 564, 600 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 690 |
| AspLEI | GCGC | 1 cut(s) | 104 |
| AspS9I | GGNCC | 3 cut(s) | 62, 614, 649 |
| AsuHPI | GGTGA | 1 cut(s) | 92 |
| AsuII | TTCGAA | 1 cut(s) | 569 |
| AvaII | GGWCC | 1 cut(s) | 614 |
| BaeGI | GKGCMC | 1 cut(s) | 414 |
| BanI | GGYRCC | 1 cut(s) | 409 |
| BanII | GRGCYC | 3 cut(s) | 256, 379, 502 |
| Bbv12I | GWGCWC | 3 cut(s) | 170, 256, 379 |
| BbvI | GCAGC | 1 cut(s) | 28 |
| BccI | CCATC | 1 cut(s) | 712 |
| BcoDI | GTCTC | 1 cut(s) | 670 |
| BfaI | CTAG | 2 cut(s) | 32, 312 |
| BfmI | CTRYAG | 1 cut(s) | 404 |
| BfoI | RGCGCY | 1 cut(s) | 105 |
| BfrI | CTTAAG | 1 cut(s) | 634 |
| BfuAI | ACCTGC | 1 cut(s) | 356 |
| BisI | GCNGC | 1 cut(s) | 17 |
| BlsI | GCNGC | 1 cut(s) | 18 |
| BmcAI | AGTACT | 1 cut(s) | 369 |
| Bme18I | GGWCC | 1 cut(s) | 614 |
| BmgT120I | GGNCC | 3 cut(s) | 62, 614, 649 |
| BmiI | GGNNCC | 2 cut(s) | 63, 411 |
| BmsI | GCATC | 1 cut(s) | 574 |
| Bpu10I | CCTNAGC | 1 cut(s) | 515 |
| Bpu14I | TTCGAA | 1 cut(s) | 569 |
| BpuEI | CTTGAG | 1 cut(s) | 286 |
| BsaAI | YACGTR | 1 cut(s) | 553 |
| BsaJI | CCNNGG | 2 cut(s) | 65, 321 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 200, 240, 427, 657 |
| BseDI | CCNNGG | 2 cut(s) | 65, 321 |
| BseGI | GGATG | 2 cut(s) | 589, 628 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 200, 240, 427, 657 |
| BseMII | CTCAG | 3 cut(s) | 18, 485, 508 |
| BseSI | GKGCMC | 1 cut(s) | 414 |
| BseXI | GCAGC | 1 cut(s) | 28 |
| BshFI | GGCC | 3 cut(s) | 64, 204, 650 |
| BshNI | GGYRCC | 1 cut(s) | 409 |
| BsiHKAI | GWGCWC | 3 cut(s) | 170, 256, 379 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 200, 240, 427, 657 |
| BsmAI | GTCTC | 1 cut(s) | 670 |
| BsnI | GGCC | 3 cut(s) | 64, 204, 650 |
| Bsp119I | TTCGAA | 1 cut(s) | 569 |
| Bsp1286I | GDGCHC | 5 cut(s) | 170, 256, 379, 414, 502 |
| Bsp143I | GATC | 3 cut(s) | 325, 424, 700 |
| BspACI | CCGC | 1 cut(s) | 241 |
| BspANI | GGCC | 3 cut(s) | 64, 204, 650 |
| BspCNI | CTCAG | 3 cut(s) | 19, 484, 507 |
| BspHI | TCATGA | 2 cut(s) | 106, 148 |
| BspLI | GGNNCC | 2 cut(s) | 63, 411 |
| BspMI | ACCTGC | 1 cut(s) | 356 |
| BspPI | GGATC | 2 cut(s) | 333, 695 |
| BspT104I | TTCGAA | 1 cut(s) | 569 |
| BspT107I | GGYRCC | 1 cut(s) | 409 |
| BspTI | CTTAAG | 1 cut(s) | 634 |
| BssECI | CCNNGG | 2 cut(s) | 65, 321 |
| BssMI | GATC | 3 cut(s) | 325, 424, 700 |
| BssT1I | CCWWGG | 2 cut(s) | 65, 321 |
| Bst4CI | ACNGT | 1 cut(s) | 456 |
| BstAFI | CTTAAG | 1 cut(s) | 634 |
| BstBAI | YACGTR | 1 cut(s) | 553 |
| BstBI | TTCGAA | 1 cut(s) | 569 |
| BstDEI | CTNAG | 5 cut(s) | 27, 371, 471, 494, 515 |
| BstF5I | GGATG | 2 cut(s) | 589, 628 |
| BstH2I | RGCGCY | 1 cut(s) | 105 |
| BstHHI | GCGC | 1 cut(s) | 104 |
| BstKTI | GATC | 3 cut(s) | 328, 427, 703 |
| BstMAI | GTCTC | 1 cut(s) | 670 |
| BstMBI | GATC | 3 cut(s) | 325, 424, 700 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 409 |
| BstSFI | CTRYAG | 1 cut(s) | 404 |
| BstSLI | GKGCMC | 1 cut(s) | 414 |
| BstV1I | GCAGC | 1 cut(s) | 28 |
| BstX2I | RGATCY | 1 cut(s) | 700 |
| BstYI | RGATCY | 1 cut(s) | 700 |
| BsuRI | GGCC | 3 cut(s) | 64, 204, 650 |
| BtsCI | GGATG | 2 cut(s) | 589, 628 |
| BtsIMutI | CAGTG | 1 cut(s) | 49 |
| BveI | ACCTGC | 1 cut(s) | 356 |
| CciI | TCATGA | 2 cut(s) | 106, 148 |
| CfoI | GCGC | 1 cut(s) | 104 |
| Cfr13I | GGNCC | 3 cut(s) | 62, 614, 649 |
| Csp6I | GTAC | 2 cut(s) | 231, 368 |
| CviAII | CATG | 6 cut(s) | 107, 149, 216, 282, 292, 422 |
| CviQI | GTAC | 2 cut(s) | 231, 368 |
| DdeI | CTNAG | 5 cut(s) | 27, 371, 471, 494, 515 |
| DpnI | GATC | 3 cut(s) | 327, 426, 702 |
| DpnII | GATC | 3 cut(s) | 325, 424, 700 |
| DraIII | CACNNNGTG | 1 cut(s) | 134 |
| Ecl136II | GAGCTC | 2 cut(s) | 254, 377 |
| Eco130I | CCWWGG | 2 cut(s) | 65, 321 |
| Eco147I | AGGCCT | 1 cut(s) | 204 |
| Eco24I | GRGCYC | 3 cut(s) | 256, 379, 502 |
| Eco32I | GATATC | 1 cut(s) | 40 |
| Eco47I | GGWCC | 1 cut(s) | 614 |
| Eco53kI | GAGCTC | 2 cut(s) | 254, 377 |
| Eco57I | CTGAAG | 1 cut(s) | 524 |
| EcoICRI | GAGCTC | 2 cut(s) | 254, 377 |
| EcoO109I | RGGNCCY | 1 cut(s) | 62 |
| EcoRV | GATATC | 1 cut(s) | 40 |
| EcoT14I | CCWWGG | 2 cut(s) | 65, 321 |
| EcoT38I | GRGCYC | 3 cut(s) | 256, 379, 502 |
| ErhI | CCWWGG | 2 cut(s) | 65, 321 |
| FaeI | CATG | 6 cut(s) | 110, 152, 219, 285, 295, 425 |
| FaiI | YATR | 8 cut(s) | 108, 150, 213, 217, 283, 293, 423, 512 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 678, 710 |
| FatI | CATG | 6 cut(s) | 106, 148, 215, 281, 291, 421 |
| Fnu4HI | GCNGC | 1 cut(s) | 17 |
| FokI | GGATG | 2 cut(s) | 596, 635 |
| FriOI | GRGCYC | 3 cut(s) | 256, 379, 502 |
| Fsp4HI | GCNGC | 1 cut(s) | 17 |
| FspBI | CTAG | 2 cut(s) | 32, 312 |
| GlaI | GCGC | 1 cut(s) | 103 |
| GluI | GCNGC | 1 cut(s) | 17 |
| HaeII | RGCGCY | 1 cut(s) | 105 |
| HaeIII | GGCC | 3 cut(s) | 64, 204, 650 |
| HhaI | GCGC | 1 cut(s) | 104 |
| Hin1II | CATG | 6 cut(s) | 110, 152, 219, 285, 295, 425 |
| Hin6I | GCGC | 1 cut(s) | 102 |
| HinP1I | GCGC | 1 cut(s) | 102 |
| HincII | GTYRAC | 1 cut(s) | 345 |
| HindII | GTYRAC | 1 cut(s) | 345 |
| HindIII | AAGCTT | 2 cut(s) | 356, 687 |
| HinfI | GANTC | 2 cut(s) | 577, 630 |
| HphI | GGTGA | 1 cut(s) | 92 |
| Hpy166II | GTNNAC | 2 cut(s) | 345, 550 |
| Hpy188I | TCNGA | 5 cut(s) | 28, 434, 497, 622, 670 |
| Hpy188III | TCNNGA | 5 cut(s) | 107, 149, 581, 698, 708 |
| Hpy8I | GTNNAC | 2 cut(s) | 345, 550 |
| HpyAV | CCTTC | 1 cut(s) | 627 |
| HpyCH4III | ACNGT | 1 cut(s) | 456 |
| HpyCH4IV | ACGT | 1 cut(s) | 552 |
| HpyCH4V | TGCA | 3 cut(s) | 47, 137, 303 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 409 |
| HpyF3I | CTNAG | 5 cut(s) | 27, 371, 471, 494, 515 |
| HpySE526I | ACGT | 1 cut(s) | 552 |
| Hsp92II | CATG | 6 cut(s) | 110, 152, 219, 285, 295, 425 |
| HspAI | GCGC | 1 cut(s) | 102 |
| Kzo9I | GATC | 3 cut(s) | 325, 424, 700 |
| LmnI | GCTCC | 2 cut(s) | 382, 525 |
| Lsp1109I | GCAGC | 1 cut(s) | 28 |
| LweI | GCATC | 1 cut(s) | 574 |
| MaeI | CTAG | 2 cut(s) | 32, 312 |
| MaeII | ACGT | 1 cut(s) | 552 |
| MaeIII | GTNAC | 1 cut(s) | 176 |
| MalI | GATC | 3 cut(s) | 327, 426, 702 |
| MboI | GATC | 3 cut(s) | 325, 424, 700 |
| MboII | GAAGA | 2 cut(s) | 21, 686 |
| MflI | RGATCY | 1 cut(s) | 700 |
| MhlI | GDGCHC | 5 cut(s) | 170, 256, 379, 414, 502 |
| MluCI | AATT | 8 cut(s) | 83, 88, 277, 336, 415, 564, 600, 711 |
| MlyI | GAGTC | 1 cut(s) | 586 |
| MmeI | TCCRAC | 1 cut(s) | 225 |
| MnlI | CCTC | 4 cut(s) | 480, 589, 634, 640 |
| MroXI | GAANNNNTTC | 1 cut(s) | 690 |
| MseI | TTAA | 3 cut(s) | 87, 276, 635 |
| MspCI | CTTAAG | 1 cut(s) | 634 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 409 |
| NdeII | GATC | 3 cut(s) | 325, 424, 700 |
| NlaIII | CATG | 6 cut(s) | 110, 152, 219, 285, 295, 425 |
| NlaIV | GGNNCC | 2 cut(s) | 63, 411 |
| NmuCI | GTSAC | 1 cut(s) | 176 |
| NspV | TTCGAA | 1 cut(s) | 569 |
| PagI | TCATGA | 2 cut(s) | 106, 148 |
| PceI | AGGCCT | 1 cut(s) | 204 |
| PdmI | GAANNNNTTC | 1 cut(s) | 690 |
| PfeI | GAWTC | 1 cut(s) | 630 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 427 |
| PkrI | GCNGC | 1 cut(s) | 18 |
| PleI | GAGTC | 1 cut(s) | 585 |
| PpsI | GAGTC | 1 cut(s) | 585 |
| Ppu21I | YACGTR | 1 cut(s) | 553 |
| Psp124BI | GAGCTC | 2 cut(s) | 256, 379 |
| PspN4I | GGNNCC | 2 cut(s) | 63, 411 |
| PspPI | GGNCC | 3 cut(s) | 62, 614, 649 |
| PsuI | RGATCY | 1 cut(s) | 700 |
| RsaI | GTAC | 2 cut(s) | 232, 369 |
| RsaNI | GTAC | 2 cut(s) | 231, 368 |
| SacI | GAGCTC | 2 cut(s) | 256, 379 |
| SaqAI | TTAA | 3 cut(s) | 87, 276, 635 |
| SatI | GCNGC | 1 cut(s) | 17 |
| Sau3AI | GATC | 3 cut(s) | 325, 424, 700 |
| Sau96I | GGNCC | 3 cut(s) | 62, 614, 649 |
| ScaI | AGTACT | 1 cut(s) | 369 |
| SchI | GAGTC | 1 cut(s) | 586 |
| SduI | GDGCHC | 5 cut(s) | 170, 256, 379, 414, 502 |
| SfaNI | GCATC | 1 cut(s) | 574 |
| SfcI | CTRYAG | 1 cut(s) | 404 |
| SfuI | TTCGAA | 1 cut(s) | 569 |
| SinI | GGWCC | 1 cut(s) | 614 |
| SmlI | CTYRAG | 2 cut(s) | 265, 634 |
| SmoI | CTYRAG | 2 cut(s) | 265, 634 |
| Sse9I | AATT | 8 cut(s) | 83, 88, 277, 336, 415, 564, 600, 711 |
| SseBI | AGGCCT | 1 cut(s) | 204 |
| SsiI | CCGC | 1 cut(s) | 241 |
| SspMI | CTAG | 2 cut(s) | 32, 312 |
| SstI | GAGCTC | 2 cut(s) | 256, 379 |
| StuI | AGGCCT | 1 cut(s) | 204 |
| StyI | CCWWGG | 2 cut(s) | 65, 321 |
| TaaI | ACNGT | 1 cut(s) | 456 |
| TaiI | ACGT | 1 cut(s) | 555 |
| TaqI | TCGA | 1 cut(s) | 569 |
| TasI | AATT | 8 cut(s) | 83, 88, 277, 336, 415, 564, 600, 711 |
| TatI | WGTACW | 1 cut(s) | 367 |
| TfiI | GAWTC | 1 cut(s) | 630 |
| Tru1I | TTAA | 3 cut(s) | 87, 276, 635 |
| Tru9I | TTAA | 3 cut(s) | 87, 276, 635 |
| TscAI | CASTG | 1 cut(s) | 49 |
| TseFI | GTSAC | 1 cut(s) | 176 |
| TseI | GCWGC | 1 cut(s) | 16 |
| Tsp45I | GTSAC | 1 cut(s) | 176 |
| TspDTI | ATGAA | 3 cut(s) | 123, 270, 639 |
| TspRI | CASTG | 1 cut(s) | 49 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 427 |
| Vha464I | CTTAAG | 1 cut(s) | 634 |
| VpaK11BI | GGWCC | 1 cut(s) | 614 |
| XapI | RAATTY | 3 cut(s) | 83, 564, 600 |
| XmnI | GAANNNNTTC | 1 cut(s) | 690 |
| XspI | CTAG | 2 cut(s) | 32, 312 |
| ZrmI | AGTACT | 1 cut(s) | 369 |