Rmu_sc0006730.1_g000010

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006730.1
OG0000044
Physical Location & Seq
Reverse (-)
47903 .. 52139
4237 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006730.1_g000010.1.cds

Sequence Viewer

Length: 2586 bp
atgtctggaaaggatacgatctgttcttggtcgtttctggatgtacagacgccaaaactgcctcgttcgtttgcctcggcggtggagaaacctgtggtttctgtggcgcatctacctgtgcctgaaattcaggatggaaaagtaacagtcacgatctcggaggaaggttatcaatcgggcttagagaagtgcagacatatgcttttggctcgcctccatttagatactaaagaaaaaccctattctctagttgatttgcgcaagaagttgagtatggtttggggtgagattgagacaacagagggggttagggggcgctcacgcaagcgtaagccccgacgtcgtccaacacttaagcaggtttatgtttctaagcaacccaggaaggagacagggaagcaagtattcatagacaatactcccccattggcaaatgatccaggagagggtccttctttctctaaaggtccccaagtggtattggggaatgacactgaaggagtttttggtcctgttgatcatggaatcattgaggaaaatggagtgattattggggctgaccaccaaccgggtcaggtgaacaatgtggtacaacaaattgtggggaggagtgtgcatgacagtgagcaacaacttattattgtacctcaggaagcaaacgaagatgttgcgcaaacaaatggggttgaacaattggaagaagatgggattcacagtggcaacgatgatgctggtggctgtgacaaaaatgtcaatgagggttctactcaagagggtgttcctcagcctcgggttgaagtgaccacaatatccatggaaaattggtacgaggagacagagcgtgcagataatgaggaaagttttattgaagtgttgtttaagagtcaacgtaaatcaatgagaagggcaacgcaaactgcaagcagggaggcttatgtccgtcgttctaaagaagaatttatttggactcataatccggaagtgttatgtatagctgagccctttgtttctctaagttctatccatgctgctttttggcgctccatgggcatggtgcctgtgtgcactaatgatcgttcttcttctttgccgaacttgtggatcttatgtaaatcttcaatggtaccctgggttcgtgtgttatctaggacggatcagcaagtctctatacaagttgtgtttgatactgtaaattgtgttatcacttcagtctatgcccgcaccacggcagctgaacgatgtagattgtggactgatattgctgatgttaagggcaggtttgttactggaccatggttagtttttggtgatttcaatgcagtgttaggggctcatgaaaagaaagggggagcgcctgtttgtcaacgctcatgtgcagaatttcaagctatgtccgacatctgtgaattggttcatgtggacacgaaaggggctgagtttacttgggtacgaagaagaggtgttcaagggaaggttgagcagcggttggatagaagcctagccaacttagcatggttagatgtgtgggataaatatgattgttgtacgttgcctcggcattgctcagatcataatcctctcttaatgtccttctctaaggccacaggggctcgccaaagtctcttccggtttcgtaagatgtggttggagcatagagattttaaaggttttgtcatgaattgctggtcttctatttcttcccatggttgccctctattggtccttcagcataagttaagggtcttgcgtaaagctctccatacatggaattgggaggtttatggtgatatacatcagcgtgtcaattatgatctaaatgccttagaagctcttcaacatgcaatttcttcttcaggtggtactgatgatgactttgcaaaagagaacgaacttcaagccaatttaaatgagtctttaagactacaagagctattctggcgtgagaagtctagggtgcgatggttatcagaaggagatcgtaatacttcttttttccatgctcagtgttgtgcccgcaggatgaggtcttcaatatcttttcttcgagatgataatcaggcacgccagcagggccccctccgccgaccttgcaccaccgaccttccatcaagcggcttccgagctccattcatggcctccgctagccatctcgagtctccgccggaagggctccaccgccacactacttcagcgacaccgccacaactcagcacagctccaccagcagctagccagcccgcccacagcgccggccagtctgccaacatcttccgcccaactctatcagcggcaaaacctccgctccgctgcactgctcacagcatggctcgctggcagcctccgccgaacccttccggcacgtctccgctgcacactcgctgcaaagctccgctgcagatcccttcgaccaactcactgcattactctgggaatcaatcgtcagctcactccgcccaacttcgaagctccgccgaactcttgagtctccgccggactacaccacctggcagcctccgtcgagcttctacgttgagcagcgcctccgttccgccgagctccaggtctgctgcactcacgcttcgctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

861

Amino Acids

96.11

Weight (kDa)

8.75

Isoelectric Point (pI)

56.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000044)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07760 AT5G28823
fragaria_vesca FvH4_1g13572 FvH4_2g03281 FvH4_2g04691 FvH4_2g08332 FvH4_2g08333 FvH4_2g15313 FvH4_2g26101 FvH4_2g29541 FvH4_3g06911 FvH4_3g34351 FvH4_3g43733 FvH4_4g02432 FvH4_4g05601 FvH4_4g08213 FvH4_4g09961 FvH4_4g10131 FvH4_4g20001 FvH4_4g20002 FvH4_5g01051 FvH4_5g01401 FvH4_5g27943 FvH4_6g09220 FvH4_6g17383 FvH4_6g35491 FvH4_6g46421 FvH4_7g04151 FvH4_7g13962 FvH4_7g18611 FvH4_7g19491 FvH4_7g19511 FvH4_7g26562
malus_domestica MD06G1221600.v1.1
pyrus_communis pycom10g21150
rosa_chinensis RchiOBHm_Chr1g0337571 RchiOBHm_Chr2g0168771 RchiOBHm_Chr3g0453631 RchiOBHm_Chr6g0278581
rosa_laevigata RLG00000001899 RLG00000001925 RLG00000002026 RLG00000003410 RLG00000003767 RLG00000004304 RLG00000004473 RLG00000004677 RLG00000006856 RLG00000007994 RLG00000009888 RLG00000011627 RLG00000012174 RLG00000012217 RLG00000013118 RLG00000013736 RLG00000014194 RLG00000014251 RLG00000015011 RLG00000015057 RLG00000015235 RLG00000017416 RLG00000018052 RLG00000018537 RLG00000019968 RLG00000020096 RLG00000020263 RLG00000022606 RLG00000023119 RLG00000028111 RLG00000029686 RLG00000030126 RLG00000031124 RLG00000031236 RLG00000032766 RLG00000033171 RLG00000033548 RLG00000033987 RLG00000034062 RLG00000035115 RLG00000035863
rosa_multiflora Rmu_co8036712.1_g000001 Rmu_co8080248.1_g000001 Rmu_co8208334.1_g000001 Rmu_co8253451.1_g000001 Rmu_co8393241.1_g000001 Rmu_co8522225.1_g000005 Rmu_sc0000060.1_g000030 Rmu_sc0000060.1_g000031 Rmu_sc0000060.1_g000032 Rmu_sc0000090.1_g000008 Rmu_sc0000149.1_g000051 Rmu_sc0000149.1_g000058 Rmu_sc0000309.1_g000050 Rmu_sc0000370.1_g000022 Rmu_sc0000370.1_g000023 Rmu_sc0000370.1_g000024 Rmu_sc0000418.1_g000018 Rmu_sc0000427.1_g000014 Rmu_sc0000427.1_g000015 Rmu_sc0000434.1_g000008 Rmu_sc0000487.1_g000038 Rmu_sc0000487.1_g000039 Rmu_sc0000569.1_g000029 Rmu_sc0000580.1_g000097 Rmu_sc0000595.1_g000068 Rmu_sc0000607.1_g000027 Rmu_sc0000738.1_g000004 Rmu_sc0000758.1_g000001 Rmu_sc0000758.1_g000002 Rmu_sc0000870.1_g000019 Rmu_sc0000924.1_g000040 Rmu_sc0000924.1_g000041 Rmu_sc0000999.1_g000037 Rmu_sc0001001.1_g000001 Rmu_sc0001010.1_g000080 Rmu_sc0001075.1_g000041 Rmu_sc0001097.1_g000016 Rmu_sc0001173.1_g000020 Rmu_sc0001258.1_g000010 Rmu_sc0001425.1_g000031 Rmu_sc0001493.1_g000020 Rmu_sc0001493.1_g000021 Rmu_sc0001644.1_g000024 Rmu_sc0001648.1_g000039 Rmu_sc0001662.1_g000002 Rmu_sc0001849.1_g000046 Rmu_sc0001851.1_g000038 Rmu_sc0001861.1_g000006 Rmu_sc0001899.1_g000008 Rmu_sc0002231.1_g000023 Rmu_sc0002393.1_g000012 Rmu_sc0002515.1_g000010 Rmu_sc0002551.1_g000013 Rmu_sc0002680.1_g000029 Rmu_sc0002700.1_g000030 Rmu_sc0002700.1_g000031 Rmu_sc0002709.1_g000035 Rmu_sc0002779.1_g000017 Rmu_sc0003267.1_g000040 Rmu_sc0003306.1_g000009 Rmu_sc0003338.1_g000014 Rmu_sc0003522.1_g000038 Rmu_sc0003522.1_g000039 Rmu_sc0003653.1_g000031 Rmu_sc0003901.1_g000003 Rmu_sc0003920.1_g000009 Rmu_sc0004014.1_g000009 Rmu_sc0004016.1_g000013 Rmu_sc0004031.1_g000002 Rmu_sc0004106.1_g000001 Rmu_sc0004432.1_g000004 Rmu_sc0004481.1_g000020 Rmu_sc0004874.1_g000005 Rmu_sc0004928.1_g000005 Rmu_sc0005065.1_g000053 Rmu_sc0005091.1_g000005 Rmu_sc0005217.1_g000015 Rmu_sc0005242.1_g000002 Rmu_sc0005300.1_g000011 Rmu_sc0005400.1_g000004 Rmu_sc0005486.1_g000007 Rmu_sc0005527.1_g000015 Rmu_sc0006059.1_g000021 Rmu_sc0006087.1_g000004 Rmu_sc0006184.1_g000006 Rmu_sc0006184.1_g000007 Rmu_sc0006578.1_g000006 Rmu_sc0006730.1_g000010 Rmu_sc0006736.1_g000030 Rmu_sc0006736.1_g000033 Rmu_sc0007333.1_g000018 Rmu_sc0007856.1_g000010 Rmu_sc0008231.1_g000003 Rmu_sc0009862.1_g000012 Rmu_sc0010547.1_g000001 Rmu_sc0010547.1_g000003 Rmu_sc0010632.1_g000012 Rmu_sc0010747.1_g000008 Rmu_sc0011075.1_g000009 Rmu_sc0011565.1_g000004 Rmu_sc0011641.1_g000003 Rmu_sc0013102.1_g000013 Rmu_sc0013160.1_g000006 Rmu_sc0014846.1_g000004 Rmu_sc0017037.1_g000003 Rmu_sc0018203.1_g000001 Rmu_sc0018204.1_g000001 Rmu_sc0018348.1_g000001 Rmu_sc0019354.1_g000002 Rmu_sc0021630.1_g000002 Rmu_sc0022987.1_g000002 Rmu_sc0024469.1_g000005 Rmu_sc0033519.1_g000001 Rmu_sc0033519.1_g000002 Rmu_sc0033519.1_g000003 Rmu_sc0042775.1_g000001 Rmu_ssc0000110.1_g000003 Rmu_ssc0000110.1_g000004 Rmu_ssc0000126.1_g000068 Rmu_ssc0000200.1_g000007 Rmu_ssc0000295.1_g000003 Rmu_ssc0000295.1_g000004 Rmu_ssc0000299.1_g000010 Rmu_ssc0000308.1_g000024 Rmu_ssc0000339.1_g000006 Rmu_ssc0000385.1_g000012 Rmu_ssc0000409.1_g000004 Rmu_ssc0000421.1_g000004
rosa_roxburghii Rroxscaffold_156G00440360 Rroxscaffold_166G00440800 Rroxscaffold_1G00039040 Rroxscaffold_1G00039050 Rroxscaffold_1G00073950 Rroxscaffold_2G00091710 Rroxscaffold_2G00120050 Rroxscaffold_2G00122590 Rroxscaffold_3G00219700 Rroxscaffold_3G00264140 Rroxscaffold_4G00290600 Rroxscaffold_4G00323610 Rroxscaffold_4G00328460 Rroxscaffold_5G00343440 Rroxscaffold_5G00343570 Rroxscaffold_5G00378540 Rroxscaffold_5G00385090 Rroxscaffold_7G00169130 Rroxscaffold_7G00216420
rosa_rugosa Rorug01G0065800 Rorug01G0073500 Rorug01G0091700 Rorug01G0096500 Rorug01G0204700.1 Rorug01G0249100 Rorug01G0333800 Rorug01G0333900 Rorug01G0339500 Rorug01G0431300 Rorug02G0085400 Rorug02G0117500 Rorug02G0130900 Rorug02G0178800 Rorug02G0226700 Rorug02G0336300 Rorug02G0338700 Rorug02G0351400 Rorug02G0459900 Rorug03G0187000 Rorug03G0223700 Rorug03G0291300 Rorug03G0291300 Rorug03G0311100 Rorug03G0316900 Rorug03G0346000 Rorug04G0014500 Rorug04G0014600 Rorug04G0124100 Rorug04G0136500 Rorug04G0302000 Rorug04G0338100 Rorug04G0338200 Rorug04G0413100 Rorug05G0182200 Rorug05G0226500 Rorug05G0273300 Rorug05G0292200 Rorug05G0292200 Rorug05G0392500 Rorug05G0394500 Rorug05G0394600 Rorug05G0505600.1 Rorug06G0351400 Rorug06G0393400 Rorug06G0393600 Rorug06G0470000 Rorug07G0063100 Rorug07G0086800 Rorug07G0109200 Rorug07G0236100
rosa_samantha Rh1AG010800 Rh1AG011100 Rh1AG064900 Rh1AG088000 Rh1AG207100 Rh1AG262000 Rh1AG300800 Rh1BG043000 Rh1BG144600 Rh1BG180700 Rh1BG180800 Rh1BG328800 Rh1BG399400 Rh1CG041400 Rh1CG047300 Rh1CG379700 Rh1DG036500 Rh1DG083000 Rh1DG210700 Rh1DG210800 Rh1DG231100 Rh2AG007900 Rh2AG055500 Rh2AG339100 Rh2AG368100 Rh2BG243300 Rh2BG258900 Rh2BG292000 Rh2BG333500 Rh2BG387300 Rh2BG612800 Rh2BG619100 Rh2CG026500 Rh2CG163600 Rh2CG535700 Rh2DG186400 Rh2DG235000 Rh2DG314500 Rh2DG388500 Rh2DG391400 Rh2DG496900 Rh2DG526700 Rh2DG570700 Rh3AG330700 Rh3BG266900 Rh3CG236000 Rh3CG340400 Rh3DG090000 Rh3DG278400 Rh3DG297600 Rh3DG362600 Rh4AG001300 Rh4AG023300 Rh4AG097100 Rh4AG427000 Rh4BG029400 Rh4BG032400 Rh4BG086000 Rh4BG249200 Rh4CG001900 Rh4CG040600 Rh4CG093000 Rh4CG106300 Rh4CG113200 Rh4CG113900 Rh4DG002300 Rh4DG144400 Rh4DG234200 Rh5AG043700 Rh5AG084900 Rh5AG161500 Rh5AG409000 Rh5AG457200 Rh5AG457900 Rh5AG473700 Rh5AG520600 Rh5BG042100 Rh5BG124100 Rh5BG323500 Rh5BG417200 Rh5BG443700 Rh5BG451500 Rh5BG464900 Rh5BG470400 Rh5BG522500 Rh5CG068800 Rh5CG178300 Rh5CG231000 Rh5CG258600 Rh5CG394500 Rh5CG473700 Rh5DG164700 Rh5DG235400 Rh5DG261300 Rh5DG304900 Rh5DG334500 Rh5DG424300 Rh5DG458400 Rh5DG478600 Rh5DG552300 Rh5DG552700 Rh6AG037000 Rh6AG042100 Rh6AG255500 Rh6AG283400 Rh6AG291800 Rh6BG049600 Rh6BG080700 Rh6BG114600 Rh6BG128900 Rh6BG352500 Rh6CG052400 Rh6CG112900 Rh6CG113000 Rh6CG131300 Rh6CG157700 Rh6CG243200 Rh6CG254100 Rh6CG275700 Rh6CG299700 Rh6CG309100 Rh6CG317600 Rh6CG342600 Rh6CG471900 Rh6DG038200 Rh6DG102300 Rh6DG114400 Rh6DG225900 Rh6DG292900 Rh6DG320700 Rh6DG512800 Rh7AG217700 Rh7AG313900 Rh7AG446000 Rh7AG472600 Rh7BG223100 Rh7BG349900 Rh7BG352000 Rh7CG160200 Rh7CG233900 Rh7CG242700 Rh7CG273900 Rh7CG306400 Rh7CG322200 Rh7DG053800 Rh7DG077800 Rh7DG227700 Rh7DG404800
rosa_wichuraiana Rw0G003990 Rw2G022110 Rw2G024890 Rw6G005700 Rw7G008770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 749
AatII GACGTC 1 cut(s) 343
Acc16I TGCGCA 2 cut(s) 260, 672
Acc36I ACCTGC 2 cut(s) 349, 1266
Acc65I GGTACC 1 cut(s) 1123
AccB1I GGYRCC 2 cut(s) 1054, 1123
AccBSI CCGCTC 1 cut(s) 2302
AccIII TCCGGA 1 cut(s) 976
AclWI GGATC 4 cut(s) 431, 1109, 1161, 2392
AcoI YGGCCR 1 cut(s) 2251
AcsI RAATTY 3 cut(s) 126, 956, 1379
AcuI CTGAAG 5 cut(s) 516, 1191, 1709, 1836, 2172
AcyI GRCGYC 2 cut(s) 50, 340
AfaI GTAC 8 cut(s) 45, 591, 645, 827, 1125, 1449, 1546, 1861
AfiI CCNNNNNNNGG 6 cut(s) 446, 568, 1225, 1717, 2111, 2165
AflII CTTAAG 1 cut(s) 353
AjiI CACGTC 1 cut(s) 2361
AjnI CCWGG 5 cut(s) 380, 439, 1127, 2503, 2558
AjuI GAANNNNNNNTTGG 2 cut(s) 489, 521
Alw21I GWGCWC 3 cut(s) 1067, 2125, 2558
Alw26I GTCTC 8 cut(s) 287, 383, 827, 1168, 1625, 2160, 2367, 2489
Alw44I GTGCAC 1 cut(s) 1063
AlwI GGATC 4 cut(s) 431, 1109, 1161, 2392
Ama87I CYCGRG 2 cut(s) 789, 2150
Aor13HI TCCGGA 1 cut(s) 976
AoxI GGCC 4 cut(s) 1599, 2071, 2133, 2251
ApaI GGGCCC 1 cut(s) 2075
ApaLI GTGCAC 1 cut(s) 1063
ApoI RAATTY 3 cut(s) 126, 956, 1379
Asp700I GAANNNNTTC 2 cut(s) 1410, 1830
Asp718I GGTACC 1 cut(s) 1123
AspLEI GCGC 8 cut(s) 109, 261, 318, 673, 1041, 1354, 2249, 2540
AspS9I GGNCC 7 cut(s) 449, 467, 509, 1289, 1720, 2071, 2072
AsuC2I CCSGG 1 cut(s) 570
AsuHPI GGTGA 4 cut(s) 296, 589, 1319, 1796
AsuII TTCGAA 1 cut(s) 2461
AsuNHI GCTAGC 2 cut(s) 2141, 2228
AvaI CYCGRG 2 cut(s) 789, 2150
AvaII GGWCC 5 cut(s) 449, 467, 509, 1289, 1720
AxyI CCTNAGG 1 cut(s) 648
BaeGI GKGCMC 3 cut(s) 1067, 2014, 2075
BanI GGYRCC 2 cut(s) 1054, 1123
BanII GRGCYC 7 cut(s) 1002, 1333, 1612, 2075, 2125, 2172, 2558
BbsI GAAGAC 2 cut(s) 1680, 2019
Bbv12I GWGCWC 3 cut(s) 1067, 2125, 2558
BbvCI CCTCAGC 1 cut(s) 783
BccI CCATC 5 cut(s) 128, 698, 1953, 2113, 2154
BceAI ACGGC 1 cut(s) 1242
BcgI CGANNNNNNTGC 2 cut(s) 650, 684
BciT130I CCWGG 5 cut(s) 382, 441, 1129, 2505, 2560
BciVI GTATCC 1 cut(s) 7
BclI TGATCA 1 cut(s) 517
BcnI CCSGG 1 cut(s) 570
BcoDI GTCTC 8 cut(s) 287, 383, 827, 1168, 1625, 2160, 2367, 2489
BfaI CTAG 6 cut(s) 248, 1146, 1499, 1950, 2142, 2229
BfmI CTRYAG 1 cut(s) 2393
BfoI RGCGCY 5 cut(s) 319, 1042, 1355, 2250, 2541
BfrI CTTAAG 1 cut(s) 353
BfuAI ACCTGC 2 cut(s) 349, 1266
BfuI GTATCC 1 cut(s) 7
BglI GCCNNNNNGGC 3 cut(s) 1607, 2070, 2167
BlpI GCTNAGC 1 cut(s) 996
Bme1390I CCNGG 6 cut(s) 382, 441, 570, 1129, 2505, 2560
Bme18I GGWCC 5 cut(s) 449, 467, 509, 1289, 1720
BmeT110I CYCGRG 2 cut(s) 789, 2150
BmgBI CACGTC 1 cut(s) 2361
BmgT120I GGNCC 7 cut(s) 449, 467, 509, 1289, 1720, 2071, 2072
BmiI GGNNCC 7 cut(s) 450, 469, 1056, 1125, 2073, 2074, 2171
BmrFI CCNGG 6 cut(s) 382, 441, 570, 1129, 2505, 2560
BmsI GCATC 2 cut(s) 118, 718
BmtI GCTAGC 2 cut(s) 2145, 2232
BpiI GAAGAC 2 cut(s) 1680, 2019
BpmI CTGGAG 1 cut(s) 2542
Bpu10I CCTNAGC 1 cut(s) 783
Bpu1102I GCTNAGC 1 cut(s) 996
Bpu14I TTCGAA 1 cut(s) 2461
BpuEI CTTGAG 2 cut(s) 753, 2500
BpuMI CCSGG 1 cut(s) 570
BsaBI GATNNNNATC 4 cut(s) 1572, 1791, 1963, 2052
BsaHI GRCGYC 2 cut(s) 50, 340
BsaWI WCCGGW 2 cut(s) 976, 1626
BsaXI ACNNNNNCTCC 4 cut(s) 1341, 1371, 2286, 2316
Bsc4I CCNNNNNNNGG 6 cut(s) 446, 568, 1225, 1717, 2111, 2165
Bse118I RCCGGY 1 cut(s) 2249
Bse1I ACTGG 2 cut(s) 1291, 2254
Bse21I CCTNAGG 1 cut(s) 648
Bse3DI GCAATG 1 cut(s) 1558
Bse8I GATNNNNATC 4 cut(s) 1572, 1791, 1963, 2052
BseAI TCCGGA 1 cut(s) 976
BseBI CCWGG 5 cut(s) 382, 441, 1129, 2505, 2560
BseGI GGATG 3 cut(s) 46, 139, 2025
BseJI GATNNNNATC 4 cut(s) 1572, 1791, 1963, 2052
BseLI CCNNNNNNNGG 6 cut(s) 446, 568, 1225, 1717, 2111, 2165
BseMI GCAATG 1 cut(s) 1558
BseMII CTCAG 7 cut(s) 662, 797, 987, 1425, 1578, 2015, 2221
BseNI ACTGG 2 cut(s) 1291, 2254
BseRI GAGGAG 2 cut(s) 622, 845
BseSI GKGCMC 3 cut(s) 1067, 2014, 2075
BsgI GTGCAG 6 cut(s) 211, 864, 1395, 2293, 2354, 2553
BshFI GGCC 4 cut(s) 1601, 2073, 2135, 2253
BshNI GGYRCC 2 cut(s) 1054, 1123
BsiHKAI GWGCWC 3 cut(s) 1067, 2125, 2558
BsiHKCI CYCGRG 2 cut(s) 789, 2150
BsiSI CCGG 7 cut(s) 569, 977, 1627, 2162, 2250, 2355, 2491
BslFI GGGAC 1 cut(s) 453
BslI CCNNNNNNNGG 6 cut(s) 446, 568, 1225, 1717, 2111, 2165
BsmAI GTCTC 8 cut(s) 287, 383, 827, 1168, 1625, 2160, 2367, 2489
BsmBI CGTCTC 1 cut(s) 2367
BsmFI GGGAC 1 cut(s) 453
BsnI GGCC 4 cut(s) 1601, 2073, 2135, 2253
BsoBI CYCGRG 2 cut(s) 789, 2150
Bsp119I TTCGAA 1 cut(s) 2461
Bsp120I GGGCCC 1 cut(s) 2071
Bsp1286I GDGCHC 9 cut(s) 1002, 1067, 1333, 1612, 2014, 2075, 2125, 2172, 2558
Bsp13I TCCGGA 1 cut(s) 976
Bsp1407I TGTACA 1 cut(s) 43
Bsp1720I GCTNAGC 1 cut(s) 996
Bsp19I CCATGG 4 cut(s) 813, 1044, 1292, 1702
BspANI GGCC 4 cut(s) 1601, 2073, 2135, 2253
BspCNI CTCAG 7 cut(s) 661, 796, 988, 1426, 1577, 2014, 2220
BspEI TCCGGA 1 cut(s) 976
BspHI TCATGA 2 cut(s) 1333, 1674
BspLI GGNNCC 7 cut(s) 450, 469, 1056, 1125, 2073, 2074, 2171
BspMAI CTGCAG 1 cut(s) 2397
BspMI ACCTGC 2 cut(s) 349, 1266
BspOI GCTAGC 2 cut(s) 2145, 2232
BspPI GGATC 4 cut(s) 431, 1109, 1161, 2392
BspQI GCTCTTC 1 cut(s) 1836
BspT104I TTCGAA 1 cut(s) 2461
BspT107I GGYRCC 2 cut(s) 1054, 1123
BspTI CTTAAG 1 cut(s) 353
BsrBI CCGCTC 1 cut(s) 2302
BsrDI GCAATG 1 cut(s) 1558
BsrFI RCCGGY 1 cut(s) 2249
BsrGI TGTACA 1 cut(s) 43
BsrI ACTGG 2 cut(s) 1291, 2254
BssAI RCCGGY 1 cut(s) 2249
BssNI GRCGYC 2 cut(s) 50, 340
BssT1I CCWWGG 4 cut(s) 813, 1044, 1292, 1702
Bst2UI CCWGG 5 cut(s) 382, 441, 1129, 2505, 2560
Bst4CI ACNGT 4 cut(s) 148, 623, 716, 1189
Bst6I CTCTTC 3 cut(s) 1450, 1628, 1836
BstACI GRCGYC 2 cut(s) 50, 340
BstAFI CTTAAG 1 cut(s) 353
BstAUI TGTACA 1 cut(s) 43
BstBI TTCGAA 1 cut(s) 2461
BstDSI CCRYGG 5 cut(s) 813, 1044, 1224, 1292, 1702
BstF5I GGATG 3 cut(s) 46, 139, 2025
BstH2I RGCGCY 5 cut(s) 319, 1042, 1355, 2250, 2541
BstHHI GCGC 8 cut(s) 109, 261, 318, 673, 1041, 1354, 2249, 2540
BstMAI GTCTC 8 cut(s) 287, 383, 827, 1168, 1625, 2160, 2367, 2489
BstNI CCWGG 5 cut(s) 382, 441, 1129, 2505, 2560
BstNSI RCATGY 1 cut(s) 1841
BstSCI CCNGG 6 cut(s) 380, 439, 568, 1127, 2503, 2558
BstSFI CTRYAG 1 cut(s) 2393
BstSLI GKGCMC 3 cut(s) 1067, 2014, 2075
BstV2I GAAGAC 2 cut(s) 1680, 2019
BstX2I RGATCY 2 cut(s) 1101, 2397
BstXI CCANNNNNNTGG 1 cut(s) 1051
BstYI RGATCY 2 cut(s) 1101, 2397
Bsu36I CCTNAGG 1 cut(s) 648
BsuI GTATCC 1 cut(s) 7
BsuRI GGCC 4 cut(s) 1601, 2073, 2135, 2253
BtgI CCRYGG 5 cut(s) 813, 1044, 1224, 1292, 1702
BtgZI GCGATG 1 cut(s) 1972
BtrI CACGTC 1 cut(s) 2361
BtsCI GGATG 3 cut(s) 46, 139, 2025
BtsI GCAGTG 3 cut(s) 1326, 2310, 2414
BtsIMutI CAGTG 7 cut(s) 492, 628, 721, 1326, 2009, 2310, 2414
BveI ACCTGC 2 cut(s) 349, 1266
CciI TCATGA 2 cut(s) 1333, 1674
CfoI GCGC 8 cut(s) 109, 261, 318, 673, 1041, 1354, 2249, 2540
Cfr10I RCCGGY 1 cut(s) 2249
Cfr13I GGNCC 7 cut(s) 449, 467, 509, 1289, 1720, 2071, 2072
CseI GACGC 1 cut(s) 58
Csp6I GTAC 8 cut(s) 44, 590, 644, 826, 1124, 1448, 1545, 1860
CviQI GTAC 8 cut(s) 44, 590, 644, 826, 1124, 1448, 1545, 1860
DraI TTTAAA 2 cut(s) 1663, 1905
DrdI GACNNNNNNGTC 1 cut(s) 749
DseDI GACNNNNNNGTC 1 cut(s) 749
EaeI YGGCCR 1 cut(s) 2251
Eam1104I CTCTTC 3 cut(s) 1450, 1628, 1836
EarI CTCTTC 3 cut(s) 1450, 1628, 1836
EciI GGCGGA 8 cut(s) 2069, 2148, 2261, 2331, 2440, 2458, 2477, 2538
Ecl136II GAGCTC 2 cut(s) 2123, 2556
Eco130I CCWWGG 4 cut(s) 813, 1044, 1292, 1702
Eco24I GRGCYC 7 cut(s) 1002, 1333, 1612, 2075, 2125, 2172, 2558
Eco47I GGWCC 5 cut(s) 449, 467, 509, 1289, 1720
Eco53kI GAGCTC 2 cut(s) 2123, 2556
Eco57I CTGAAG 5 cut(s) 516, 1191, 1709, 1836, 2172
Eco81I CCTNAGG 1 cut(s) 648
Eco88I CYCGRG 2 cut(s) 789, 2150
EcoICRI GAGCTC 2 cut(s) 2123, 2556
EcoO109I RGGNCCY 4 cut(s) 449, 467, 2071, 2072
EcoRII CCWGG 5 cut(s) 380, 439, 1127, 2503, 2558
EcoT14I CCWWGG 4 cut(s) 813, 1044, 1292, 1702
EcoT38I GRGCYC 7 cut(s) 1002, 1333, 1612, 2075, 2125, 2172, 2558
ErhI CCWWGG 4 cut(s) 813, 1044, 1292, 1702
Esp3I CGTCTC 1 cut(s) 2367
FaqI GGGAC 1 cut(s) 453
FauI CCCGC 3 cut(s) 1226, 2021, 2245
FauNDI CATATG 1 cut(s) 198
FbaI TGATCA 1 cut(s) 517
FokI GGATG 3 cut(s) 53, 146, 2032
FriOI GRGCYC 7 cut(s) 1002, 1333, 1612, 2075, 2125, 2172, 2558
FspBI CTAG 6 cut(s) 248, 1146, 1499, 1950, 2142, 2229
FspI TGCGCA 2 cut(s) 260, 672
GlaI GCGC 8 cut(s) 108, 260, 317, 672, 1040, 1353, 2248, 2539
GsuI CTGGAG 1 cut(s) 2542
HaeII RGCGCY 5 cut(s) 319, 1042, 1355, 2250, 2541
HaeIII GGCC 4 cut(s) 1601, 2073, 2135, 2253
HapII CCGG 7 cut(s) 569, 977, 1627, 2162, 2250, 2355, 2491
HgaI GACGC 1 cut(s) 58
HhaI GCGC 8 cut(s) 109, 261, 318, 673, 1041, 1354, 2249, 2540
Hin1I GRCGYC 2 cut(s) 50, 340
Hin6I GCGC 8 cut(s) 107, 259, 316, 671, 1039, 1352, 2247, 2538
HinP1I GCGC 8 cut(s) 107, 259, 316, 671, 1039, 1352, 2247, 2538
HincII GTYRAC 2 cut(s) 887, 1364
HindII GTYRAC 2 cut(s) 887, 1364
HinfI GANTC 8 cut(s) 525, 709, 883, 967, 1910, 2153, 2431, 2482
HpaII CCGG 7 cut(s) 569, 977, 1627, 2162, 2250, 2355, 2491
HphI GGTGA 4 cut(s) 296, 589, 1319, 1796
Hpy166II GTNNAC 7 cut(s) 580, 887, 1065, 1251, 1364, 1420, 1440
Hpy188I TCNGA 5 cut(s) 160, 1396, 1567, 1969, 2120
Hpy8I GTNNAC 7 cut(s) 580, 887, 1065, 1251, 1364, 1420, 1440
Hpy99I CGWCG 4 cut(s) 342, 345, 945, 2520
HpyCH4III ACNGT 4 cut(s) 148, 623, 716, 1189
HpyCH4IV ACGT 5 cut(s) 340, 889, 1547, 2360, 2528
HpySE526I ACGT 5 cut(s) 340, 889, 1547, 2360, 2528
Hsp92I GRCGYC 2 cut(s) 50, 340
HspAI GCGC 8 cut(s) 107, 259, 316, 671, 1039, 1352, 2247, 2538
Kpn2I TCCGGA 1 cut(s) 976
KpnI GGTACC 1 cut(s) 1127
KroI GCCGGC 1 cut(s) 2249
KroNI GCCGGC 1 cut(s) 2251
Ksp22I TGATCA 1 cut(s) 517
LguI GCTCTTC 1 cut(s) 1836
LweI GCATC 2 cut(s) 118, 718
MaeI CTAG 6 cut(s) 248, 1146, 1499, 1950, 2142, 2229
MaeII ACGT 5 cut(s) 340, 889, 1547, 2360, 2528
MaeIII GTNAC 5 cut(s) 142, 148, 740, 799, 1282
MbiI CCGCTC 1 cut(s) 2302
MfeI CAATTG 1 cut(s) 692
MflI RGATCY 2 cut(s) 1101, 2397
MhlI GDGCHC 9 cut(s) 1002, 1067, 1333, 1612, 2014, 2075, 2125, 2172, 2558
MlyI GAGTC 5 cut(s) 892, 961, 1919, 2162, 2491
MmeI TCCRAC 4 cut(s) 371, 1419, 1467, 1626
MroI TCCGGA 1 cut(s) 976
MroNI GCCGGC 1 cut(s) 2249
MroXI GAANNNNTTC 2 cut(s) 1410, 1830
MseI TTAA 8 cut(s) 354, 879, 1269, 1583, 1662, 1736, 1904, 1916
MslI CAYNNNNRTG 3 cut(s) 621, 1049, 1797
MspA1I CMGCKG 6 cut(s) 1232, 1483, 2288, 2307, 2368, 2392
MspCI CTTAAG 1 cut(s) 353
MspI CCGG 7 cut(s) 569, 977, 1627, 2162, 2250, 2355, 2491
MspR9I CCNGG 6 cut(s) 382, 441, 570, 1129, 2505, 2560
MunI CAATTG 1 cut(s) 692
MvaI CCWGG 5 cut(s) 382, 441, 1129, 2505, 2560
NaeI GCCGGC 1 cut(s) 2251
NciI CCSGG 1 cut(s) 570
NcoI CCATGG 4 cut(s) 813, 1044, 1292, 1702
NdeI CATATG 1 cut(s) 198
NgoMIV GCCGGC 1 cut(s) 2249
NheI GCTAGC 2 cut(s) 2141, 2228
NlaIV GGNNCC 7 cut(s) 450, 469, 1056, 1125, 2073, 2074, 2171
NmeAIII GCCGAG 3 cut(s) 56, 1534, 2577
NmuCI GTSAC 3 cut(s) 148, 740, 799
NsbI TGCGCA 2 cut(s) 260, 672
NspI RCATGY 1 cut(s) 1841
NspV TTCGAA 1 cut(s) 2461
PaeR7I CTCGAG 1 cut(s) 2150
PagI TCATGA 2 cut(s) 1333, 1674
PasI CCCWGGG 1 cut(s) 1128
PciSI GCTCTTC 1 cut(s) 1836
PdiI GCCGGC 1 cut(s) 2251
PdmI GAANNNNTTC 2 cut(s) 1410, 1830
PfeI GAWTC 3 cut(s) 525, 709, 2431
PflFI GACNNNGTC 1 cut(s) 342
PfoI TCCNGGA 1 cut(s) 439
PleI GAGTC 5 cut(s) 891, 961, 1918, 2161, 2490
PpsI GAGTC 5 cut(s) 891, 961, 1918, 2161, 2490
PpuMI RGGWCCY 2 cut(s) 449, 467
Psp124BI GAGCTC 2 cut(s) 2125, 2558
Psp5II RGGWCCY 2 cut(s) 449, 467
Psp6I CCWGG 5 cut(s) 380, 439, 1127, 2503, 2558
PspGI CCWGG 5 cut(s) 380, 439, 1127, 2503, 2558
PspN4I GGNNCC 7 cut(s) 450, 469, 1056, 1125, 2073, 2074, 2171
PspOMI GGGCCC 1 cut(s) 2071
PspPI GGNCC 7 cut(s) 449, 467, 509, 1289, 1720, 2071, 2072
PspPPI RGGWCCY 2 cut(s) 449, 467
PsrI GAACNNNNNNTAC 2 cut(s) 1116, 1148
PstI CTGCAG 1 cut(s) 2397
PsuI RGATCY 2 cut(s) 1101, 2397
PsyI GACNNNGTC 1 cut(s) 342
PvuII CAGCTG 1 cut(s) 1232
RsaI GTAC 8 cut(s) 45, 591, 645, 827, 1125, 1449, 1546, 1861
RsaNI GTAC 8 cut(s) 44, 590, 644, 826, 1124, 1448, 1545, 1860
RseI CAYNNNNRTG 3 cut(s) 621, 1049, 1797
SacI GAGCTC 2 cut(s) 2125, 2558
SapI GCTCTTC 1 cut(s) 1836
SaqAI TTAA 8 cut(s) 354, 879, 1269, 1583, 1662, 1736, 1904, 1916
Sau96I GGNCC 7 cut(s) 449, 467, 509, 1289, 1720, 2071, 2072
SchI GAGTC 5 cut(s) 892, 961, 1919, 2162, 2491
ScrFI CCNGG 6 cut(s) 382, 441, 570, 1129, 2505, 2560
SduI GDGCHC 9 cut(s) 1002, 1067, 1333, 1612, 2014, 2075, 2125, 2172, 2558
SfaNI GCATC 2 cut(s) 118, 718
SfcI CTRYAG 1 cut(s) 2393
Sfr274I CTCGAG 1 cut(s) 2150
SfuI TTCGAA 1 cut(s) 2461
SinI GGWCC 5 cut(s) 449, 467, 509, 1289, 1720
SlaI CTCGAG 1 cut(s) 2150
SmiI ATTTAAAT 1 cut(s) 1905
SmiMI CAYNNNNRTG 3 cut(s) 621, 1049, 1797
SmlI CTYRAG 4 cut(s) 353, 768, 2150, 2479
SmoI CTYRAG 4 cut(s) 353, 768, 2150, 2479
SspMI CTAG 6 cut(s) 248, 1146, 1499, 1950, 2142, 2229
SstI GAGCTC 2 cut(s) 2125, 2558
StyD4I CCNGG 6 cut(s) 380, 439, 568, 1127, 2503, 2558
StyI CCWWGG 4 cut(s) 813, 1044, 1292, 1702
SwaI ATTTAAAT 1 cut(s) 1905
TaaI ACNGT 4 cut(s) 148, 623, 716, 1189
TaiI ACGT 5 cut(s) 343, 892, 1550, 2363, 2531
TaqI TCGA 5 cut(s) 2044, 2151, 2405, 2461, 2518
TatI WGTACW 1 cut(s) 43
TauI GCSGC 2 cut(s) 2115, 2291
TfiI GAWTC 3 cut(s) 525, 709, 2431
Tru1I TTAA 8 cut(s) 354, 879, 1269, 1583, 1662, 1736, 1904, 1916
Tru9I TTAA 8 cut(s) 354, 879, 1269, 1583, 1662, 1736, 1904, 1916
TscAI CASTG 7 cut(s) 499, 628, 721, 1326, 2009, 2317, 2421
TseFI GTSAC 3 cut(s) 148, 740, 799
Tsp45I GTSAC 3 cut(s) 148, 740, 799
TspDTI ATGAA 5 cut(s) 397, 1350, 1403, 1691, 2119
TspGWI ACGGA 4 cut(s) 929, 1166, 2504, 2533
TspRI CASTG 7 cut(s) 499, 628, 721, 1326, 2009, 2317, 2421
Tth111I GACNNNGTC 1 cut(s) 342
Vha464I CTTAAG 1 cut(s) 353
VneI GTGCAC 1 cut(s) 1063
VpaK11BI GGWCC 5 cut(s) 449, 467, 509, 1289, 1720
XapI RAATTY 3 cut(s) 126, 956, 1379
XceI RCATGY 1 cut(s) 1841
XcmI CCANNNNNNNNNTGG 1 cut(s) 811
XhoI CTCGAG 1 cut(s) 2150
XmnI GAANNNNTTC 2 cut(s) 1410, 1830
XspI CTAG 6 cut(s) 248, 1146, 1499, 1950, 2142, 2229
ZraI GACGTC 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.