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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 160 |
| Acc16I | TGCGCA | 1 cut(s) | 414 |
| Acc36I | ACCTGC | 3 cut(s) | 135, 172, 518 |
| AccI | GTMKAC | 2 cut(s) | 5, 154 |
| AciI | CCGC | 1 cut(s) | 356 |
| AclWI | GGATC | 2 cut(s) | 200, 213 |
| AcsI | RAATTY | 2 cut(s) | 10, 197 |
| AcyI | GRCGYC | 1 cut(s) | 157 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 140, 383 |
| AgsI | TTSAA | 1 cut(s) | 22 |
| AhlI | ACTAGT | 1 cut(s) | 62 |
| AluBI | AGCT | 1 cut(s) | 428 |
| AluI | AGCT | 1 cut(s) | 428 |
| Alw21I | GWGCWC | 1 cut(s) | 169 |
| Alw26I | GTCTC | 2 cut(s) | 104, 153 |
| AlwI | GGATC | 2 cut(s) | 200, 213 |
| AoxI | GGCC | 1 cut(s) | 314 |
| ApoI | RAATTY | 2 cut(s) | 10, 197 |
| AspLEI | GCGC | 1 cut(s) | 415 |
| AspS9I | GGNCC | 1 cut(s) | 275 |
| AsuHPI | GGTGA | 1 cut(s) | 473 |
| AvaII | GGWCC | 1 cut(s) | 275 |
| BamHI | GGATCC | 1 cut(s) | 205 |
| Bbv12I | GWGCWC | 1 cut(s) | 169 |
| BccI | CCATC | 2 cut(s) | 416, 436 |
| BcoDI | GTCTC | 2 cut(s) | 104, 153 |
| BcuI | ACTAGT | 1 cut(s) | 62 |
| BfaI | CTAG | 1 cut(s) | 63 |
| BfuAI | ACCTGC | 3 cut(s) | 135, 172, 518 |
| Bme18I | GGWCC | 1 cut(s) | 275 |
| BmgT120I | GGNCC | 1 cut(s) | 275 |
| BmiI | GGNNCC | 3 cut(s) | 207, 276, 360 |
| BmsI | GCATC | 2 cut(s) | 424, 424 |
| BpmI | CTGGAG | 1 cut(s) | 102 |
| Bpu10I | CCTNAGC | 1 cut(s) | 429 |
| BsaHI | GRCGYC | 1 cut(s) | 157 |
| BsaI | GGTCTC | 1 cut(s) | 153 |
| BsaWI | WCCGGW | 1 cut(s) | 376 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 140, 383 |
| Bse1I | ACTGG | 1 cut(s) | 119 |
| BseGI | GGATG | 2 cut(s) | 439, 447 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 140, 383 |
| BseNI | ACTGG | 1 cut(s) | 119 |
| BseRI | GAGGAG | 1 cut(s) | 291 |
| BsgI | GTGCAG | 2 cut(s) | 401, 495 |
| BshFI | GGCC | 1 cut(s) | 316 |
| BsiHKAI | GWGCWC | 1 cut(s) | 169 |
| BsiSI | CCGG | 1 cut(s) | 377 |
| BslFI | GGGAC | 2 cut(s) | 25, 487 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 140, 383 |
| BsmAI | GTCTC | 2 cut(s) | 104, 153 |
| BsmFI | GGGAC | 2 cut(s) | 25, 487 |
| BsnI | GGCC | 1 cut(s) | 316 |
| Bso31I | GGTCTC | 1 cut(s) | 153 |
| Bsp1286I | GDGCHC | 1 cut(s) | 169 |
| Bsp143I | GATC | 1 cut(s) | 205 |
| BspACI | CCGC | 1 cut(s) | 356 |
| BspANI | GGCC | 1 cut(s) | 316 |
| BspLI | GGNNCC | 3 cut(s) | 207, 276, 360 |
| BspMI | ACCTGC | 3 cut(s) | 135, 172, 518 |
| BspPI | GGATC | 2 cut(s) | 200, 213 |
| BspTNI | GGTCTC | 1 cut(s) | 153 |
| BsrI | ACTGG | 1 cut(s) | 119 |
| BssMI | GATC | 1 cut(s) | 205 |
| BssNI | GRCGYC | 1 cut(s) | 157 |
| BstACI | GRCGYC | 1 cut(s) | 157 |
| BstC8I | GCNNGC | 3 cut(s) | 289, 354, 514 |
| BstDEI | CTNAG | 2 cut(s) | 255, 429 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 138 |
| BstF5I | GGATG | 2 cut(s) | 439, 447 |
| BstHHI | GCGC | 1 cut(s) | 415 |
| BstKTI | GATC | 1 cut(s) | 208 |
| BstMAI | GTCTC | 2 cut(s) | 104, 153 |
| BstMBI | GATC | 1 cut(s) | 205 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 358, 434 |
| BstX2I | RGATCY | 1 cut(s) | 205 |
| BstYI | RGATCY | 1 cut(s) | 205 |
| BsuRI | GGCC | 1 cut(s) | 316 |
| BtsCI | GGATG | 2 cut(s) | 439, 447 |
| BveI | ACCTGC | 3 cut(s) | 135, 172, 518 |
| Cac8I | GCNNGC | 3 cut(s) | 289, 354, 514 |
| CfoI | GCGC | 1 cut(s) | 415 |
| Cfr13I | GGNCC | 1 cut(s) | 275 |
| CviAII | CATG | 3 cut(s) | 438, 458, 479 |
| CviJI | RGCY | 5 cut(s) | 133, 316, 361, 395, 428 |
| CviKI_1 | RGCY | 5 cut(s) | 133, 316, 361, 395, 428 |
| DdeI | CTNAG | 2 cut(s) | 255, 429 |
| DpnI | GATC | 1 cut(s) | 207 |
| DpnII | GATC | 1 cut(s) | 205 |
| Eco31I | GGTCTC | 1 cut(s) | 153 |
| Eco47I | GGWCC | 1 cut(s) | 275 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 138 |
| EcoO109I | RGGNCCY | 1 cut(s) | 275 |
| EcoT22I | ATGCAT | 1 cut(s) | 439 |
| FaeI | CATG | 3 cut(s) | 441, 461, 482 |
| FaiI | YATR | 6 cut(s) | 27, 60, 94, 439, 459, 480 |
| FaqI | GGGAC | 2 cut(s) | 25, 487 |
| FatI | CATG | 3 cut(s) | 437, 457, 478 |
| FblI | GTMKAC | 2 cut(s) | 5, 154 |
| FokI | GGATG | 2 cut(s) | 446, 454 |
| FspBI | CTAG | 1 cut(s) | 63 |
| FspI | TGCGCA | 1 cut(s) | 414 |
| GlaI | GCGC | 1 cut(s) | 414 |
| GsuI | CTGGAG | 1 cut(s) | 102 |
| HaeIII | GGCC | 1 cut(s) | 316 |
| HapII | CCGG | 1 cut(s) | 377 |
| HhaI | GCGC | 1 cut(s) | 415 |
| Hin1I | GRCGYC | 1 cut(s) | 157 |
| Hin1II | CATG | 3 cut(s) | 441, 461, 482 |
| Hin6I | GCGC | 1 cut(s) | 413 |
| HinP1I | GCGC | 1 cut(s) | 413 |
| HincII | GTYRAC | 3 cut(s) | 6, 155, 238 |
| HindII | GTYRAC | 3 cut(s) | 6, 155, 238 |
| HinfI | GANTC | 2 cut(s) | 239, 404 |
| HpaII | CCGG | 1 cut(s) | 377 |
| HphI | GGTGA | 1 cut(s) | 473 |
| Hpy166II | GTNNAC | 3 cut(s) | 6, 155, 238 |
| Hpy188III | TCNNGA | 2 cut(s) | 401, 419 |
| Hpy8I | GTNNAC | 3 cut(s) | 6, 155, 238 |
| Hpy99I | CGWCG | 5 cut(s) | 10, 156, 159, 162, 165 |
| HpyAV | CCTTC | 1 cut(s) | 288 |
| HpyCH4IV | ACGT | 1 cut(s) | 157 |
| HpyCH4V | TGCA | 5 cut(s) | 287, 382, 437, 457, 512 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 358, 434 |
| HpyF3I | CTNAG | 2 cut(s) | 255, 429 |
| HpySE526I | ACGT | 1 cut(s) | 157 |
| Hsp92I | GRCGYC | 1 cut(s) | 157 |
| Hsp92II | CATG | 3 cut(s) | 441, 461, 482 |
| HspAI | GCGC | 1 cut(s) | 413 |
| Kzo9I | GATC | 1 cut(s) | 205 |
| LmnI | GCTCC | 3 cut(s) | 121, 358, 425 |
| LweI | GCATC | 2 cut(s) | 424, 424 |
| MaeI | CTAG | 1 cut(s) | 63 |
| MaeII | ACGT | 1 cut(s) | 157 |
| MaeIII | GTNAC | 2 cut(s) | 71, 530 |
| MalI | GATC | 1 cut(s) | 207 |
| MboI | GATC | 1 cut(s) | 205 |
| MboII | GAAGA | 1 cut(s) | 43 |
| MflI | RGATCY | 1 cut(s) | 205 |
| MhlI | GDGCHC | 1 cut(s) | 169 |
| MluCI | AATT | 3 cut(s) | 10, 102, 197 |
| MlyI | GAGTC | 1 cut(s) | 233 |
| MmeI | TCCRAC | 1 cut(s) | 361 |
| MnlI | CCTC | 8 cut(s) | 118, 134, 259, 265, 309, 312, 441, 483 |
| Mph1103I | ATGCAT | 1 cut(s) | 439 |
| MseI | TTAA | 2 cut(s) | 201, 369 |
| MslI | CAYNNNNRTG | 3 cut(s) | 63, 420, 462 |
| MspI | CCGG | 1 cut(s) | 377 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 358, 434 |
| NdeII | GATC | 1 cut(s) | 205 |
| NlaIII | CATG | 3 cut(s) | 441, 461, 482 |
| NlaIV | GGNNCC | 3 cut(s) | 207, 276, 360 |
| NsbI | TGCGCA | 1 cut(s) | 414 |
| NsiI | ATGCAT | 1 cut(s) | 439 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 157, 160, 166 |
| PfeI | GAWTC | 1 cut(s) | 404 |
| PflFI | GACNNNGTC | 1 cut(s) | 159 |
| PleI | GAGTC | 1 cut(s) | 233 |
| PpsI | GAGTC | 1 cut(s) | 233 |
| PpuMI | RGGWCCY | 1 cut(s) | 275 |
| Psp5II | RGGWCCY | 1 cut(s) | 275 |
| PspN4I | GGNNCC | 3 cut(s) | 207, 276, 360 |
| PspPI | GGNCC | 1 cut(s) | 275 |
| PspPPI | RGGWCCY | 1 cut(s) | 275 |
| PsuI | RGATCY | 1 cut(s) | 205 |
| PsyI | GACNNNGTC | 1 cut(s) | 159 |
| RseI | CAYNNNNRTG | 3 cut(s) | 63, 420, 462 |
| SalI | GTCGAC | 2 cut(s) | 4, 153 |
| SaqAI | TTAA | 2 cut(s) | 201, 369 |
| Sau3AI | GATC | 1 cut(s) | 205 |
| Sau96I | GGNCC | 1 cut(s) | 275 |
| SchI | GAGTC | 1 cut(s) | 233 |
| SduI | GDGCHC | 1 cut(s) | 169 |
| SetI | ASST | 9 cut(s) | 93, 129, 149, 160, 186, 343, 430, 532, 544 |
| SfaNI | GCATC | 2 cut(s) | 424, 424 |
| SgrDI | CGTCGACG | 1 cut(s) | 153 |
| SinI | GGWCC | 1 cut(s) | 275 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 63, 420, 462 |
| SpeI | ACTAGT | 1 cut(s) | 62 |
| Sse9I | AATT | 3 cut(s) | 10, 102, 197 |
| SsiI | CCGC | 1 cut(s) | 356 |
| SspMI | CTAG | 1 cut(s) | 63 |
| TaiI | ACGT | 1 cut(s) | 160 |
| TaqI | TCGA | 2 cut(s) | 5, 154 |
| TasI | AATT | 3 cut(s) | 10, 102, 197 |
| TfiI | GAWTC | 1 cut(s) | 404 |
| Tru1I | TTAA | 2 cut(s) | 201, 369 |
| Tru9I | TTAA | 2 cut(s) | 201, 369 |
| TspDTI | ATGAA | 3 cut(s) | 47, 178, 317 |
| TspGWI | ACGGA | 1 cut(s) | 92 |
| Tth111I | GACNNNGTC | 1 cut(s) | 159 |
| VpaK11BI | GGWCC | 1 cut(s) | 275 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 138 |
| XapI | RAATTY | 2 cut(s) | 10, 197 |
| XmiI | GTMKAC | 2 cut(s) | 5, 154 |
| XspI | CTAG | 1 cut(s) | 63 |
| ZraI | GACGTC | 1 cut(s) | 158 |
| Zsp2I | ATGCAT | 1 cut(s) | 439 |