AT2G28060

SNF1-related protein kinase regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0008047
Physical Location & Seq
Reverse (-)
11949871 .. 11952253
2383 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G28060.2

Sequence Viewer

Length: 345 bp
ATGAACAGTCAAAATCCTGATGATCATGAGGACACAACGGTTGTGGGATTTGAAGTACCTGTATCACCGGTTTCAAGTTACAACAATGTGTATTCCTCAACCGAAGATGAGACAAGAGATCCTCCAGCAGTACCGCCACACCTTCAACACTCTCTATTAGGCAATCAGGGTAGCATGGAACTGGCTTATGCGCCACAGAATGTTGTCCTGAACCACCTCTATATCGAGAACCGAGACGCCCCAAGATCTGTTGTAGCACTCGGTTTCTCGCATCGGTTCAGGACTAAGTTTGTCACTGTGGTGATATACAAGCCTGTCCAAAGAAGAGGGAGCGCCAATGTTTGA

Protein Analysis

114

Amino Acids

12.7

Weight (kDa)

5.89

Isoelectric Point (pI)

52.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMPKBI PF04739 38 - 105 2e-21 5'-AMP-activated protein kinase beta subunit, interaction domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 134
AclWI GGATC 1 cut(s) 113
AcyI GRCGYC 1 cut(s) 237
AfaI GTAC 2 cut(s) 57, 132
AgeI ACCGGT 1 cut(s) 67
AgsI TTSAA 3 cut(s) 53, 75, 146
AleI CACNNNNGTG 1 cut(s) 299
Alw26I GTCTC 2 cut(s) 104, 228
AlwI GGATC 1 cut(s) 113
AsiGI ACCGGT 1 cut(s) 67
AspLEI GCGC 2 cut(s) 193, 335
AsuHPI GGTGA 2 cut(s) 57, 313
BclI TGATCA 1 cut(s) 22
BcoDI GTCTC 2 cut(s) 104, 228
BfoI RGCGCY 1 cut(s) 336
BglII AGATCT 1 cut(s) 245
BmsI GCATC 1 cut(s) 280
BpmI CTGGAG 1 cut(s) 108
BsaHI GRCGYC 1 cut(s) 237
BsaWI WCCGGW 1 cut(s) 67
Bse118I RCCGGY 1 cut(s) 67
Bse1I ACTGG 1 cut(s) 186
BseNI ACTGG 1 cut(s) 186
BshTI ACCGGT 1 cut(s) 67
BsiSI CCGG 1 cut(s) 68
BsmAI GTCTC 2 cut(s) 104, 228
BsmBI CGTCTC 1 cut(s) 228
Bsp143I GATC 3 cut(s) 22, 118, 245
BspACI CCGC 1 cut(s) 134
BspHI TCATGA 1 cut(s) 25
BspPI GGATC 1 cut(s) 113
BsrFI RCCGGY 1 cut(s) 67
BsrI ACTGG 1 cut(s) 186
BssAI RCCGGY 1 cut(s) 67
BssMI GATC 3 cut(s) 22, 118, 245
BssNI GRCGYC 1 cut(s) 237
Bst4CI ACNGT 3 cut(s) 8, 40, 298
Bst6I CTCTTC 1 cut(s) 319
BstACI GRCGYC 1 cut(s) 237
BstDEI CTNAG 1 cut(s) 285
BstH2I RGCGCY 1 cut(s) 336
BstHHI GCGC 2 cut(s) 193, 335
BstKTI GATC 3 cut(s) 25, 121, 248
BstMAI GTCTC 2 cut(s) 104, 228
BstMBI GATC 3 cut(s) 22, 118, 245
BstX2I RGATCY 2 cut(s) 118, 245
BstYI RGATCY 2 cut(s) 118, 245
BtsIMutI CAGTG 1 cut(s) 294
CciI TCATGA 1 cut(s) 25
CfoI GCGC 2 cut(s) 193, 335
Cfr10I RCCGGY 1 cut(s) 67
CseI GACGC 1 cut(s) 245
Csp6I GTAC 2 cut(s) 56, 131
CspAI ACCGGT 1 cut(s) 67
CspCI CAANNNNNGTGG 2 cut(s) 24, 59
CviAII CATG 2 cut(s) 26, 175
CviJI RGCY 2 cut(s) 185, 313
CviKI_1 RGCY 2 cut(s) 185, 313
CviQI GTAC 2 cut(s) 56, 131
DdeI CTNAG 1 cut(s) 285
DpnI GATC 3 cut(s) 24, 120, 247
DpnII GATC 3 cut(s) 22, 118, 245
Eam1104I CTCTTC 1 cut(s) 319
EarI CTCTTC 1 cut(s) 319
Esp3I CGTCTC 1 cut(s) 228
FaeI CATG 2 cut(s) 29, 178
FaiI YATR 5 cut(s) 27, 176, 189, 222, 307
FatI CATG 2 cut(s) 25, 174
FbaI TGATCA 1 cut(s) 22
GlaI GCGC 2 cut(s) 192, 334
GsuI CTGGAG 1 cut(s) 108
HaeII RGCGCY 1 cut(s) 336
HapII CCGG 1 cut(s) 68
HgaI GACGC 1 cut(s) 245
HhaI GCGC 2 cut(s) 193, 335
Hin1I GRCGYC 1 cut(s) 237
Hin1II CATG 2 cut(s) 29, 178
Hin6I GCGC 2 cut(s) 191, 333
HinP1I GCGC 2 cut(s) 191, 333
HpaII CCGG 1 cut(s) 68
HphI GGTGA 2 cut(s) 57, 313
Hpy188III TCNNGA 5 cut(s) 17, 26, 208, 226, 280
HpyAV CCTTC 1 cut(s) 152
HpyCH4III ACNGT 3 cut(s) 8, 40, 298
HpyF3I CTNAG 1 cut(s) 285
Hsp92I GRCGYC 1 cut(s) 237
Hsp92II CATG 2 cut(s) 29, 178
HspAI GCGC 2 cut(s) 191, 333
Ksp22I TGATCA 1 cut(s) 22
Kzo9I GATC 3 cut(s) 22, 118, 245
LmnI GCTCC 1 cut(s) 330
LpnPI CCDG 9 cut(s) 30, 72, 81, 138, 152, 167, 221, 265, 327
LweI GCATC 1 cut(s) 280
MaeIII GTNAC 2 cut(s) 77, 292
MalI GATC 3 cut(s) 24, 120, 247
MboI GATC 3 cut(s) 22, 118, 245
MboII GAAGA 2 cut(s) 116, 336
MflI RGATCY 2 cut(s) 118, 245
MnlI CCTC 5 cut(s) 22, 106, 132, 227, 320
MslI CAYNNNNRTG 1 cut(s) 299
MspI CCGG 1 cut(s) 68
NdeII GATC 3 cut(s) 22, 118, 245
NlaIII CATG 2 cut(s) 29, 178
NmuCI GTSAC 1 cut(s) 292
OliI CACNNNNGTG 1 cut(s) 299
PagI TCATGA 1 cut(s) 25
PinAI ACCGGT 1 cut(s) 67
PsuI RGATCY 2 cut(s) 118, 245
RsaI GTAC 2 cut(s) 57, 132
RsaNI GTAC 2 cut(s) 56, 131
RseI CAYNNNNRTG 1 cut(s) 299
Sau3AI GATC 3 cut(s) 22, 118, 245
SetI ASST 3 cut(s) 61, 144, 219
SfaNI GCATC 1 cut(s) 280
SmiMI CAYNNNNRTG 1 cut(s) 299
SsiI CCGC 1 cut(s) 134
TaaI ACNGT 3 cut(s) 8, 40, 298
TaqI TCGA 1 cut(s) 225
TscAI CASTG 1 cut(s) 301
TseFI GTSAC 1 cut(s) 292
Tsp45I GTSAC 1 cut(s) 292
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.