Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0008047

Physical Location & Seq

Genomic Coordinates Forward (+)

7637026 .. 7642649

Gene Structure 5624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G107300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGAACAACTCATTTGGTGATGATTATGATGAAGCAACTGTTGCAGGATTTGAAGTTTTAAGATCACCTGATGCAAGTTACGACAATGTATACCCTGGGAATGAAGATGAGGCACGGGATCCGCCTCTTGTCCCTCCACATCTGCAACAGACCTTACTTAGTTATCCAGCAAGCGCAGACACTGCTGGAACTCTTCCGTTGCCACAGAATGTGACCCTCAATCATCTTTACATTGAGAACCGGGAGAGCCCACGATCTGTAGTTGCACTTGGGTTCACTCATCGCTTTCGTTCAAAATTTGTTACAGTTGTGCTTTACAAACCAGTTCAAAGAAGGGGGACTACCAGCACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0003674 GO:0008150 GO:0019207 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031399 GO:0032268 GO:0042325 GO:0043549 GO:0045859 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051338 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko04068 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 map04068 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410

Pfam Domains

Protein Families

AMPKBI

Protein Analysis

118

Amino Acids

13.01

Weight (kDa)

5.2

Isoelectric Point (pI)

57.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28060 AT2G28060 AT2G28060 AT2G28060
fragaria_vesca	FvH4_3g31260
malus_domestica	MD03G1124800.v1.1 MD11G1141500.v1.1
prunus_persica	Prupe.6G107300_v2.0.a1 Prupe.6G107300_v2.0.a1 Prupe.6G107300_v2.0.a1
pyrus_communis	pycom11g11760
rosa_chinensis	RchiOBHm_Chr5g0057871
rosa_laevigata	RLG00000035189
rosa_multiflora	Rmu_sc0005588.1_g000007 Rmu_sc0016426.1_g000003
rosa_roxburghii	Rroxscaffold_1G00022570
rosa_rugosa	Rorug05G0310300 Rorug05G0310300 Rorug05G0310400
rosa_samantha	Rh5AG379000 Rh5BG390100 Rh5CG413900 Rh5DG404600
rosa_wichuraiana	Rw5G035700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	90
AciI	CCGC	1 cut(s)	122
AclWI	GGATC	2 cut(s)	113, 126
AcsI	RAATTY	1 cut(s)	296
AgsI	TTSAA	3 cut(s)	53, 294, 329
AjnI	CCWGG	1 cut(s)	94
AlwI	GGATC	2 cut(s)	113, 126
AlwNI	CAGNNNCTG	1 cut(s)	182
ApoI	RAATTY	1 cut(s)	296
AspLEI	GCGC	1 cut(s)	176
AsuC2I	CCSGG	1 cut(s)	242
AsuHPI	GGTGA	2 cut(s)	29, 57
BamHI	GGATCC	1 cut(s)	118
BanII	GRGCYC	1 cut(s)	251
BarI	GAAGNNNNNNTAC	1 cut(s)	325
BciT130I	CCWGG	1 cut(s)	96
BcnI	CCSGG	1 cut(s)	242
BfmI	CTRYAG	1 cut(s)	258
Bme1390I	CCNGG	2 cut(s)	96, 242
BmiI	GGNNCC	1 cut(s)	120
BmrFI	CCNGG	2 cut(s)	96, 242
BmsI	GCATC	1 cut(s)	61
BpuMI	CCSGG	1 cut(s)	242
BsaJI	CCNNGG	2 cut(s)	94, 95
Bse1I	ACTGG	1 cut(s)	323
BseBI	CCWGG	1 cut(s)	96
BseDI	CCNNGG	2 cut(s)	94, 95
BseNI	ACTGG	1 cut(s)	323
BsiSI	CCGG	1 cut(s)	241
BslFI	GGGAC	1 cut(s)	116
BsmFI	GGGAC	1 cut(s)	116
Bsp1286I	GDGCHC	1 cut(s)	251
Bsp143I	GATC	3 cut(s)	62, 118, 254
BspACI	CCGC	1 cut(s)	122
BspLI	GGNNCC	1 cut(s)	120
BspPI	GGATC	2 cut(s)	113, 126
BsrI	ACTGG	1 cut(s)	323
BssECI	CCNNGG	2 cut(s)	94, 95
BssMI	GATC	3 cut(s)	62, 118, 254
BssNAI	GTATAC	1 cut(s)	91
Bst1107I	GTATAC	1 cut(s)	91
Bst2UI	CCWGG	1 cut(s)	96
Bst4CI	ACNGT	2 cut(s)	40, 307
Bst6I	CTCTTC	1 cut(s)	198
BstAPI	GCANNNNNTGC	2 cut(s)	41, 182
BstC8I	GCNNGC	1 cut(s)	172
BstDEI	CTNAG	2 cut(s)	158, 351
BstHHI	GCGC	1 cut(s)	176
BstKTI	GATC	3 cut(s)	65, 121, 257
BstMBI	GATC	3 cut(s)	62, 118, 254
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 182
BstNI	CCWGG	1 cut(s)	96
BstSCI	CCNGG	2 cut(s)	94, 240
BstSFI	CTRYAG	1 cut(s)	258
BstX2I	RGATCY	1 cut(s)	118
BstYI	RGATCY	1 cut(s)	118
BstZ17I	GTATAC	1 cut(s)	91
BtgZI	GCGATG	1 cut(s)	266
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	180
Cac8I	GCNNGC	1 cut(s)	172
CaiI	CAGNNNCTG	1 cut(s)	182
CfoI	GCGC	1 cut(s)	176
CviJI	RGCY	1 cut(s)	249
CviKI_1	RGCY	1 cut(s)	249
DdeI	CTNAG	2 cut(s)	158, 351
DpnI	GATC	3 cut(s)	64, 120, 256
DpnII	GATC	3 cut(s)	62, 118, 254
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
EciI	GGCGGA	1 cut(s)	111
Eco24I	GRGCYC	1 cut(s)	251
EcoRII	CCWGG	1 cut(s)	94
EcoT38I	GRGCYC	1 cut(s)	251
FaiI	YATR	2 cut(s)	27, 91
FaqI	GGGAC	1 cut(s)	116
FblI	GTMKAC	1 cut(s)	90
FriOI	GRGCYC	1 cut(s)	251
GlaI	GCGC	1 cut(s)	175
HapII	CCGG	1 cut(s)	241
HhaI	GCGC	1 cut(s)	176
Hin6I	GCGC	1 cut(s)	174
HinP1I	GCGC	1 cut(s)	174
HpaII	CCGG	1 cut(s)	241
HphI	GGTGA	2 cut(s)	29, 57
Hpy166II	GTNNAC	2 cut(s)	91, 276
Hpy8I	GTNNAC	2 cut(s)	91, 276
HpyAV	CCTTC	1 cut(s)	327
HpyCH4III	ACNGT	2 cut(s)	40, 307
HpyCH4V	TGCA	4 cut(s)	44, 74, 145, 266
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 182
HpyF3I	CTNAG	2 cut(s)	158, 351
HspAI	GCGC	1 cut(s)	174
Kzo9I	GATC	3 cut(s)	62, 118, 254
LpnPI	CCDG	8 cut(s)	30, 81, 81, 108, 171, 180, 254, 336
LweI	GCATC	1 cut(s)	61
MaeIII	GTNAC	3 cut(s)	77, 211, 301
MalI	GATC	3 cut(s)	64, 120, 256
MboI	GATC	3 cut(s)	62, 118, 254
MboII	GAAGA	2 cut(s)	116, 185
MflI	RGATCY	1 cut(s)	118
MhlI	GDGCHC	1 cut(s)	251
MluCI	AATT	1 cut(s)	296
MnlI	CCTC	4 cut(s)	103, 135, 144, 227
MseI	TTAA	1 cut(s)	59
MspI	CCGG	1 cut(s)	241
MspR9I	CCNGG	2 cut(s)	96, 242
MvaI	CCWGG	1 cut(s)	96
MwoI	GCNNNNNNNGC	2 cut(s)	41, 182
NciI	CCSGG	1 cut(s)	242
NdeII	GATC	3 cut(s)	62, 118, 254
NlaIV	GGNNCC	1 cut(s)	120
NmuCI	GTSAC	1 cut(s)	211
PasI	CCCWGGG	1 cut(s)	95
Psp6I	CCWGG	1 cut(s)	94
PspGI	CCWGG	1 cut(s)	94
PspN4I	GGNNCC	1 cut(s)	120
PstNI	CAGNNNCTG	1 cut(s)	182
PsuI	RGATCY	1 cut(s)	118
SaqAI	TTAA	1 cut(s)	59
Sau3AI	GATC	3 cut(s)	62, 118, 254
ScrFI	CCNGG	2 cut(s)	96, 242
SduI	GDGCHC	1 cut(s)	251
SetI	ASST	2 cut(s)	70, 155
SfaNI	GCATC	1 cut(s)	61
SfcI	CTRYAG	1 cut(s)	258
Sse9I	AATT	1 cut(s)	296
SsiI	CCGC	1 cut(s)	122
StyD4I	CCNGG	2 cut(s)	94, 240
TaaI	ACNGT	2 cut(s)	40, 307
TasI	AATT	1 cut(s)	296
Tru1I	TTAA	1 cut(s)	59
Tru9I	TTAA	1 cut(s)	59
TscAI	CASTG	1 cut(s)	187
TseFI	GTSAC	1 cut(s)	211
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	3 cut(s)	17, 45, 117
TspGWI	ACGGA	1 cut(s)	186
TspRI	CASTG	1 cut(s)	187
XapI	RAATTY	1 cut(s)	296
XmiI	GTMKAC	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.