Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008047

Physical Location & Seq

Genomic Coordinates Forward (+)

36476044 .. 36476745

Gene Structure 702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0310400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGCTTAGGTTACTCTCTCTGAGAGGTAGGTGGAGGCCGTGGCCTCATGGCGGCGGATCTGCAAATTGGGCTAGAGGAGATGGGATTTCCCGCTCATCTAGCCGTTGGGAGATTGAGGGTTGCGGGGATCCCCGTAGTCAGCTTCTCAAAATTGGGGGAGGTGGTGTGCCTGCGTTGCGGGGATTTTCTCGTGGCGGATATGATGGATCCGGGTCACTCTGGATCGAGGTTGGTTGGATGGGAACGAAACCAGTGACTGGTACTGTTCGATGGGCTGCGCAGTGGAGCGTCGGGCGGCGATCTTCTTCAGGTGTTCATGCTTTGCCGGGTGGCTGGGGGCTGTCGACGGATGGTGACATCGATGATGATGGCAGTGTCGGGCTAGCAGTGGAGCCACCGATCCGTGCCAGAGTGGCACTGACTGCAGTTGGGAGTAACGAAGATGGCAGTGGACAGTGGTGGAAGACCTCCTCAGCCAGCGTTGTCGACCGGAGGCGGACTGGTACTCCGTCGTGCTGGGTTTGGGTGTCCATGGGTTTGGGTGGCCTTAGGAAGTCCAGTTGGGCTTTGAACCCTTCTGGGTCCAGTGCTAGGGCTCCCCTTGCTTTTGGGCCTCTGTCTGGCACATGGGGTAGTTGGGCTGTTGGGCTAGTTTATTTTACTTTTTCCTATTTTCATGTAAGAATTCATATAGGGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0003674 GO:0008150 GO:0019207 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031399 GO:0032268 GO:0042325 GO:0043549 GO:0045859 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051338 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko04068 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 map04068 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410

Pfam Domains

Protein Families

AMPKBI

Protein Analysis

233

Amino Acids

24.8

Weight (kDa)

10.52

Isoelectric Point (pI)

54.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28060 AT2G28060 AT2G28060 AT2G28060
fragaria_vesca	FvH4_3g31260
malus_domestica	MD03G1124800.v1.1 MD11G1141500.v1.1
prunus_persica	Prupe.6G107300_v2.0.a1 Prupe.6G107300_v2.0.a1 Prupe.6G107300_v2.0.a1
pyrus_communis	pycom11g11760
rosa_chinensis	RchiOBHm_Chr5g0057871
rosa_laevigata	RLG00000035189
rosa_multiflora	Rmu_sc0005588.1_g000007 Rmu_sc0016426.1_g000003
rosa_roxburghii	Rroxscaffold_1G00022570
rosa_rugosa	Rorug05G0310300 Rorug05G0310300 Rorug05G0310400
rosa_samantha	Rh5AG379000 Rh5BG390100 Rh5CG413900 Rh5DG404600
rosa_wichuraiana	Rw5G035700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	279
AccB7I	CCANNNNNTGG	1 cut(s)	257
AccBSI	CCGCTC	1 cut(s)	93
AccI	GTMKAC	2 cut(s)	344, 486
AciI	CCGC	8 cut(s)	51, 54, 91, 123, 178, 195, 295, 496
AclWI	GGATC	7 cut(s)	64, 122, 135, 201, 214, 230, 394
AcsI	RAATTY	1 cut(s)	684
AcuI	CTGAAG	1 cut(s)	291
AfaI	GTAC	2 cut(s)	262, 505
AfiI	CCNNNNNNNGG	4 cut(s)	50, 257, 591, 620
AgsI	TTSAA	1 cut(s)	571
AluBI	AGCT	1 cut(s)	142
AluI	AGCT	1 cut(s)	142
AlwI	GGATC	7 cut(s)	64, 122, 135, 201, 214, 230, 394
AlwNI	CAGNNNCTG	1 cut(s)	257
AoxI	GGCC	4 cut(s)	35, 41, 544, 611
ApeKI	GCWGC	1 cut(s)	275
ApoI	RAATTY	1 cut(s)	684
AspLEI	GCGC	1 cut(s)	280
AspS9I	GGNCC	2 cut(s)	582, 611
AsuC2I	CCSGG	2 cut(s)	211, 327
AsuHPI	GGTGA	1 cut(s)	365
AsuNHI	GCTAGC	1 cut(s)	382
AvaII	GGWCC	1 cut(s)	582
AxyI	CCTNAGG	1 cut(s)	548
BamHI	GGATCC	2 cut(s)	127, 206
BanII	GRGCYC	1 cut(s)	598
BauI	CACGAG	1 cut(s)	189
BbsI	GAAGAC	1 cut(s)	470
BbvCI	CCTCAGC	1 cut(s)	472
BbvI	GCAGC	1 cut(s)	262
BccI	CCATC	7 cut(s)	74, 197, 232, 264, 344, 362, 437
BceAI	ACGGC	2 cut(s)	22, 87
BcnI	CCSGG	2 cut(s)	211, 327
BfaI	CTAG	5 cut(s)	72, 99, 383, 591, 650
BfmI	CTRYAG	1 cut(s)	423
BglI	GCCNNNNNGGC	1 cut(s)	413
BisI	GCNGC	3 cut(s)	52, 276, 296
BlsI	GCNGC	3 cut(s)	53, 277, 297
Bme1390I	CCNGG	2 cut(s)	211, 327
Bme18I	GGWCC	1 cut(s)	582
BmgT120I	GGNCC	2 cut(s)	582, 611
BmiI	GGNNCC	5 cut(s)	129, 208, 393, 583, 597
BmrFI	CCNGG	2 cut(s)	211, 327
BmtI	GCTAGC	1 cut(s)	386
BpiI	GAAGAC	1 cut(s)	470
Bpu10I	CCTNAGC	2 cut(s)	5, 472
BpuMI	CCSGG	2 cut(s)	211, 327
Bsa29I	ATCGAT	1 cut(s)	360
BsaJI	CCNNGG	2 cut(s)	38, 531
BsaWI	WCCGGW	1 cut(s)	489
BsaXI	ACNNNNNCTCC	4 cut(s)	150, 180, 490, 520
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 257, 591, 620
Bse1I	ACTGG	5 cut(s)	251, 262, 505, 558, 585
Bse21I	CCTNAGG	1 cut(s)	548
BseCI	ATCGAT	1 cut(s)	360
BseDI	CCNNGG	2 cut(s)	38, 531
BseGI	GGATG	2 cut(s)	243, 355
BseLI	CCNNNNNNNGG	4 cut(s)	50, 257, 591, 620
BseMII	CTCAG	2 cut(s)	11, 486
BseNI	ACTGG	5 cut(s)	251, 262, 505, 558, 585
BseRI	GAGGAG	2 cut(s)	90, 460
BseXI	GCAGC	1 cut(s)	262
BseYI	CCCAGC	2 cut(s)	333, 516
Bsh1285I	CGRYCG	1 cut(s)	490
BshFI	GGCC	4 cut(s)	37, 43, 546, 613
BshVI	ATCGAT	1 cut(s)	360
BsiEI	CGRYCG	1 cut(s)	490
BsiSI	CCGG	3 cut(s)	210, 326, 490
BslI	CCNNNNNNNGG	4 cut(s)	50, 257, 591, 620
BsnI	GGCC	4 cut(s)	37, 43, 546, 613
Bsp1286I	GDGCHC	1 cut(s)	598
Bsp143I	GATC	6 cut(s)	56, 127, 206, 222, 299, 399
Bsp19I	CCATGG	1 cut(s)	531
BspACI	CCGC	8 cut(s)	51, 54, 91, 123, 178, 195, 295, 496
BspANI	GGCC	4 cut(s)	37, 43, 546, 613
BspCNI	CTCAG	2 cut(s)	12, 485
BspDI	ATCGAT	1 cut(s)	360
BspLI	GGNNCC	5 cut(s)	129, 208, 393, 583, 597
BspMAI	CTGCAG	1 cut(s)	427
BspOI	GCTAGC	1 cut(s)	386
BspPI	GGATC	7 cut(s)	64, 122, 135, 201, 214, 230, 394
BsrBI	CCGCTC	1 cut(s)	93
BsrI	ACTGG	5 cut(s)	251, 262, 505, 558, 585
BssECI	CCNNGG	2 cut(s)	38, 531
BssMI	GATC	6 cut(s)	56, 127, 206, 222, 299, 399
BssSI	CACGAG	1 cut(s)	189
BssT1I	CCWWGG	1 cut(s)	531
Bst2BI	CACGAG	1 cut(s)	189
Bst4CI	ACNGT	2 cut(s)	265, 456
BstAPI	GCANNNNNTGC	1 cut(s)	422
BstC8I	GCNNGC	3 cut(s)	171, 384, 478
BstDEI	CTNAG	4 cut(s)	5, 20, 472, 548
BstDSI	CCRYGG	2 cut(s)	38, 531
BstF5I	GGATG	2 cut(s)	243, 355
BstHHI	GCGC	1 cut(s)	280
BstKTI	GATC	6 cut(s)	59, 130, 209, 225, 302, 402
BstMBI	GATC	6 cut(s)	56, 127, 206, 222, 299, 399
BstMCI	CGRYCG	1 cut(s)	490
BstMWI	GCNNNNNNNGC	6 cut(s)	68, 99, 175, 413, 422, 602
BstSCI	CCNGG	2 cut(s)	209, 325
BstSFI	CTRYAG	1 cut(s)	423
BstV1I	GCAGC	1 cut(s)	262
BstV2I	GAAGAC	1 cut(s)	470
BstX2I	RGATCY	3 cut(s)	56, 127, 206
BstXI	CCANNNNNNTGG	1 cut(s)	538
BstYI	RGATCY	3 cut(s)	56, 127, 206
Bsu15I	ATCGAT	1 cut(s)	360
Bsu36I	CCTNAGG	1 cut(s)	548
BsuRI	GGCC	4 cut(s)	37, 43, 546, 613
BsuTUI	ATCGAT	1 cut(s)	360
BtgI	CCRYGG	2 cut(s)	38, 531
BtsCI	GGATG	2 cut(s)	243, 355
BtsI	GCAGTG	4 cut(s)	287, 379, 393, 454
BtsIMutI	CAGTG	8 cut(s)	258, 287, 379, 393, 416, 454, 461, 592
Cac8I	GCNNGC	3 cut(s)	171, 384, 478
CaiI	CAGNNNCTG	1 cut(s)	257
CfoI	GCGC	1 cut(s)	280
Cfr13I	GGNCC	2 cut(s)	582, 611
ClaI	ATCGAT	1 cut(s)	360
CseI	GACGC	1 cut(s)	277
Csp6I	GTAC	2 cut(s)	261, 504
CviAII	CATG	5 cut(s)	47, 317, 532, 627, 677
CviQI	GTAC	2 cut(s)	261, 504
DdeI	CTNAG	4 cut(s)	5, 20, 472, 548
DpnI	GATC	6 cut(s)	58, 129, 208, 224, 301, 401
DpnII	GATC	6 cut(s)	56, 127, 206, 222, 299, 399
EciI	GGCGGA	3 cut(s)	69, 210, 511
Eco130I	CCWWGG	1 cut(s)	531
Eco24I	GRGCYC	1 cut(s)	598
Eco47I	GGWCC	1 cut(s)	582
Eco57I	CTGAAG	1 cut(s)	291
Eco81I	CCTNAGG	1 cut(s)	548
EcoRI	GAATTC	1 cut(s)	684
EcoT14I	CCWWGG	1 cut(s)	531
EcoT38I	GRGCYC	1 cut(s)	598
ErhI	CCWWGG	1 cut(s)	531
FaeI	CATG	5 cut(s)	50, 320, 535, 630, 680
FaiI	YATR	8 cut(s)	48, 201, 318, 533, 628, 678, 690, 692
FatI	CATG	5 cut(s)	46, 316, 531, 626, 676
FauI	CCCGC	3 cut(s)	98, 116, 171
FblI	GTMKAC	2 cut(s)	344, 486
Fnu4HI	GCNGC	3 cut(s)	52, 276, 296
FokI	GGATG	2 cut(s)	250, 362
FriOI	GRGCYC	1 cut(s)	598
Fsp4HI	GCNGC	3 cut(s)	52, 276, 296
FspBI	CTAG	5 cut(s)	72, 99, 383, 591, 650
FspI	TGCGCA	1 cut(s)	279
GlaI	GCGC	1 cut(s)	279
GluI	GCNGC	3 cut(s)	52, 276, 296
GsaI	CCCAGC	2 cut(s)	337, 520
HaeIII	GGCC	4 cut(s)	37, 43, 546, 613
HapII	CCGG	3 cut(s)	210, 326, 490
HgaI	GACGC	1 cut(s)	277
HhaI	GCGC	1 cut(s)	280
Hin1II	CATG	5 cut(s)	50, 320, 535, 630, 680
Hin6I	GCGC	1 cut(s)	278
HinP1I	GCGC	1 cut(s)	278
HincII	GTYRAC	2 cut(s)	345, 487
HindII	GTYRAC	2 cut(s)	345, 487
HpaII	CCGG	3 cut(s)	210, 326, 490
HphI	GGTGA	1 cut(s)	365
Hpy166II	GTNNAC	3 cut(s)	345, 452, 487
Hpy188I	TCNGA	1 cut(s)	21
Hpy188III	TCNNGA	1 cut(s)	220
Hpy8I	GTNNAC	3 cut(s)	345, 452, 487
Hpy99I	CGWCG	3 cut(s)	293, 349, 514
HpyAV	CCTTC	1 cut(s)	585
HpyCH4III	ACNGT	2 cut(s)	265, 456
HpyCH4V	TGCA	2 cut(s)	62, 425
HpyF10VI	GCNNNNNNNGC	6 cut(s)	68, 99, 175, 413, 422, 602
HpyF3I	CTNAG	4 cut(s)	5, 20, 472, 548
Hsp92II	CATG	5 cut(s)	50, 320, 535, 630, 680
HspAI	GCGC	1 cut(s)	278
Kzo9I	GATC	6 cut(s)	56, 127, 206, 222, 299, 399
LmnI	GCTCC	3 cut(s)	285, 391, 601
Lsp1109I	GCAGC	1 cut(s)	262
MaeI	CTAG	5 cut(s)	72, 99, 383, 591, 650
MaeIII	GTNAC	5 cut(s)	9, 213, 253, 353, 434
MalI	GATC	6 cut(s)	58, 129, 208, 224, 301, 401
MbiI	CCGCTC	1 cut(s)	93
MboI	GATC	6 cut(s)	56, 127, 206, 222, 299, 399
MboII	GAAGA	4 cut(s)	294, 297, 452, 475
MflI	RGATCY	3 cut(s)	56, 127, 206
MhlI	GDGCHC	1 cut(s)	598
MluCI	AATT	3 cut(s)	64, 150, 684
MmeI	TCCRAC	1 cut(s)	215
MspI	CCGG	3 cut(s)	210, 326, 490
MspR9I	CCNGG	2 cut(s)	211, 327
MwoI	GCNNNNNNNGC	6 cut(s)	68, 99, 175, 413, 422, 602
NciI	CCSGG	2 cut(s)	211, 327
NcoI	CCATGG	1 cut(s)	531
NdeII	GATC	6 cut(s)	56, 127, 206, 222, 299, 399
NheI	GCTAGC	1 cut(s)	382
NlaIII	CATG	5 cut(s)	50, 320, 535, 630, 680
NlaIV	GGNNCC	5 cut(s)	129, 208, 393, 583, 597
NmuCI	GTSAC	3 cut(s)	213, 253, 353
NsbI	TGCGCA	1 cut(s)	279
PflMI	CCANNNNNTGG	1 cut(s)	257
PkrI	GCNGC	3 cut(s)	53, 277, 297
PspFI	CCCAGC	2 cut(s)	333, 516
PspN4I	GGNNCC	5 cut(s)	129, 208, 393, 583, 597
PspPI	GGNCC	2 cut(s)	582, 611
PstI	CTGCAG	1 cut(s)	427
PstNI	CAGNNNCTG	1 cut(s)	257
PsuI	RGATCY	3 cut(s)	56, 127, 206
RsaI	GTAC	2 cut(s)	262, 505
RsaNI	GTAC	2 cut(s)	261, 504
SalI	GTCGAC	2 cut(s)	343, 485
SatI	GCNGC	3 cut(s)	52, 276, 296
Sau3AI	GATC	6 cut(s)	56, 127, 206, 222, 299, 399
Sau96I	GGNCC	2 cut(s)	582, 611
ScrFI	CCNGG	2 cut(s)	211, 327
SduI	GDGCHC	1 cut(s)	598
SetI	ASST	8 cut(s)	11, 28, 32, 144, 163, 231, 313, 470
SfcI	CTRYAG	1 cut(s)	423
SinI	GGWCC	1 cut(s)	582
Sse9I	AATT	3 cut(s)	64, 150, 684
SsiI	CCGC	8 cut(s)	51, 54, 91, 123, 178, 195, 295, 496
SspMI	CTAG	5 cut(s)	72, 99, 383, 591, 650
StyD4I	CCNGG	2 cut(s)	209, 325
StyI	CCWWGG	1 cut(s)	531
TaaI	ACNGT	2 cut(s)	265, 456
TaqI	TCGA	5 cut(s)	225, 268, 344, 360, 486
TasI	AATT	3 cut(s)	64, 150, 684
TauI	GCSGC	2 cut(s)	54, 298
TscAI	CASTG	8 cut(s)	258, 287, 379, 393, 423, 454, 461, 592
TseFI	GTSAC	3 cut(s)	213, 253, 353
TseI	GCWGC	1 cut(s)	275
Tsp45I	GTSAC	3 cut(s)	213, 253, 353
TspDTI	ATGAA	3 cut(s)	305, 665, 677
TspGWI	ACGGA	3 cut(s)	362, 392, 498
TspRI	CASTG	8 cut(s)	258, 287, 379, 393, 423, 454, 461, 592
Van91I	CCANNNNNTGG	1 cut(s)	257
VpaK11BI	GGWCC	1 cut(s)	582
XapI	RAATTY	1 cut(s)	684
XmiI	GTMKAC	2 cut(s)	344, 486
XspI	CTAG	5 cut(s)	72, 99, 383, 591, 650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.