Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0008047

Physical Location & Seq

Genomic Coordinates Reverse (-)

64741657 .. 64748569

Gene Structure 6913 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG379000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGGTCTTAACATAAACTTTTCTGTGCAGGATGAAGCAACTGTTGCGGGATTTGAAGTTTTAAGATCACCTGATTCAAGTTACAACAATATGTATCCTGGGAATGAAGATGAGTCACGGGATCCACCAATTGTCCCTCCACACCTGCAACAGACCTTACTTAGTTACCCAGCAAGTAGAGACACTGCTGGAACTCTTCCTTCGCCCCCAAATGTGACCCTCAACCACCTTTACATTGAGAATCGGGAGAGCCCCCGGTCTGTGGTCGCACTTGGGTTCACTCATCGCTTTCGTTCAAAATTTGTTACAGTTGTGCTTTATAAACCAGTTCAAAGAAGGGGGGCTAGCAGCACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0003674 GO:0008150 GO:0019207 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031399 GO:0032268 GO:0042325 GO:0043549 GO:0045859 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051338 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko04068 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 map04068 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410

Pfam Domains

Protein Families

AMPKBI

Protein Analysis

118

Amino Acids

13.12

Weight (kDa)

6.83

Isoelectric Point (pI)

72.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMPKBI	PF04739	39 - 109	4.8e-25	5'-AMP-activated protein kinase beta subunit, interaction domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28060 AT2G28060 AT2G28060 AT2G28060
fragaria_vesca	FvH4_3g31260
malus_domestica	MD03G1124800.v1.1 MD11G1141500.v1.1
prunus_persica	Prupe.6G107300_v2.0.a1 Prupe.6G107300_v2.0.a1 Prupe.6G107300_v2.0.a1
pyrus_communis	pycom11g11760
rosa_chinensis	RchiOBHm_Chr5g0057871
rosa_laevigata	RLG00000035189
rosa_multiflora	Rmu_sc0005588.1_g000007 Rmu_sc0016426.1_g000003
rosa_roxburghii	Rroxscaffold_1G00022570
rosa_rugosa	Rorug05G0310300 Rorug05G0310300 Rorug05G0310400
rosa_samantha	Rh5AG379000 Rh5BG390100 Rh5CG413900 Rh5DG404600
rosa_wichuraiana	Rw5G035700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	321
AarI	CACCTGC	1 cut(s)	153
Acc36I	ACCTGC	1 cut(s)	153
AciI	CCGC	1 cut(s)	47
AclWI	GGATC	2 cut(s)	116, 129
AcsI	RAATTY	1 cut(s)	299
AfiI	CCNNNNNNNGG	1 cut(s)	262
AgsI	TTSAA	4 cut(s)	56, 78, 297, 332
AjnI	CCWGG	1 cut(s)	97
Alw26I	GTCTC	1 cut(s)	174
AlwI	GGATC	2 cut(s)	116, 129
ApeKI	GCWGC	1 cut(s)	348
ApoI	RAATTY	1 cut(s)	299
AsuC2I	CCSGG	1 cut(s)	256
AsuHPI	GGTGA	1 cut(s)	60
AsuNHI	GCTAGC	1 cut(s)	344
BamHI	GGATCC	1 cut(s)	121
BanII	GRGCYC	1 cut(s)	254
BciT130I	CCWGG	1 cut(s)	99
BciVI	GTATCC	1 cut(s)	105
BcnI	CCSGG	1 cut(s)	256
BcoDI	GTCTC	1 cut(s)	174
BfaI	CTAG	1 cut(s)	345
BfuAI	ACCTGC	1 cut(s)	153
BfuI	GTATCC	1 cut(s)	105
BisI	GCNGC	1 cut(s)	349
BlsI	GCNGC	1 cut(s)	350
Bme1390I	CCNGG	2 cut(s)	99, 256
BmiI	GGNNCC	1 cut(s)	123
BmrFI	CCNGG	2 cut(s)	99, 256
BmtI	GCTAGC	1 cut(s)	348
BpuMI	CCSGG	1 cut(s)	256
BsaJI	CCNNGG	2 cut(s)	98, 254
Bsc4I	CCNNNNNNNGG	1 cut(s)	262
Bse1I	ACTGG	1 cut(s)	326
BseBI	CCWGG	1 cut(s)	99
BseDI	CCNNGG	2 cut(s)	98, 254
BseGI	GGATG	1 cut(s)	37
BseLI	CCNNNNNNNGG	1 cut(s)	262
BseNI	ACTGG	1 cut(s)	326
BseYI	CCCAGC	1 cut(s)	169
BsgI	GTGCAG	1 cut(s)	47
BsiSI	CCGG	1 cut(s)	256
BslFI	GGGAC	1 cut(s)	119
BslI	CCNNNNNNNGG	1 cut(s)	262
BsmAI	GTCTC	1 cut(s)	174
BsmFI	GGGAC	1 cut(s)	119
Bsp1286I	GDGCHC	1 cut(s)	254
Bsp143I	GATC	2 cut(s)	65, 121
BspACI	CCGC	1 cut(s)	47
BspLI	GGNNCC	1 cut(s)	123
BspMI	ACCTGC	1 cut(s)	153
BspOI	GCTAGC	1 cut(s)	348
BspPI	GGATC	2 cut(s)	116, 129
BsrI	ACTGG	1 cut(s)	326
BssECI	CCNNGG	2 cut(s)	98, 254
BssMI	GATC	2 cut(s)	65, 121
Bst2UI	CCWGG	1 cut(s)	99
Bst4CI	ACNGT	2 cut(s)	43, 310
Bst6I	CTCTTC	1 cut(s)	201
BstAPI	GCANNNNNTGC	1 cut(s)	44
BstC8I	GCNNGC	1 cut(s)	346
BstDEI	CTNAG	2 cut(s)	161, 354
BstF5I	GGATG	1 cut(s)	37
BstKTI	GATC	2 cut(s)	68, 124
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	2 cut(s)	65, 121
BstMWI	GCNNNNNNNGC	1 cut(s)	44
BstNI	CCWGG	1 cut(s)	99
BstSCI	CCNGG	2 cut(s)	97, 254
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BsuI	GTATCC	1 cut(s)	105
BtgZI	GCGATG	1 cut(s)	269
BtsCI	GGATG	1 cut(s)	37
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	1 cut(s)	183
BveI	ACCTGC	1 cut(s)	153
Cac8I	GCNNGC	1 cut(s)	346
CviJI	RGCY	2 cut(s)	252, 344
CviKI_1	RGCY	2 cut(s)	252, 344
DdeI	CTNAG	2 cut(s)	161, 354
DpnI	GATC	2 cut(s)	67, 123
DpnII	GATC	2 cut(s)	65, 121
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
Eco24I	GRGCYC	1 cut(s)	254
EcoRII	CCWGG	1 cut(s)	97
EcoT38I	GRGCYC	1 cut(s)	254
FaiI	YATR	3 cut(s)	14, 92, 321
FaqI	GGGAC	1 cut(s)	119
FauI	CCCGC	1 cut(s)	40
Fnu4HI	GCNGC	1 cut(s)	349
FokI	GGATG	1 cut(s)	44
FriOI	GRGCYC	1 cut(s)	254
Fsp4HI	GCNGC	1 cut(s)	349
FspBI	CTAG	1 cut(s)	345
GluI	GCNGC	1 cut(s)	349
GsaI	CCCAGC	1 cut(s)	173
HapII	CCGG	1 cut(s)	256
HinfI	GANTC	3 cut(s)	74, 113, 241
HpaII	CCGG	1 cut(s)	256
HphI	GGTGA	1 cut(s)	60
Hpy166II	GTNNAC	1 cut(s)	279
Hpy188III	TCNNGA	1 cut(s)	245
Hpy8I	GTNNAC	1 cut(s)	279
HpyAV	CCTTC	2 cut(s)	210, 330
HpyCH4III	ACNGT	2 cut(s)	43, 310
HpyCH4V	TGCA	2 cut(s)	28, 148
HpyF10VI	GCNNNNNNNGC	1 cut(s)	44
HpyF3I	CTNAG	2 cut(s)	161, 354
Kzo9I	GATC	2 cut(s)	65, 121
LpnPI	CCDG	9 cut(s)	14, 84, 84, 111, 158, 174, 183, 269, 339
MaeI	CTAG	1 cut(s)	345
MaeIII	GTNAC	5 cut(s)	80, 114, 164, 214, 304
MalI	GATC	2 cut(s)	67, 123
MboI	GATC	2 cut(s)	65, 121
MboII	GAAGA	2 cut(s)	119, 188
MfeI	CAATTG	1 cut(s)	129
MflI	RGATCY	1 cut(s)	121
MhlI	GDGCHC	1 cut(s)	254
MluCI	AATT	2 cut(s)	129, 299
MlyI	GAGTC	1 cut(s)	122
MnlI	CCTC	2 cut(s)	147, 230
MseI	TTAA	2 cut(s)	9, 62
MspI	CCGG	1 cut(s)	256
MspR9I	CCNGG	2 cut(s)	99, 256
MunI	CAATTG	1 cut(s)	129
MvaI	CCWGG	1 cut(s)	99
MwoI	GCNNNNNNNGC	1 cut(s)	44
NciI	CCSGG	1 cut(s)	256
NdeII	GATC	2 cut(s)	65, 121
NheI	GCTAGC	1 cut(s)	344
NlaIV	GGNNCC	1 cut(s)	123
NmuCI	GTSAC	2 cut(s)	114, 214
PaqCI	CACCTGC	1 cut(s)	153
PfeI	GAWTC	2 cut(s)	74, 241
PkrI	GCNGC	1 cut(s)	350
PleI	GAGTC	1 cut(s)	121
PpsI	GAGTC	1 cut(s)	121
PsiI	TTATAA	1 cut(s)	321
Psp6I	CCWGG	1 cut(s)	97
PspFI	CCCAGC	1 cut(s)	169
PspGI	CCWGG	1 cut(s)	97
PspN4I	GGNNCC	1 cut(s)	123
PsuI	RGATCY	1 cut(s)	121
SaqAI	TTAA	2 cut(s)	9, 62
SatI	GCNGC	1 cut(s)	349
Sau3AI	GATC	2 cut(s)	65, 121
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	2 cut(s)	99, 256
SduI	GDGCHC	1 cut(s)	254
SetI	ASST	4 cut(s)	73, 147, 158, 231
Sse9I	AATT	2 cut(s)	129, 299
SsiI	CCGC	1 cut(s)	47
SspMI	CTAG	1 cut(s)	345
StyD4I	CCNGG	2 cut(s)	97, 254
TaaI	ACNGT	2 cut(s)	43, 310
TasI	AATT	2 cut(s)	129, 299
TfiI	GAWTC	2 cut(s)	74, 241
Tru1I	TTAA	2 cut(s)	9, 62
Tru9I	TTAA	2 cut(s)	9, 62
TscAI	CASTG	1 cut(s)	190
TseFI	GTSAC	2 cut(s)	114, 214
TseI	GCWGC	1 cut(s)	348
Tsp45I	GTSAC	2 cut(s)	114, 214
TspDTI	ATGAA	2 cut(s)	48, 120
TspRI	CASTG	1 cut(s)	190
XapI	RAATTY	1 cut(s)	299
XspI	CTAG	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.