Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0008047

Physical Location & Seq

Genomic Coordinates Reverse (-)

56037450 .. 56037875

Gene Structure 426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG413900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGAACAACTCATATGATGAAGATTATGATGAAGCAACTGTTGCGGGATTTGAAGTTTTAAGATCACCTGATTCAAGTTACAACAATATGTATCCTGGGAATGAAGATGAGTCACGGGATCCACCAATTGTCCCTCCACACCTGCAACAGACCTTACTTAGTTACCCAGCAAGTAGAGACACTGCTGGAACTCTTCCTTCGCCCCCAAACGTGACCCTCAACCACCTTTACATTGAGAATCGGGAGAGCCCCCGGTCTGTGGTCGCACTTGGGTTCACTCATCGCTTTCGTTCAAAATTTGTTACCGTTGTGCTTTATAAACCAGTTCAAAGAAGGGGGGCTAGCAGCACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0003674 GO:0008150 GO:0019207 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031399 GO:0032268 GO:0042325 GO:0043549 GO:0045859 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051338 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko04068 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 map04068 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410

Pfam Domains

Protein Families

AMPKBI

Protein Analysis

117

Amino Acids

13.15

Weight (kDa)

5.51

Isoelectric Point (pI)

75.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMPKBI	PF04739	38 - 108	4.7e-25	5'-AMP-activated protein kinase beta subunit, interaction domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28060 AT2G28060 AT2G28060 AT2G28060
fragaria_vesca	FvH4_3g31260
malus_domestica	MD03G1124800.v1.1 MD11G1141500.v1.1
prunus_persica	Prupe.6G107300_v2.0.a1 Prupe.6G107300_v2.0.a1 Prupe.6G107300_v2.0.a1
pyrus_communis	pycom11g11760
rosa_chinensis	RchiOBHm_Chr5g0057871
rosa_laevigata	RLG00000035189
rosa_multiflora	Rmu_sc0005588.1_g000007 Rmu_sc0016426.1_g000003
rosa_roxburghii	Rroxscaffold_1G00022570
rosa_rugosa	Rorug05G0310300 Rorug05G0310300 Rorug05G0310400
rosa_samantha	Rh5AG379000 Rh5BG390100 Rh5CG413900 Rh5DG404600
rosa_wichuraiana	Rw5G035700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	318
AarI	CACCTGC	1 cut(s)	150
Acc36I	ACCTGC	1 cut(s)	150
AciI	CCGC	1 cut(s)	44
AclWI	GGATC	2 cut(s)	113, 126
AcsI	RAATTY	1 cut(s)	296
AfiI	CCNNNNNNNGG	1 cut(s)	259
AgsI	TTSAA	4 cut(s)	53, 75, 294, 329
AjnI	CCWGG	1 cut(s)	94
Alw26I	GTCTC	1 cut(s)	171
AlwI	GGATC	2 cut(s)	113, 126
ApeKI	GCWGC	1 cut(s)	345
ApoI	RAATTY	1 cut(s)	296
AsuC2I	CCSGG	1 cut(s)	253
AsuHPI	GGTGA	1 cut(s)	57
AsuNHI	GCTAGC	1 cut(s)	341
BamHI	GGATCC	1 cut(s)	118
BanII	GRGCYC	1 cut(s)	251
BciT130I	CCWGG	1 cut(s)	96
BciVI	GTATCC	1 cut(s)	102
BcnI	CCSGG	1 cut(s)	253
BcoDI	GTCTC	1 cut(s)	171
BfaI	CTAG	1 cut(s)	342
BfuAI	ACCTGC	1 cut(s)	150
BfuI	GTATCC	1 cut(s)	102
BisI	GCNGC	1 cut(s)	346
BlsI	GCNGC	1 cut(s)	347
Bme1390I	CCNGG	2 cut(s)	96, 253
BmiI	GGNNCC	1 cut(s)	120
BmrFI	CCNGG	2 cut(s)	96, 253
BmtI	GCTAGC	1 cut(s)	345
BpuMI	CCSGG	1 cut(s)	253
BsaJI	CCNNGG	2 cut(s)	95, 251
Bsc4I	CCNNNNNNNGG	1 cut(s)	259
Bse1I	ACTGG	1 cut(s)	323
BseBI	CCWGG	1 cut(s)	96
BseDI	CCNNGG	2 cut(s)	95, 251
BseLI	CCNNNNNNNGG	1 cut(s)	259
BseNI	ACTGG	1 cut(s)	323
BseYI	CCCAGC	1 cut(s)	166
BsiSI	CCGG	1 cut(s)	253
BslFI	GGGAC	1 cut(s)	116
BslI	CCNNNNNNNGG	1 cut(s)	259
BsmAI	GTCTC	1 cut(s)	171
BsmFI	GGGAC	1 cut(s)	116
Bsp1286I	GDGCHC	1 cut(s)	251
Bsp143I	GATC	2 cut(s)	62, 118
BspACI	CCGC	1 cut(s)	44
BspLI	GGNNCC	1 cut(s)	120
BspMI	ACCTGC	1 cut(s)	150
BspOI	GCTAGC	1 cut(s)	345
BspPI	GGATC	2 cut(s)	113, 126
BsrI	ACTGG	1 cut(s)	323
BssECI	CCNNGG	2 cut(s)	95, 251
BssMI	GATC	2 cut(s)	62, 118
Bst2UI	CCWGG	1 cut(s)	96
Bst4CI	ACNGT	2 cut(s)	40, 307
Bst6I	CTCTTC	1 cut(s)	198
BstAPI	GCANNNNNTGC	1 cut(s)	41
BstC8I	GCNNGC	1 cut(s)	343
BstDEI	CTNAG	2 cut(s)	158, 351
BstKTI	GATC	2 cut(s)	65, 121
BstMAI	GTCTC	1 cut(s)	171
BstMBI	GATC	2 cut(s)	62, 118
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstNI	CCWGG	1 cut(s)	96
BstSCI	CCNGG	2 cut(s)	94, 251
BstX2I	RGATCY	1 cut(s)	118
BstYI	RGATCY	1 cut(s)	118
BsuI	GTATCC	1 cut(s)	102
BtgZI	GCGATG	1 cut(s)	266
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	180
BveI	ACCTGC	1 cut(s)	150
Cac8I	GCNNGC	1 cut(s)	343
CviJI	RGCY	2 cut(s)	249, 341
CviKI_1	RGCY	2 cut(s)	249, 341
DdeI	CTNAG	2 cut(s)	158, 351
DpnI	GATC	2 cut(s)	64, 120
DpnII	GATC	2 cut(s)	62, 118
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
Eco24I	GRGCYC	1 cut(s)	251
EcoRII	CCWGG	1 cut(s)	94
EcoT38I	GRGCYC	1 cut(s)	251
FaiI	YATR	5 cut(s)	13, 15, 27, 89, 318
FaqI	GGGAC	1 cut(s)	116
FauI	CCCGC	1 cut(s)	37
FauNDI	CATATG	1 cut(s)	13
Fnu4HI	GCNGC	1 cut(s)	346
FriOI	GRGCYC	1 cut(s)	251
Fsp4HI	GCNGC	1 cut(s)	346
FspBI	CTAG	1 cut(s)	342
GluI	GCNGC	1 cut(s)	346
GsaI	CCCAGC	1 cut(s)	170
HapII	CCGG	1 cut(s)	253
HinfI	GANTC	3 cut(s)	71, 110, 238
HpaII	CCGG	1 cut(s)	253
HphI	GGTGA	1 cut(s)	57
Hpy166II	GTNNAC	1 cut(s)	276
Hpy188III	TCNNGA	1 cut(s)	242
Hpy8I	GTNNAC	1 cut(s)	276
HpyAV	CCTTC	2 cut(s)	207, 327
HpyCH4III	ACNGT	2 cut(s)	40, 307
HpyCH4IV	ACGT	1 cut(s)	210
HpyCH4V	TGCA	1 cut(s)	145
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpyF3I	CTNAG	2 cut(s)	158, 351
HpySE526I	ACGT	1 cut(s)	210
Kzo9I	GATC	2 cut(s)	62, 118
LpnPI	CCDG	8 cut(s)	81, 81, 108, 155, 171, 180, 266, 336
MaeI	CTAG	1 cut(s)	342
MaeII	ACGT	1 cut(s)	210
MaeIII	GTNAC	5 cut(s)	77, 111, 161, 211, 301
MalI	GATC	2 cut(s)	64, 120
MboI	GATC	2 cut(s)	62, 118
MboII	GAAGA	3 cut(s)	32, 116, 185
MfeI	CAATTG	1 cut(s)	126
MflI	RGATCY	1 cut(s)	118
MhlI	GDGCHC	1 cut(s)	251
MluCI	AATT	2 cut(s)	126, 296
MlyI	GAGTC	1 cut(s)	119
MnlI	CCTC	2 cut(s)	144, 227
MseI	TTAA	1 cut(s)	59
MspI	CCGG	1 cut(s)	253
MspR9I	CCNGG	2 cut(s)	96, 253
MunI	CAATTG	1 cut(s)	126
MvaI	CCWGG	1 cut(s)	96
MwoI	GCNNNNNNNGC	1 cut(s)	41
NciI	CCSGG	1 cut(s)	253
NdeI	CATATG	1 cut(s)	13
NdeII	GATC	2 cut(s)	62, 118
NheI	GCTAGC	1 cut(s)	341
NlaIV	GGNNCC	1 cut(s)	120
NmuCI	GTSAC	2 cut(s)	111, 211
PaqCI	CACCTGC	1 cut(s)	150
PfeI	GAWTC	2 cut(s)	71, 238
PkrI	GCNGC	1 cut(s)	347
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
PsiI	TTATAA	1 cut(s)	318
Psp6I	CCWGG	1 cut(s)	94
PspFI	CCCAGC	1 cut(s)	166
PspGI	CCWGG	1 cut(s)	94
PspN4I	GGNNCC	1 cut(s)	120
PsuI	RGATCY	1 cut(s)	118
SaqAI	TTAA	1 cut(s)	59
SatI	GCNGC	1 cut(s)	346
Sau3AI	GATC	2 cut(s)	62, 118
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	2 cut(s)	96, 253
SduI	GDGCHC	1 cut(s)	251
SetI	ASST	5 cut(s)	70, 144, 155, 213, 228
Sse9I	AATT	2 cut(s)	126, 296
SsiI	CCGC	1 cut(s)	44
SspMI	CTAG	1 cut(s)	342
StyD4I	CCNGG	2 cut(s)	94, 251
TaaI	ACNGT	2 cut(s)	40, 307
TaiI	ACGT	1 cut(s)	213
TasI	AATT	2 cut(s)	126, 296
TfiI	GAWTC	2 cut(s)	71, 238
Tru1I	TTAA	1 cut(s)	59
Tru9I	TTAA	1 cut(s)	59
TscAI	CASTG	1 cut(s)	187
TseFI	GTSAC	2 cut(s)	111, 211
TseI	GCWGC	1 cut(s)	345
Tsp45I	GTSAC	2 cut(s)	111, 211
TspDTI	ATGAA	4 cut(s)	17, 33, 45, 117
TspRI	CASTG	1 cut(s)	187
XapI	RAATTY	1 cut(s)	296
XspI	CTAG	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.