Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0008047

Physical Location & Seq

Genomic Coordinates Reverse (-)

62091656 .. 62092797

Gene Structure 1142 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G035700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGAAGTAGGACAATGGGATGAAGCAACTGTTGCGGGATTTGAAGTTTTAAGATCACCTGATTCAAGTTACAACAATATGTATCCTGGGAATGAAGATGAGTCACGGGATCCACCAATTGTCCCTCCACACCTGCAACAGACCTTACTTAGTTACCCAGCAAGTAGAGACACTGCTGGAACTCTTCCTTCGCCCCCAAACGTGACCCTCAACCACCTTTACATTGAGAATCGGGAGAGCCCCCGGTCTGTGGTCGCACTTGGGTTCACTCATCGCTTTCGTTCAAAATTTGTTACAGTTGTGCTTTATAAACCAGTTCAAAGAAGGGGGGCTAGCAGCACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0003674 GO:0008150 GO:0019207 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031399 GO:0032268 GO:0042325 GO:0043549 GO:0045859 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051338 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko04068 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 map04068 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410

Pfam Domains

Protein Families

AMPKBI

Protein Analysis

114

Amino Acids

12.74

Weight (kDa)

6.27

Isoelectric Point (pI)

70.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMPKBI	PF04739	35 - 105	4.4e-25	5'-AMP-activated protein kinase beta subunit, interaction domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28060 AT2G28060 AT2G28060 AT2G28060
fragaria_vesca	FvH4_3g31260
malus_domestica	MD03G1124800.v1.1 MD11G1141500.v1.1
prunus_persica	Prupe.6G107300_v2.0.a1 Prupe.6G107300_v2.0.a1 Prupe.6G107300_v2.0.a1
pyrus_communis	pycom11g11760
rosa_chinensis	RchiOBHm_Chr5g0057871
rosa_laevigata	RLG00000035189
rosa_multiflora	Rmu_sc0005588.1_g000007 Rmu_sc0016426.1_g000003
rosa_roxburghii	Rroxscaffold_1G00022570
rosa_rugosa	Rorug05G0310300 Rorug05G0310300 Rorug05G0310400
rosa_samantha	Rh5AG379000 Rh5BG390100 Rh5CG413900 Rh5DG404600
rosa_wichuraiana	Rw5G035700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	309
AarI	CACCTGC	1 cut(s)	141
Acc36I	ACCTGC	1 cut(s)	141
AciI	CCGC	1 cut(s)	35
AclWI	GGATC	2 cut(s)	104, 117
AcsI	RAATTY	1 cut(s)	287
AfiI	CCNNNNNNNGG	1 cut(s)	250
AgsI	TTSAA	4 cut(s)	44, 66, 285, 320
AjnI	CCWGG	1 cut(s)	85
Alw26I	GTCTC	1 cut(s)	162
AlwI	GGATC	2 cut(s)	104, 117
ApeKI	GCWGC	1 cut(s)	336
ApoI	RAATTY	1 cut(s)	287
AsuC2I	CCSGG	1 cut(s)	244
AsuHPI	GGTGA	1 cut(s)	48
AsuNHI	GCTAGC	1 cut(s)	332
BamHI	GGATCC	1 cut(s)	109
BanII	GRGCYC	1 cut(s)	242
BciT130I	CCWGG	1 cut(s)	87
BciVI	GTATCC	1 cut(s)	93
BcnI	CCSGG	1 cut(s)	244
BcoDI	GTCTC	1 cut(s)	162
BfaI	CTAG	1 cut(s)	333
BfuAI	ACCTGC	1 cut(s)	141
BfuI	GTATCC	1 cut(s)	93
BisI	GCNGC	1 cut(s)	337
BlsI	GCNGC	1 cut(s)	338
Bme1390I	CCNGG	2 cut(s)	87, 244
BmiI	GGNNCC	1 cut(s)	111
BmrFI	CCNGG	2 cut(s)	87, 244
BmtI	GCTAGC	1 cut(s)	336
BpuMI	CCSGG	1 cut(s)	244
BsaJI	CCNNGG	2 cut(s)	86, 242
Bsc4I	CCNNNNNNNGG	1 cut(s)	250
Bse1I	ACTGG	1 cut(s)	314
BseBI	CCWGG	1 cut(s)	87
BseDI	CCNNGG	2 cut(s)	86, 242
BseGI	GGATG	1 cut(s)	25
BseLI	CCNNNNNNNGG	1 cut(s)	250
BseNI	ACTGG	1 cut(s)	314
BseYI	CCCAGC	1 cut(s)	157
BsiSI	CCGG	1 cut(s)	244
BslFI	GGGAC	1 cut(s)	107
BslI	CCNNNNNNNGG	1 cut(s)	250
BsmAI	GTCTC	1 cut(s)	162
BsmFI	GGGAC	1 cut(s)	107
Bsp1286I	GDGCHC	1 cut(s)	242
Bsp143I	GATC	2 cut(s)	53, 109
BspACI	CCGC	1 cut(s)	35
BspLI	GGNNCC	1 cut(s)	111
BspMI	ACCTGC	1 cut(s)	141
BspOI	GCTAGC	1 cut(s)	336
BspPI	GGATC	2 cut(s)	104, 117
BsrI	ACTGG	1 cut(s)	314
BssECI	CCNNGG	2 cut(s)	86, 242
BssMI	GATC	2 cut(s)	53, 109
Bst2UI	CCWGG	1 cut(s)	87
Bst4CI	ACNGT	2 cut(s)	31, 298
Bst6I	CTCTTC	1 cut(s)	189
BstAPI	GCANNNNNTGC	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	334
BstDEI	CTNAG	2 cut(s)	149, 342
BstF5I	GGATG	1 cut(s)	25
BstKTI	GATC	2 cut(s)	56, 112
BstMAI	GTCTC	1 cut(s)	162
BstMBI	GATC	2 cut(s)	53, 109
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstNI	CCWGG	1 cut(s)	87
BstSCI	CCNGG	2 cut(s)	85, 242
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
BsuI	GTATCC	1 cut(s)	93
BtgZI	GCGATG	1 cut(s)	257
BtsCI	GGATG	1 cut(s)	25
BtsI	GCAGTG	1 cut(s)	171
BtsIMutI	CAGTG	1 cut(s)	171
BveI	ACCTGC	1 cut(s)	141
Cac8I	GCNNGC	1 cut(s)	334
CviJI	RGCY	2 cut(s)	240, 332
CviKI_1	RGCY	2 cut(s)	240, 332
DdeI	CTNAG	2 cut(s)	149, 342
DpnI	GATC	2 cut(s)	55, 111
DpnII	GATC	2 cut(s)	53, 109
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
Eco24I	GRGCYC	1 cut(s)	242
EcoRII	CCWGG	1 cut(s)	85
EcoT38I	GRGCYC	1 cut(s)	242
FaiI	YATR	2 cut(s)	80, 309
FaqI	GGGAC	1 cut(s)	107
FauI	CCCGC	1 cut(s)	28
Fnu4HI	GCNGC	1 cut(s)	337
FokI	GGATG	1 cut(s)	32
FriOI	GRGCYC	1 cut(s)	242
Fsp4HI	GCNGC	1 cut(s)	337
FspBI	CTAG	1 cut(s)	333
GluI	GCNGC	1 cut(s)	337
GsaI	CCCAGC	1 cut(s)	161
HapII	CCGG	1 cut(s)	244
HinfI	GANTC	3 cut(s)	62, 101, 229
HpaII	CCGG	1 cut(s)	244
HphI	GGTGA	1 cut(s)	48
Hpy166II	GTNNAC	1 cut(s)	267
Hpy188III	TCNNGA	1 cut(s)	233
Hpy8I	GTNNAC	1 cut(s)	267
HpyAV	CCTTC	2 cut(s)	198, 318
HpyCH4III	ACNGT	2 cut(s)	31, 298
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	1 cut(s)	136
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
HpyF3I	CTNAG	2 cut(s)	149, 342
HpySE526I	ACGT	1 cut(s)	201
Kzo9I	GATC	2 cut(s)	53, 109
LpnPI	CCDG	8 cut(s)	72, 72, 99, 146, 162, 171, 257, 327
MaeI	CTAG	1 cut(s)	333
MaeII	ACGT	1 cut(s)	201
MaeIII	GTNAC	5 cut(s)	68, 102, 152, 202, 292
MalI	GATC	2 cut(s)	55, 111
MboI	GATC	2 cut(s)	53, 109
MboII	GAAGA	2 cut(s)	107, 176
MfeI	CAATTG	1 cut(s)	117
MflI	RGATCY	1 cut(s)	109
MhlI	GDGCHC	1 cut(s)	242
MluCI	AATT	2 cut(s)	117, 287
MlyI	GAGTC	1 cut(s)	110
MnlI	CCTC	2 cut(s)	135, 218
MseI	TTAA	1 cut(s)	50
MspI	CCGG	1 cut(s)	244
MspR9I	CCNGG	2 cut(s)	87, 244
MunI	CAATTG	1 cut(s)	117
MvaI	CCWGG	1 cut(s)	87
MwoI	GCNNNNNNNGC	1 cut(s)	32
NciI	CCSGG	1 cut(s)	244
NdeII	GATC	2 cut(s)	53, 109
NheI	GCTAGC	1 cut(s)	332
NlaIV	GGNNCC	1 cut(s)	111
NmuCI	GTSAC	2 cut(s)	102, 202
PaqCI	CACCTGC	1 cut(s)	141
PfeI	GAWTC	2 cut(s)	62, 229
PkrI	GCNGC	1 cut(s)	338
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
PsiI	TTATAA	1 cut(s)	309
Psp6I	CCWGG	1 cut(s)	85
PspFI	CCCAGC	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	85
PspN4I	GGNNCC	1 cut(s)	111
PsuI	RGATCY	1 cut(s)	109
SaqAI	TTAA	1 cut(s)	50
SatI	GCNGC	1 cut(s)	337
Sau3AI	GATC	2 cut(s)	53, 109
SchI	GAGTC	1 cut(s)	110
ScrFI	CCNGG	2 cut(s)	87, 244
SduI	GDGCHC	1 cut(s)	242
SetI	ASST	5 cut(s)	61, 135, 146, 204, 219
Sse9I	AATT	2 cut(s)	117, 287
SsiI	CCGC	1 cut(s)	35
SspMI	CTAG	1 cut(s)	333
StyD4I	CCNGG	2 cut(s)	85, 242
TaaI	ACNGT	2 cut(s)	31, 298
TaiI	ACGT	1 cut(s)	204
TasI	AATT	2 cut(s)	117, 287
TfiI	GAWTC	2 cut(s)	62, 229
Tru1I	TTAA	1 cut(s)	50
Tru9I	TTAA	1 cut(s)	50
TscAI	CASTG	1 cut(s)	178
TseFI	GTSAC	2 cut(s)	102, 202
TseI	GCWGC	1 cut(s)	336
Tsp45I	GTSAC	2 cut(s)	102, 202
TspDTI	ATGAA	2 cut(s)	36, 108
TspRI	CASTG	1 cut(s)	178
XapI	RAATTY	1 cut(s)	287
XspI	CTAG	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.