Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0008047

Physical Location & Seq

Genomic Coordinates Forward (+)

10570135 .. 10570538

Gene Structure 404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g11760.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGAACAACTCATTTGGTGATGATTATGATGAAGCAACTGTTGCAGGATTTGAAGTTTTAAGATCACCCGATGCAAGTTACAACAACGTGTACCCTGGGAATGAAGACGAGGCACGGGATCCACCTCTTGTCCCTCCACATCTGCAACAGACATTACTTAGTTACCCAGCAAGCGCAGACACTGCCGGAACCCTTCCAGCACCGCAAAACGTGACACTCAACCATCTTTACATTGAGAACCGGGAGACCCCACGCTCTGTGGTCGCACTTGGGTTCACTCATCGCTTTCGTTCAAAATTTGTTTCAGTTGTGCTTTACAAACCAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0003674 GO:0008150 GO:0019207 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031399 GO:0032268 GO:0042325 GO:0043549 GO:0045859 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051338 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko04068 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 map04068 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410

Pfam Domains

Protein Families

AMPKBI

Protein Analysis

110

Amino Acids

12.08

Weight (kDa)

4.95

Isoelectric Point (pI)

51.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28060 AT2G28060 AT2G28060 AT2G28060
fragaria_vesca	FvH4_3g31260
malus_domestica	MD03G1124800.v1.1 MD11G1141500.v1.1
prunus_persica	Prupe.6G107300_v2.0.a1 Prupe.6G107300_v2.0.a1 Prupe.6G107300_v2.0.a1
pyrus_communis	pycom11g11760
rosa_chinensis	RchiOBHm_Chr5g0057871
rosa_laevigata	RLG00000035189
rosa_multiflora	Rmu_sc0005588.1_g000007 Rmu_sc0016426.1_g000003
rosa_roxburghii	Rroxscaffold_1G00022570
rosa_rugosa	Rorug05G0310300 Rorug05G0310300 Rorug05G0310400
rosa_samantha	Rh5AG379000 Rh5BG390100 Rh5CG413900 Rh5DG404600
rosa_wichuraiana	Rw5G035700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	203
AclWI	GGATC	2 cut(s)	113, 126
AcsI	RAATTY	1 cut(s)	296
AfaI	GTAC	1 cut(s)	92
AflIII	ACRYGT	1 cut(s)	87
AgsI	TTSAA	2 cut(s)	53, 294
AjnI	CCWGG	1 cut(s)	94
Alw26I	GTCTC	1 cut(s)	239
AlwI	GGATC	2 cut(s)	113, 126
AlwNI	CAGNNNCTG	1 cut(s)	182
ApoI	RAATTY	1 cut(s)	296
AspLEI	GCGC	1 cut(s)	176
AsuC2I	CCSGG	1 cut(s)	242
AsuHPI	GGTGA	2 cut(s)	29, 57
BamHI	GGATCC	1 cut(s)	118
BbsI	GAAGAC	1 cut(s)	111
BccI	CCATC	1 cut(s)	231
BciT130I	CCWGG	1 cut(s)	96
BcnI	CCSGG	1 cut(s)	242
BcoDI	GTCTC	1 cut(s)	239
Bme1390I	CCNGG	2 cut(s)	96, 242
BmiI	GGNNCC	2 cut(s)	120, 190
BmrFI	CCNGG	2 cut(s)	96, 242
BmsI	GCATC	1 cut(s)	61
BpiI	GAAGAC	1 cut(s)	111
BpuMI	CCSGG	1 cut(s)	242
BsaI	GGTCTC	1 cut(s)	239
BsaJI	CCNNGG	2 cut(s)	94, 95
Bse1I	ACTGG	1 cut(s)	323
BseBI	CCWGG	1 cut(s)	96
BseDI	CCNNGG	2 cut(s)	94, 95
BseNI	ACTGG	1 cut(s)	323
BseYI	CCCAGC	1 cut(s)	166
BsiSI	CCGG	2 cut(s)	186, 241
BslFI	GGGAC	1 cut(s)	116
BsmAI	GTCTC	1 cut(s)	239
BsmFI	GGGAC	1 cut(s)	116
Bso31I	GGTCTC	1 cut(s)	239
Bsp143I	GATC	2 cut(s)	62, 118
BspACI	CCGC	1 cut(s)	203
BspLI	GGNNCC	2 cut(s)	120, 190
BspPI	GGATC	2 cut(s)	113, 126
BspTNI	GGTCTC	1 cut(s)	239
BsrI	ACTGG	1 cut(s)	323
BssECI	CCNNGG	2 cut(s)	94, 95
BssMI	GATC	2 cut(s)	62, 118
Bst2UI	CCWGG	1 cut(s)	96
Bst4CI	ACNGT	1 cut(s)	40
BstAPI	GCANNNNNTGC	2 cut(s)	41, 182
BstC8I	GCNNGC	1 cut(s)	172
BstDEI	CTNAG	1 cut(s)	158
BstHHI	GCGC	1 cut(s)	176
BstKTI	GATC	2 cut(s)	65, 121
BstMAI	GTCTC	1 cut(s)	239
BstMBI	GATC	2 cut(s)	62, 118
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 182
BstNI	CCWGG	1 cut(s)	96
BstSCI	CCNGG	2 cut(s)	94, 240
BstV2I	GAAGAC	1 cut(s)	111
BstX2I	RGATCY	1 cut(s)	118
BstYI	RGATCY	1 cut(s)	118
BtgZI	GCGATG	1 cut(s)	266
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	180
Cac8I	GCNNGC	1 cut(s)	172
CaiI	CAGNNNCTG	1 cut(s)	182
CfoI	GCGC	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	91
CviQI	GTAC	1 cut(s)	91
DdeI	CTNAG	1 cut(s)	158
DpnI	GATC	2 cut(s)	64, 120
DpnII	GATC	2 cut(s)	62, 118
Eco31I	GGTCTC	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	94
FaiI	YATR	1 cut(s)	27
FaqI	GGGAC	1 cut(s)	116
GlaI	GCGC	1 cut(s)	175
GsaI	CCCAGC	1 cut(s)	170
HapII	CCGG	2 cut(s)	186, 241
HhaI	GCGC	1 cut(s)	176
Hin6I	GCGC	1 cut(s)	174
HinP1I	GCGC	1 cut(s)	174
HpaII	CCGG	2 cut(s)	186, 241
HphI	GGTGA	2 cut(s)	29, 57
Hpy166II	GTNNAC	2 cut(s)	91, 276
Hpy8I	GTNNAC	2 cut(s)	91, 276
HpyAV	CCTTC	1 cut(s)	203
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4IV	ACGT	2 cut(s)	87, 210
HpyCH4V	TGCA	3 cut(s)	44, 74, 145
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 182
HpyF3I	CTNAG	1 cut(s)	158
HpySE526I	ACGT	2 cut(s)	87, 210
HspAI	GCGC	1 cut(s)	174
Kzo9I	GATC	2 cut(s)	62, 118
LpnPI	CCDG	7 cut(s)	30, 81, 108, 180, 199, 210, 254
LweI	GCATC	1 cut(s)	61
MaeII	ACGT	2 cut(s)	87, 210
MaeIII	GTNAC	3 cut(s)	77, 161, 211
MalI	GATC	2 cut(s)	64, 120
MboI	GATC	2 cut(s)	62, 118
MboII	GAAGA	1 cut(s)	116
MflI	RGATCY	1 cut(s)	118
MluCI	AATT	1 cut(s)	296
MnlI	CCTC	3 cut(s)	103, 135, 144
MseI	TTAA	2 cut(s)	59, 328
MspI	CCGG	2 cut(s)	186, 241
MspR9I	CCNGG	2 cut(s)	96, 242
MvaI	CCWGG	1 cut(s)	96
MwoI	GCNNNNNNNGC	2 cut(s)	41, 182
NciI	CCSGG	1 cut(s)	242
NdeII	GATC	2 cut(s)	62, 118
NlaIV	GGNNCC	2 cut(s)	120, 190
NmuCI	GTSAC	1 cut(s)	211
PasI	CCCWGGG	1 cut(s)	95
Psp6I	CCWGG	1 cut(s)	94
PspFI	CCCAGC	1 cut(s)	166
PspGI	CCWGG	1 cut(s)	94
PspN4I	GGNNCC	2 cut(s)	120, 190
PstNI	CAGNNNCTG	1 cut(s)	182
PsuI	RGATCY	1 cut(s)	118
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
SaqAI	TTAA	2 cut(s)	59, 328
Sau3AI	GATC	2 cut(s)	62, 118
ScrFI	CCNGG	2 cut(s)	96, 242
SetI	ASST	3 cut(s)	90, 127, 213
SfaNI	GCATC	1 cut(s)	61
Sse9I	AATT	1 cut(s)	296
SsiI	CCGC	1 cut(s)	203
StyD4I	CCNGG	2 cut(s)	94, 240
TaaI	ACNGT	1 cut(s)	40
TaiI	ACGT	2 cut(s)	90, 213
TasI	AATT	1 cut(s)	296
Tru1I	TTAA	2 cut(s)	59, 328
Tru9I	TTAA	2 cut(s)	59, 328
TscAI	CASTG	1 cut(s)	187
TseFI	GTSAC	1 cut(s)	211
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	3 cut(s)	17, 45, 117
TspRI	CASTG	1 cut(s)	187
XapI	RAATTY	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.