Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0008047

Physical Location & Seq

Genomic Coordinates Forward (+)

11758676 .. 11764104

Gene Structure 5429 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1124800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGAACAACTCATTTGGTGATGATTATGATGAAGCAACTGTTGCAGGATTTGAAGTTTTAAGATCACCCGATGCAAGTTACAACAATGTGTACCCAGGGAATGAAGACGAGGCCCAGGATCCACCTCTTGTCCCTCCACAGCTGCAACAGACGTTACTTAGTTACCCAGCAAGTGCAGACACTACGGGAACTATTCCCTTACCACAAAACGTGACACTCAACCATCTTTACATTGAGAACCGGGAGACCCCACGATCTGTGGTCGCACTTGGGTTCACTCATCGCATTCGTTCAAAATTTGTTACAGTTGTGCTATACAAACCAGTTCAAAGAAGGGGCACTACCAGCAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0003674 GO:0008150 GO:0019207 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031399 GO:0032268 GO:0042325 GO:0043549 GO:0045859 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051338 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko04068 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 map04068 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410

Pfam Domains

Protein Families

AMPKBI

Protein Analysis

118

Amino Acids

12.97

Weight (kDa)

4.97

Isoelectric Point (pI)

51.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMPKBI	PF04739	38 - 108	2.4e-23	5'-AMP-activated protein kinase beta subunit, interaction domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28060 AT2G28060 AT2G28060 AT2G28060
fragaria_vesca	FvH4_3g31260
malus_domestica	MD03G1124800.v1.1 MD11G1141500.v1.1
prunus_persica	Prupe.6G107300_v2.0.a1 Prupe.6G107300_v2.0.a1 Prupe.6G107300_v2.0.a1
pyrus_communis	pycom11g11760
rosa_chinensis	RchiOBHm_Chr5g0057871
rosa_laevigata	RLG00000035189
rosa_multiflora	Rmu_sc0005588.1_g000007 Rmu_sc0016426.1_g000003
rosa_roxburghii	Rroxscaffold_1G00022570
rosa_rugosa	Rorug05G0310300 Rorug05G0310300 Rorug05G0310400
rosa_samantha	Rh5AG379000 Rh5BG390100 Rh5CG413900 Rh5DG404600
rosa_wichuraiana	Rw5G035700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	113, 126
AcsI	RAATTY	1 cut(s)	296
AfaI	GTAC	1 cut(s)	92
AgsI	TTSAA	3 cut(s)	53, 294, 329
AjnI	CCWGG	2 cut(s)	94, 114
AluBI	AGCT	1 cut(s)	142
AluI	AGCT	1 cut(s)	142
Alw26I	GTCTC	1 cut(s)	239
AlwI	GGATC	2 cut(s)	113, 126
AoxI	GGCC	1 cut(s)	111
ApeKI	GCWGC	1 cut(s)	142
ApoI	RAATTY	1 cut(s)	296
AspS9I	GGNCC	1 cut(s)	112
AsuC2I	CCSGG	1 cut(s)	242
AsuHPI	GGTGA	2 cut(s)	29, 57
BaeGI	GKGCMC	1 cut(s)	341
BamHI	GGATCC	1 cut(s)	118
BarI	GAAGNNNNNNTAC	1 cut(s)	325
BbsI	GAAGAC	1 cut(s)	111
BbvI	GCAGC	1 cut(s)	129
BccI	CCATC	1 cut(s)	231
BciT130I	CCWGG	2 cut(s)	96, 116
BcnI	CCSGG	1 cut(s)	242
BcoDI	GTCTC	1 cut(s)	239
BisI	GCNGC	1 cut(s)	143
BlsI	GCNGC	1 cut(s)	144
Bme1390I	CCNGG	3 cut(s)	96, 116, 242
BmgT120I	GGNCC	1 cut(s)	112
BmiI	GGNNCC	1 cut(s)	120
BmrFI	CCNGG	3 cut(s)	96, 116, 242
BmsI	GCATC	1 cut(s)	61
BpiI	GAAGAC	1 cut(s)	111
BpuMI	CCSGG	1 cut(s)	242
BsaI	GGTCTC	1 cut(s)	239
BsaJI	CCNNGG	3 cut(s)	94, 95, 114
Bse1I	ACTGG	1 cut(s)	323
BseBI	CCWGG	2 cut(s)	96, 116
BseDI	CCNNGG	3 cut(s)	94, 95, 114
BseNI	ACTGG	1 cut(s)	323
BseSI	GKGCMC	1 cut(s)	341
BseXI	GCAGC	1 cut(s)	129
BseYI	CCCAGC	1 cut(s)	166
BsgI	GTGCAG	1 cut(s)	195
BshFI	GGCC	1 cut(s)	113
BsiSI	CCGG	1 cut(s)	241
BslFI	GGGAC	1 cut(s)	116
BsmAI	GTCTC	1 cut(s)	239
BsmFI	GGGAC	1 cut(s)	116
BsmI	GAATGC	1 cut(s)	285
BsnI	GGCC	1 cut(s)	113
Bso31I	GGTCTC	1 cut(s)	239
Bsp1286I	GDGCHC	1 cut(s)	341
Bsp143I	GATC	3 cut(s)	62, 118, 254
BspANI	GGCC	1 cut(s)	113
BspLI	GGNNCC	1 cut(s)	120
BspPI	GGATC	2 cut(s)	113, 126
BspTNI	GGTCTC	1 cut(s)	239
BsrI	ACTGG	1 cut(s)	323
BssECI	CCNNGG	3 cut(s)	94, 95, 114
BssMI	GATC	3 cut(s)	62, 118, 254
Bst2UI	CCWGG	2 cut(s)	96, 116
Bst4CI	ACNGT	2 cut(s)	40, 307
BstAPI	GCANNNNNTGC	1 cut(s)	41
BstDEI	CTNAG	1 cut(s)	158
BstKTI	GATC	3 cut(s)	65, 121, 257
BstMAI	GTCTC	1 cut(s)	239
BstMBI	GATC	3 cut(s)	62, 118, 254
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 345
BstNI	CCWGG	2 cut(s)	96, 116
BstSCI	CCNGG	3 cut(s)	94, 114, 240
BstSLI	GKGCMC	1 cut(s)	341
BstV1I	GCAGC	1 cut(s)	129
BstV2I	GAAGAC	1 cut(s)	111
BstX2I	RGATCY	1 cut(s)	118
BstYI	RGATCY	1 cut(s)	118
BsuRI	GGCC	1 cut(s)	113
BtgZI	GCGATG	1 cut(s)	266
Cfr13I	GGNCC	1 cut(s)	112
Csp6I	GTAC	1 cut(s)	91
CviJI	RGCY	2 cut(s)	113, 142
CviKI_1	RGCY	2 cut(s)	113, 142
CviQI	GTAC	1 cut(s)	91
DdeI	CTNAG	1 cut(s)	158
DpnI	GATC	3 cut(s)	64, 120, 256
DpnII	GATC	3 cut(s)	62, 118, 254
Eco31I	GGTCTC	1 cut(s)	239
EcoRII	CCWGG	2 cut(s)	94, 114
FaiI	YATR	2 cut(s)	27, 316
FaqI	GGGAC	1 cut(s)	116
Fnu4HI	GCNGC	1 cut(s)	143
Fsp4HI	GCNGC	1 cut(s)	143
GluI	GCNGC	1 cut(s)	143
GsaI	CCCAGC	1 cut(s)	170
HaeIII	GGCC	1 cut(s)	113
HapII	CCGG	1 cut(s)	241
HpaII	CCGG	1 cut(s)	241
HphI	GGTGA	2 cut(s)	29, 57
Hpy166II	GTNNAC	2 cut(s)	91, 276
Hpy8I	GTNNAC	2 cut(s)	91, 276
HpyAV	CCTTC	1 cut(s)	327
HpyCH4III	ACNGT	2 cut(s)	40, 307
HpyCH4IV	ACGT	2 cut(s)	152, 210
HpyCH4V	TGCA	4 cut(s)	44, 74, 145, 176
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 345
HpyF3I	CTNAG	1 cut(s)	158
HpySE526I	ACGT	2 cut(s)	152, 210
Kzo9I	GATC	3 cut(s)	62, 118, 254
LpnPI	CCDG	8 cut(s)	30, 81, 101, 108, 128, 180, 254, 336
Lsp1109I	GCAGC	1 cut(s)	129
LweI	GCATC	1 cut(s)	61
MaeII	ACGT	2 cut(s)	152, 210
MaeIII	GTNAC	5 cut(s)	77, 153, 161, 211, 301
MalI	GATC	3 cut(s)	64, 120, 256
MboI	GATC	3 cut(s)	62, 118, 254
MboII	GAAGA	1 cut(s)	116
MflI	RGATCY	1 cut(s)	118
MhlI	GDGCHC	1 cut(s)	341
MluCI	AATT	1 cut(s)	296
MnlI	CCTC	3 cut(s)	103, 135, 144
MseI	TTAA	1 cut(s)	59
MspA1I	CMGCKG	1 cut(s)	142
MspI	CCGG	1 cut(s)	241
MspR9I	CCNGG	3 cut(s)	96, 116, 242
Mva1269I	GAATGC	1 cut(s)	285
MvaI	CCWGG	2 cut(s)	96, 116
MwoI	GCNNNNNNNGC	2 cut(s)	41, 345
NciI	CCSGG	1 cut(s)	242
NdeII	GATC	3 cut(s)	62, 118, 254
NlaIV	GGNNCC	1 cut(s)	120
NmuCI	GTSAC	1 cut(s)	211
PasI	CCCWGGG	1 cut(s)	95
PctI	GAATGC	1 cut(s)	285
PkrI	GCNGC	1 cut(s)	144
Psp6I	CCWGG	2 cut(s)	94, 114
PspFI	CCCAGC	1 cut(s)	166
PspGI	CCWGG	2 cut(s)	94, 114
PspN4I	GGNNCC	1 cut(s)	120
PspPI	GGNCC	1 cut(s)	112
PsuI	RGATCY	1 cut(s)	118
PvuII	CAGCTG	1 cut(s)	142
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
SaqAI	TTAA	1 cut(s)	59
SatI	GCNGC	1 cut(s)	143
Sau3AI	GATC	3 cut(s)	62, 118, 254
Sau96I	GGNCC	1 cut(s)	112
ScrFI	CCNGG	3 cut(s)	96, 116, 242
SduI	GDGCHC	1 cut(s)	341
SetI	ASST	4 cut(s)	127, 144, 155, 213
SfaNI	GCATC	1 cut(s)	61
Sse9I	AATT	1 cut(s)	296
StyD4I	CCNGG	3 cut(s)	94, 114, 240
TaaI	ACNGT	2 cut(s)	40, 307
TaiI	ACGT	2 cut(s)	155, 213
TasI	AATT	1 cut(s)	296
Tru1I	TTAA	1 cut(s)	59
Tru9I	TTAA	1 cut(s)	59
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	1 cut(s)	142
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	3 cut(s)	17, 45, 117
XapI	RAATTY	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.